FFCP PHASE1:Hg19::chr17:48271512..48271560,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-93bp_to_ENST00000476387_5end | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_36_at_COL1A1_5end | |||
|id=chr17:48271512..48271560,- | |||
|ontology_enrichment_celltype=CL:0000055!3.86e-38!180;CL:0000057!4.94e-27!75;CL:0000183!1.38e-15!59;CL:0000680!4.41e-15!57;CL:0000056!4.41e-15!57;CL:0000355!4.41e-15!57;CL:0000187!2.39e-14!54;CL:0000048!2.47e-12!430;CL:0000393!7.07e-12!60;CL:0000211!7.07e-12!60;CL:0000723!2.22e-11!436;CL:0000192!6.66e-11!42;CL:0000514!6.66e-11!42;CL:0000034!1.09e-10!444;CL:0002620!5.87e-09!23;CL:0000144!3.62e-08!625;CL:0002334!4.64e-08!12;CL:0002494!5.17e-08!16;CL:0002371!7.62e-08!591;CL:0000499!2.44e-07!27;CL:0000222!3.02e-07!119;CL:0000359!8.47e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000057;7.77e-10;73!CL:0000187;2.51e-09;55!CL:0000134;3.16e-09;55!CL:0002334;8.83e-09;12!CL:0002320;8.92e-09;188!CL:0000048;1.81e-08;58!CL:0000723;2.11e-08;61!CL:0000192;2.51e-08;43!CL:0000393;3.66e-08;61!CL:0000211;3.66e-08;61!CL:0000499;4.27e-08;28!CL:0002494;5.15e-08;16!CL:0002620;1.12e-07;23!CL:0002570;2.48e-07;8!CL:0000327;4.49e-07;15!CL:0000359;5.63e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.87e-27,76;CL:0000048,1.46e-19,427;CL:0000723,1.29e-18,433;CL:0000034,2.10e-17,441;CL:0000680,8.79e-16,58;CL:0000056,8.79e-16,58;CL:0000355,8.79e-16,58;CL:0000187,1.42e-15,55;CL:0000393,8.74e-13,61;CL:0000211,8.74e-13,61;CL:0000192,8.68e-12,43;CL:0000514,8.68e-12,43;CL:0002320,1.71e-10,361;CL:0000134,4.43e-09,354;CL:0002334,9.62e-09,12;CL:0000499,4.01e-08,28;CL:0002494,4.82e-08,16;CL:0002620,1.20e-07,23;CL:0002570,2.27e-07,8;CL:0000359,3.29e-07,32;CL:0000327,4.08e-07,15;CL:0000219,4.18e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000355;1.12e-08;58!CL:0000514;2.51e-08;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.88e-17!83;UBERON:0002329!2.88e-17!83;UBERON:0003077!2.88e-17!83;UBERON:0003059!2.88e-17!83;UBERON:0007282!2.88e-17!83;UBERON:0009618!2.88e-17!83;UBERON:0007285!2.88e-17!83;UBERON:0004290!1.79e-15!70;UBERON:0001134!2.93e-15!61;UBERON:0002036!2.93e-15!61;UBERON:0003082!2.93e-15!61;UBERON:0002385!9.29e-15!63;UBERON:0001015!9.29e-15!63;UBERON:0000383!9.29e-15!63;UBERON:0000486!3.34e-12!82;UBERON:0005256!5.12e-12!143;UBERON:0002100!1.42e-09!216;UBERON:0000475!3.40e-07!365;UBERON:0004872!4.58e-07!84;UBERON:0003102!5.61e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;3.77e-09;198!UBERON:0003688;2.07e-07;6!UBERON:0002358;2.07e-07;6!UBERON:0003684;2.07e-07;6!UBERON:0001178;2.07e-07;6!UBERON:0003104;2.54e-07;7!UBERON:0009142;2.54e-07;7!UBERON:0001013;3.64e-07;14!UBERON:0004457;4.53e-07;9!UBERON:0000042;4.53e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,2.24e-16,62;UBERON:0002036,2.24e-16,62;UBERON:0003082,2.24e-16,62;UBERON:0002385,2.04e-15,64;UBERON:0001015,2.04e-15,64;UBERON:0000383,2.04e-15,64;UBERON:0007524,4.18e-15,73;UBERON:0002329,8.64e-15,71;UBERON:0003059,8.64e-15,71;UBERON:0007282,8.64e-15,71;UBERON:0004290,8.64e-15,71;UBERON:0009618,8.64e-15,71;UBERON:0003077,2.22e-14,72;UBERON:0007285,2.22e-14,72;UBERON:0007503,1.12e-13,78;UBERON:0000486,5.39e-12,83;UBERON:0002384,1.20e-10,371;UBERON:0005256,1.22e-09,122;UBERON:0003104,7.51e-09,160;UBERON:0009142,7.51e-09,160;UBERON:0003688,2.20e-07,6;UBERON:0002358,2.20e-07,6;UBERON:0003684,2.20e-07,6;UBERON:0001178,2.20e-07,6;UBERON:0001013,3.45e-07,14 | |||
|phase1_expression=9.08391896352783,10.7050261945492,12.8268507727334,8.00586386825043,14.7497161161005,5.23403114460221,12.6649939084155,0,0,0.245733936501509,0,0.218441372130172,4.22027165165526,0.37129905888014,1.98838425436749,0,1.20538905604795,0.730310090387373,0,2.09305798730539,4.08001382488506,5.95563970808367,0,0.273748850145768,0.87879847716362,0.0764134057479513,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,2.68280343881454,3.06870148424473,5.42158728576849,8.02140657017423,6.51809335323707,0.795285947051099,10.2193322763554,0.472674085820339,1.33037638477538,2.10803485663503,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,23.8546536813753,4.93858995491861,1.72131935057184,20.078563452417,6.02936249737207,1.68203280042692,10.6748995729705,9.62003438826924,2.17847724779836,2.2900814251847,1.30769522490767,7.26515652695671,4.03323147135999,1.40592859100278,0.312160076830321,0,1.19558944441441,0.117434498643765,0.647491777472526,0.421352420106746,0.204154171254893,0.61417158655884,1.54988671763648,20.1960485737949,17.308685049499,5.46096817162816,12.9351265526923,0.673344455816265,1.7516592782075,0.277064115484183,4.82875382968922,5.82326812018137,9.6152357700222,0.907457465280168,3.7671823494661,5.76604949810132,9.32500365102072,6.90209520994125,2.98852334791473,5.92573242104947,5.95573940261087,6.91982962189192,4.67697624773753,3.28163906517349,6.44349290496095,6.30419621593366,9.9402685904652,1.5112814734146,1.01736355386293,0,0.272746120590835,0,0,0,0,0.10366105501537,0.504641701751257,0,1.56449532329816,2.57296375277154,0,2.3218396401599,1.44375896333917,0,0,0,0,0,0,0,0,0,0,2.80483547606892,7.8199062152966,14.7008711385542,0,0,0,0,0,0.514703430895577,0,0,0,0,1.3032332212413,3.11980435583874,0,0,1.05667824812239,0.144366447761074,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,1.68196626518041,3.92364061949952,1.1734125731352,4.91232519879556,7.15312891703765,5.071816515336,7.97814349754611,3.12022310734098,0.771622122786426,0,2.1313774321288,3.86040582876998,22.7901074264406,4.11620168390384,1.62868092146868,4.6200953336531,3.16780749173372,0.904318131178758,0,0.499864955910285,0,0,0,5.03212196532324,12.6348129417525,0,1.59259437334337,1.43833425785268,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,1.2269149171914,1.00034104211935,1.08506009479894,29.5318623373746,22.4820525884424,14.6663245981559,5.03708084468667,7.82459859292069,9.09630016223939,3.10419213877515,3.98535359121262,6.45292089895961,1.65078867489357,8.02784745597236,9.26487244289311,0,0,0,0.303127571446259,3.32870879020994,6.65258645325297,15.6307918925829,6.90578879796281,26.1013887822758,20.2459855824008,5.11707249066703,23.6455264081103,14.8418066444991,0.925258162815933,6.21466038595945,1.31403449622095,1.03850885836724,1.97557643381931,0,0.200506470303285,0,4.36294903025506,3.09554985611419,4.06485686374215,0,0.0770153371044148,0,0,0.105551628892876,0,0,0.431831832204279,1.54227252690289,0.812839312631559,3.51182841698397,0,0,0.223874754722178,0,0,0,0.984043937099117,0,0.309123034943167,1.09883357782012,0.82509499920588,1.14853107599234,0.650060246036521,6.42735719376638,1.16004861950546,0.616194468458578,1.99554777143968,1.10269257987624,2.25582514223375,3.48040065394148,1.96021243057032,8.90320356467373,0.330569830721956,0.384380134730212,0.255225424989168,0,1.39453664789186,11.6480568327337,0,2.46426864140871,1.59691809095107,0,1.29726953372744,0.715624433709956,1.48863347743867,2.21465597303108,7.43457756302917,2.303080121802,0.855877976067841,2.54562598340749,3.13979456079692,1.97859703341646,9.60879604076192,4.24124648444471,0.606547444719948,3.17020642346017,2.10629228119491,3.90106991271672,1.46228093778771,0,3.68549760801562,9.75697480480618,10.1707304958219,2.75682671773062,0,1.75380354101505,3.47265320560013,2.62357900818653,1.62328301570163,2.78841148289775,2.25356482025793,2.00775893085672,2.25972794330179,1.07001315444375,1.06428319221179,2.11107635297664,2.96365403663912,0.75894634753143,1.04980416073495,0,0.670302275535787,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0.296964680832639,0,0,0,0,0,0,0.796991953004279,0,0,0,0,7.46495010388338,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69290568708354,0,0,0,0,0.638002319463839,5.03786763710243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,12.0386647094818,0,0,0,0,0.394584402849391,3.62972148145992,0.30607276163049,0.379119477770928,0,0,0,0.330991955875499,0,0,0,0.138674673013139,0.173559738335131,0,0,0.698906672968121,0.171986032471617,0,0.0730893170861856,0.0821154570532092,0.290967049465258,0.0882561266915003,4.74559555639118,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| |||
|short_description=p36@COL1A1 | |||
}} |
Revision as of 16:13, 20 January 2014
Short description: | p36@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_36_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -93bp_to_ENST00000476387_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.87e-27 | 76 |
multi fate stem cell | 1.46e-19 | 427 |
somatic stem cell | 1.29e-18 | 433 |
stem cell | 2.10e-17 | 441 |
muscle precursor cell | 8.79e-16 | 58 |
myoblast | 8.79e-16 | 58 |
multi-potent skeletal muscle stem cell | 8.79e-16 | 58 |
muscle cell | 1.42e-15 | 55 |
electrically responsive cell | 8.74e-13 | 61 |
electrically active cell | 8.74e-13 | 61 |
smooth muscle cell | 8.68e-12 | 43 |
smooth muscle myoblast | 8.68e-12 | 43 |
connective tissue cell | 1.71e-10 | 361 |
mesenchymal cell | 4.43e-09 | 354 |
preadipocyte | 9.62e-09 | 12 |
stromal cell | 4.01e-08 | 28 |
cardiocyte | 4.82e-08 | 16 |
skin fibroblast | 1.20e-07 | 23 |
mesenchymal stem cell of adipose | 2.27e-07 | 8 |
vascular associated smooth muscle cell | 3.29e-07 | 32 |
extracellular matrix secreting cell | 4.08e-07 | 15 |
motile cell | 4.18e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 2.24e-16 | 62 |
striated muscle tissue | 2.24e-16 | 62 |
myotome | 2.24e-16 | 62 |
muscle tissue | 2.04e-15 | 64 |
musculature | 2.04e-15 | 64 |
musculature of body | 2.04e-15 | 64 |
dense mesenchyme tissue | 4.18e-15 | 73 |
somite | 8.64e-15 | 71 |
presomitic mesoderm | 8.64e-15 | 71 |
presumptive segmental plate | 8.64e-15 | 71 |
dermomyotome | 8.64e-15 | 71 |
trunk paraxial mesoderm | 8.64e-15 | 71 |
paraxial mesoderm | 2.22e-14 | 72 |
presumptive paraxial mesoderm | 2.22e-14 | 72 |
epithelial vesicle | 1.12e-13 | 78 |
multilaminar epithelium | 5.39e-12 | 83 |
connective tissue | 1.20e-10 | 371 |
trunk mesenchyme | 1.22e-09 | 122 |
mesenchyme | 7.51e-09 | 160 |
entire embryonic mesenchyme | 7.51e-09 | 160 |
omentum | 2.20e-07 | 6 |
peritoneum | 2.20e-07 | 6 |
abdominal cavity | 2.20e-07 | 6 |
visceral peritoneum | 2.20e-07 | 6 |
adipose tissue | 3.45e-07 | 14 |