FFCP PHASE1:Hg19::chr17:61778501..61778526,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80774 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28142 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=-456bp_to_uc002jbl.3_5end | |||
|description=CAGE_peak_4_at_LIMD2_5end | |||
|id=chr17:61778501..61778526,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000235;4.87e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000235,4.83e-08,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002619!1.25e-12!22;UBERON:0001869!1.04e-11!32;UBERON:0001950!1.22e-11!20;UBERON:0001893!2.49e-11!34;UBERON:0002020!3.92e-11!34;UBERON:0003528!3.92e-11!34;UBERON:0000956!4.71e-11!25;UBERON:0000203!4.71e-11!25;UBERON:0002791!9.95e-11!33;UBERON:0002616!1.76e-09!59;UBERON:0003080!2.64e-09!42;UBERON:0002780!5.01e-09!41;UBERON:0001890!5.01e-09!41;UBERON:0006240!5.01e-09!41;UBERON:0007023!2.82e-08!115;UBERON:0000955!4.91e-08!69;UBERON:0006238!4.91e-08!69;UBERON:0001049!5.03e-08!57;UBERON:0005068!5.03e-08!57;UBERON:0006241!5.03e-08!57;UBERON:0007135!5.03e-08!57;UBERON:0001017!5.61e-08!82;UBERON:0005743!2.34e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;7.68e-19;22!UBERON:0001950;1.10e-18;20!UBERON:0000956;4.36e-16;25!UBERON:0000203;4.36e-16;25!UBERON:0001869;2.24e-15;32!UBERON:0002791;7.75e-14;32!UBERON:0001893;1.79e-13;34!UBERON:0003528;2.09e-12;34!UBERON:0002020;2.09e-12;34!UBERON:0001871;6.87e-12;6!UBERON:0002780;1.95e-10;41!UBERON:0001890;1.95e-10;41!UBERON:0000200;1.46e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,3.05e-19,22;UBERON:0001950,5.53e-19,20;UBERON:0001869,2.69e-17,32;UBERON:0000956,1.96e-16,25;UBERON:0000203,1.96e-16,25;UBERON:0001893,5.77e-16,34;UBERON:0002791,2.55e-15,32;UBERON:0003528,3.98e-14,34;UBERON:0002020,3.98e-14,34;UBERON:0002780,8.11e-14,41;UBERON:0001890,8.11e-14,41;UBERON:0003080,8.11e-14,41;UBERON:0006240,8.11e-14,41;UBERON:0001871,5.00e-12,6;UBERON:0000073,1.94e-09,53;UBERON:0002616,1.94e-09,53;UBERON:0000955,2.11e-09,68;UBERON:0006238,2.11e-09,68;UBERON:0001049,1.20e-08,56;UBERON:0005068,1.20e-08,56;UBERON:0006241,1.20e-08,56;UBERON:0007135,1.20e-08,56;UBERON:0001017,1.53e-08,81;UBERON:0003056,2.19e-08,61;UBERON:0001016,1.03e-07,89;UBERON:0000200,1.18e-07,6 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.281908808191942,0,0.893922188854576,0,0,0.631719873426831,0.261185628199839,1.72013755551056,3.48900583986214,0.655324116390517,1.31883489114227,0.123766352960047,0,0,0,0,0,0.492484232307152,0.612002073732759,0.626909442956176,0.286235987131057,0,0.125542639594803,1.06978768047132,1.31360943119913,1.10195093839151,0,0.383829398097213,0.309632246632152,0,0,0,0,0.426507697462265,0,0,0.401088894940283,1.08505435357926,0.223915474239924,0,0,0.726991193897824,0.755751887377619,0.485168122375632,0,0,0.619412741790207,0.28769239232215,0,0.236482229888585,0,0,0,0.376484679085209,1.09162460023138,0,0.918251677112708,0.320929027076094,0,0.329851300186716,0.797854630486527,0,0.290209238628584,0,0,0.75374599577023,0,0,0.605399502633369,0,0,0.422510572623884,0.850417199860174,0.419317291016752,1.46027220490444,1.95229960693958,0.803627933485401,0.570025487482497,0.39783335439818,0.365328307529268,1.75996244461323,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0.263384084775077,0.196709770113833,0,0,1.17030546773475,0.32592226663359,1.4203434172042,0,0.668462741311041,0,0.443067789167242,0,0.640456598628376,0.780356085359269,2.13769275984779,1.10540007114339,1.44901542867526,0.296573126324121,0.535081656179426,0,0.793165398882963,0.383220493601921,0.34362744548263,0.759059076058509,0.637130828648193,0.651083453856419,0.950452044448374,0.752875595388864,0.255973222308837,0,0.473554504088034,0.821127996921047,0.403213486449465,0.534880391567015,0,2.43806866313962,2.68280343881454,0.767175371061182,0.361439152384566,0,0.289693037921647,0,1.45990461090791,0.945348171640679,1.33037638477538,0.702678285545008,0.654895377488563,0,0,15.9028222890795,14.975157407737,21.0073577619807,0.238490624305342,0,0,0.79504962946682,0,0,0,0,0.550236083880135,0.626984899610432,0.516833518338658,0.71153252537342,0.66944122552934,1.20848795132744,0,1.22031028774085,0.367663080345869,0,0.803697554556718,1.12264686313085,1.46394924628319,0,0.949265659568129,1.09921046358244,1.31780417436063,0,0,0.993943903390637,0,0,0,0,0,2.1349799145941,0.24666754841716,0.622422070799533,0.808264032418128,1.14423332179421,0.454072282934794,0.576175924479999,0,0.624320153660641,0.570471821544449,0.597794722207204,0,0.323745888736263,0.140450806702248,0,0.245668634623536,0.103325781175765,1.18800285728205,0,0,1.43723628363248,0,0.125118519871964,0,0,0.30648779579902,0.300476117813194,0.453728732640084,0.179389635688862,0.427114777637135,0.635795703478686,0.600182192168805,0.309157587715317,0.257640540045629,0.558350568994769,0.337552664482532,0.292311015483596,0.504867548488229,0.552299391853796,0.161646056818812,0.710019185033229,0.201504196455281,0.169560592310488,0,0,0,0.121973706129595,0.132529768321485,0,0.414644220061482,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0.738155454624648,4.20725321410337,3.2925920906512,1.47008711385542,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.115930404975077,0.234817388471643,0.577465791044295,0.925971025153221,1.14152491340759,0,0,1.47730203652438,15.9122900294682,8.02608276359133,0,0,0,0,0,0.383382679165211,0,0,0,0,0,2.41291998310242,2.29193055334967,0,0,4.31875469353959,2.70308752059526,1.71495859578347,0.672786506072164,1.74384027533312,0.7333828582095,0.387815147273333,7.15312891703765,2.535908257668,0,0,0.514414748524284,1.41849132023278,0.532844358032199,0.142977993658148,3.7983512377401,0,1.62868092146868,0.710783897485092,0,0,0,0,1.2162378064119,0,4.21667878966063,0,0,0,0.434343920002738,0.61642896765115,0.895304816199478,0.224170287987055,0.197030760201927,0.431255149719035,0.256686072559497,0.508189248444927,0,2.31986643833309,0,0.637938751653163,0.749007023947182,0,0.414415513436035,0.24538298343828,1.00034104211935,0.271265023699736,0,0,0,0,0,0,1.03473071292505,0,0.737476674166813,0.347534457872331,1.17480694477644,1.71571711905428,0.206768026122887,0.431428401637234,0.320182673410333,0.606255142892519,0,0.907170879989041,0.248107807818777,0.306923946576125,1.12264037773229,0.512556597022804,0,0.64341568457443,2.96836132889982,0.771048469013278,1.24293207719189,0.492762936082855,0.519254429183621,0.697262270759755,0,0,0,0.114814448164607,0.546273504020151,0,0,0.847168708148562,0.784349769176855,2.92278449306521,0.211103257785751,1.13733384070897,1.19065593693561,0.863663664408557,1.54227252690289,0.270946437543853,0.501689773854853,0.764628819135115,0,4.70136984916574,0,0,0,0.328014645699706,0,0.309123034943167,0,0,0,0,0,0.290012154876366,0.924291702687866,1.22802939780904,0.689182862422653,0.537101224341368,0.580066775656914,0.852266274161009,0.890320356467374,0.165284915360978,0.192190067365106,0.127612712494584,0.30347334256665,0,0,0,0.308033580176089,0,0.869932992075073,0.37064843820784,0.143124886741991,1.116475108079,0.632758849437452,0.38126038784765,0.767693373934002,0.42793898803392,0.318203247925937,0,0.539617372749944,0.274537029736055,0.471249609382746,0.606547444719948,0,0.421258456238981,1.46290121726877,0,0,0.272999822815972,0,0,0,0,0,0.578775534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| |||
|short_description=p4@LIMD2 | |||
}} |
Revision as of 16:45, 20 January 2014
Short description: | p4@LIMD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LIMD2_5end |
Coexpression cluster: | NA |
Association with transcript: | -456bp_to_uc002jbl.3_5end |
EntrezGene: | LIMD2 |
HGNC: | 28142 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage | 4.83e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 3.05e-19 | 22 |
neocortex | 5.53e-19 | 20 |
cerebral hemisphere | 2.69e-17 | 32 |
cerebral cortex | 1.96e-16 | 25 |
pallium | 1.96e-16 | 25 |
telencephalon | 5.77e-16 | 34 |
regional part of telencephalon | 2.55e-15 | 32 |
brain grey matter | 3.98e-14 | 34 |
gray matter | 3.98e-14 | 34 |
regional part of forebrain | 8.11e-14 | 41 |
forebrain | 8.11e-14 | 41 |
anterior neural tube | 8.11e-14 | 41 |
future forebrain | 8.11e-14 | 41 |
temporal lobe | 5.00e-12 | 6 |
regional part of nervous system | 1.94e-09 | 53 |
regional part of brain | 1.94e-09 | 53 |
brain | 2.11e-09 | 68 |
future brain | 2.11e-09 | 68 |
neural tube | 1.20e-08 | 56 |
neural rod | 1.20e-08 | 56 |
future spinal cord | 1.20e-08 | 56 |
neural keel | 1.20e-08 | 56 |
central nervous system | 1.53e-08 | 81 |
pre-chordal neural plate | 2.19e-08 | 61 |
nervous system | 1.03e-07 | 89 |
gyrus | 1.18e-07 | 6 |