FFCP PHASE1:Hg19::chr17:74540323..74540336,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=768206 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=32528 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=438bp_to_uc002jrz.1_5end | |||
|coexpression_cluster_id=C3681 | |||
|description=CAGE_peak_6_at_PRCD_5end | |||
|id=chr17:74540323..74540336,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000333;2.72e-40;5!CL:0002321;5.76e-14;15 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005425;1.87e-23;1!UBERON:0006222;4.10e-23;1!UBERON:0006601;1.91e-09;82!UBERON:0003056;1.00e-08;3 | |||
|ontology_enrichment_disease=DOID:171!1.24e-10!10;DOID:169!8.46e-09!6 | |||
|ontology_enrichment_disease_v019=DOID:169;9.93e-34;6!DOID:171;1.42e-20;10!DOID:3095;1.88e-16;22!DOID:2994;1.88e-16;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,9.39e-34,6;DOID:171,1.37e-20,10;DOID:3095,1.70e-16,22;DOID:2994,1.70e-16,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!6.71e-56!94;UBERON:0001016!6.71e-56!94;UBERON:0001049!7.23e-56!57;UBERON:0005068!7.23e-56!57;UBERON:0006241!7.23e-56!57;UBERON:0007135!7.23e-56!57;UBERON:0002346!1.00e-50!90;UBERON:0003075!3.24e-48!86;UBERON:0007284!3.24e-48!86;UBERON:0005743!6.08e-48!86;UBERON:0002616!3.92e-47!59;UBERON:0000955!6.60e-47!69;UBERON:0006238!6.60e-47!69;UBERON:0001017!1.56e-45!82;UBERON:0002780!1.71e-42!41;UBERON:0001890!1.71e-42!41;UBERON:0006240!1.71e-42!41;UBERON:0003080!2.47e-41!42;UBERON:0003056!9.35e-39!61;UBERON:0007023!3.14e-38!115;UBERON:0002020!4.06e-36!34;UBERON:0003528!4.06e-36!34;UBERON:0001893!4.52e-36!34;UBERON:0002791!7.52e-34!33;UBERON:0000924!6.32e-33!173;UBERON:0006601!6.32e-33!173;UBERON:0001869!3.16e-31!32;UBERON:0004121!8.50e-31!169;UBERON:0000033!1.37e-30!123;UBERON:0000153!1.08e-28!129;UBERON:0007811!1.08e-28!129;UBERON:0002619!2.66e-22!22;UBERON:0001950!4.32e-21!20;UBERON:0002308!9.35e-21!9;UBERON:0000125!9.35e-21!9;UBERON:0000956!2.52e-19!25;UBERON:0000203!2.52e-19!25;UBERON:0002298!1.58e-18!8;UBERON:0002420!1.29e-15!9;UBERON:0007245!1.29e-15!9;UBERON:0010009!1.29e-15!9;UBERON:0010011!1.29e-15!9;UBERON:0000454!1.29e-15!9;UBERON:0009663!2.16e-15!7;UBERON:0003076!4.21e-15!15;UBERON:0003057!4.21e-15!15;UBERON:0000025!1.37e-14!194;UBERON:0004732!3.24e-14!13;UBERON:0000200!1.55e-12!6;UBERON:0000119!1.67e-12!312;UBERON:0000483!5.45e-12!309;UBERON:0000475!8.15e-12!365;UBERON:0004733!9.00e-12!12;UBERON:0002028!9.00e-12!12;UBERON:0007277!9.00e-12!12;UBERON:0004111!1.37e-10!241;UBERON:0000013!1.43e-10!5;UBERON:0002410!1.43e-10!5;UBERON:0001896!2.71e-10!3;UBERON:0005290!2.71e-10!3;UBERON:0010096!2.71e-10!3;UBERON:0006331!4.04e-10!3;UBERON:0002021!6.45e-10!5;UBERON:0002771!7.40e-10!3;UBERON:0000988!8.10e-10!3;UBERON:0001871!3.40e-09!7;UBERON:0000064!3.44e-09!219;UBERON:0000010!7.45e-09!8;UBERON:0000477!9.88e-09!286;UBERON:0001894!9.88e-08!7;UBERON:0006222!9.88e-08!7;UBERON:0001897!1.02e-07!2;UBERON:0005162!1.27e-07!2;UBERON:0000122!1.27e-07!2;UBERON:0001875!2.03e-07!2;UBERON:0006514!2.03e-07!2;UBERON:0000369!3.69e-07!4;UBERON:0002435!3.69e-07!4;UBERON:0000204!3.69e-07!4;UBERON:0010082!3.69e-07!4;UBERON:0002148!3.77e-07!2;UBERON:0009662!3.77e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;2.72e-40;5!UBERON:0002410;2.72e-40;5!UBERON:0000010;1.47e-39;8!UBERON:0000941;1.87e-23;1!UBERON:0001785;1.87e-23;1!UBERON:0002464;1.87e-23;1!UBERON:0004904;1.87e-23;1!UBERON:0001021;1.87e-23;1!UBERON:0001894;1.31e-13;7!UBERON:0001897;1.65e-12;2!UBERON:0010225;1.65e-12;2!UBERON:0003714;1.96e-12;2!UBERON:0005162;1.96e-12;2!UBERON:0000122;1.96e-12;2!UBERON:0001896;1.30e-08;3!UBERON:0005290;1.30e-08;3!UBERON:0004732;9.68e-08;13!UBERON:0002784;6.87e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.55e-40,5;UBERON:0002410,2.55e-40,5;UBERON:0000010,1.33e-39,8;UBERON:0000941,1.67e-23,1;UBERON:0001785,1.67e-23,1;UBERON:0002464,1.67e-23,1;UBERON:0004904,1.67e-23,1;UBERON:0001021,1.67e-23,1;UBERON:0003902,1.67e-23,1;UBERON:0005425,1.67e-23,1;UBERON:0001016,3.95e-15,89;UBERON:0001894,1.40e-13,7;UBERON:0006222,1.40e-13,7;UBERON:0001897,1.65e-12,2;UBERON:0010225,1.65e-12,2;UBERON:0003714,1.85e-12,2;UBERON:0005162,1.85e-12,2;UBERON:0000122,1.85e-12,2;UBERON:0001896,1.51e-08,3;UBERON:0005290,1.51e-08,3;UBERON:0010096,1.51e-08,3;UBERON:0004121,7.05e-08,171;UBERON:0000924,7.05e-08,171;UBERON:0006601,7.05e-08,171;UBERON:0004732,1.02e-07,13;UBERON:0002784,6.87e-07,4;UBERON:0000073,7.16e-07,53;UBERON:0002616,7.16e-07,53;UBERON:0001781,7.27e-07,4;UBERON:0003075,8.95e-07,82;UBERON:0007284,8.95e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0.328014645699706,0,0.103041011647722,0,0,0,0,0,0.193341436584244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0.143411352204052,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.556608588971108,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0.295547618953547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.67401132980677,0,1.1713222286267,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569797163602908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.684526894459965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.681017030557878,0,0,0,0,0,0.182248669974074,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732157589411779,0.3755727921195,1.14681839138014,0.443716206147409,0.683060432355218,0,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,2.55788742607303,6.03818943821418,0.157265941855896,1.74735421107222,0.169732529954025,0,0.371807292777007,0,0,0,0,0,0,0.192687675289379,1.41696576325585,0.798169295285756,0.205116364240755,0,0.138314504928436,0.968853873791107,2.85538840518309,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0,0,0.253663240775627,0,0,0,0,0,0,0,0.606965604236632,0,0,0,0,0.339848664884159,0.460409414939944,0,0,0,0.314231179832004,0,0,0,0,0.0714765441766563,0.47404083519818,0.23248285073625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0,0,0,0,0,0,0.588925401344836,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0.860037498908708,0,0.475940431336403,0,0,0,0,0,0,0,1.77377901416012,0,0,0,0,0,0.267964130156178,3.31667775783512,0.827463966895162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p6@PRCD | |||
}} |
Revision as of 17:28, 20 January 2014
Short description: | p6@PRCD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PRCD_5end |
Coexpression cluster: | C3681_neuroblastoma_optic_teratocarcinoma_substantia_diencephalon_corpus_globus |
Association with transcript: | 438bp_to_uc002jrz.1_5end |
EntrezGene: | PRCD |
HGNC: | 32528 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.55e-40 | 5 |
autonomic nervous system | 2.55e-40 | 5 |
peripheral nervous system | 1.33e-39 | 8 |
cranial nerve II | 1.67e-23 | 1 |
cranial nerve | 1.67e-23 | 1 |
nerve trunk | 1.67e-23 | 1 |
nerve connecting eye with brain | 1.67e-23 | 1 |
nerve | 1.67e-23 | 1 |
retinal neural layer | 1.67e-23 | 1 |
presumptive neural retina | 1.67e-23 | 1 |
nervous system | 3.95e-15 | 89 |
diencephalon | 1.40e-13 | 7 |
future diencephalon | 1.40e-13 | 7 |
dorsal plus ventral thalamus | 1.65e-12 | 2 |
thalamic complex | 1.65e-12 | 2 |
neural tissue | 1.85e-12 | 2 |
multi cell component structure | 1.85e-12 | 2 |
neuron projection bundle | 1.85e-12 | 2 |
medulla oblongata | 1.51e-08 | 3 |
myelencephalon | 1.51e-08 | 3 |
future myelencephalon | 1.51e-08 | 3 |
ectoderm-derived structure | 7.05e-08 | 171 |
ectoderm | 7.05e-08 | 171 |
presumptive ectoderm | 7.05e-08 | 171 |
segmental subdivision of nervous system | 1.02e-07 | 13 |
regional part of diencephalon | 6.87e-07 | 4 |
regional part of nervous system | 7.16e-07 | 53 |
regional part of brain | 7.16e-07 | 53 |
layer of retina | 7.27e-07 | 4 |
neural plate | 8.95e-07 | 82 |
presumptive neural plate | 8.95e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 9.39e-34 | 6 |
neuroectodermal tumor | 1.37e-20 | 10 |
germ cell and embryonal cancer | 1.70e-16 | 22 |
germ cell cancer | 1.70e-16 | 22 |