FFCP PHASE1:Hg19::chr17:38613595..38613628,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C353 | |||
|description=CAGE_peak_at_chr17:38613595..38613628,+ | |||
|id=chr17:38613595..38613628,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.92e-20!180;CL:0000057!2.12e-16!75;CL:0000222!1.14e-10!119;CL:0000183!5.59e-10!59;CL:0000680!9.09e-10!57;CL:0000056!9.09e-10!57;CL:0000355!9.09e-10!57;CL:0000187!1.43e-08!54;CL:0000393!2.27e-08!60;CL:0000211!2.27e-08!60;CL:0000192!6.42e-08!42;CL:0000514!6.42e-08!42;CL:0002334!6.47e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0002334;9.34e-11;12!CL:0000057;8.85e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.66e-16,76;CL:0002334,6.38e-11,12;CL:0000048,9.48e-10,427;CL:0000723,4.03e-09,433;CL:0000034,2.52e-08,441;CL:0000680,3.84e-08,58;CL:0000056,3.84e-08,58;CL:0000355,3.84e-08,58;CL:0000136,5.59e-07,15;CL:0000192,5.87e-07,43;CL:0000514,5.87e-07,43;CL:0000187,9.46e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!4.93e-14!143;UBERON:0002100!1.99e-13!216;UBERON:0000490!4.50e-12!138;UBERON:0002049!4.90e-11!79;UBERON:0007798!4.90e-11!79;UBERON:0004872!2.28e-10!84;UBERON:0000914!3.77e-10!83;UBERON:0002329!3.77e-10!83;UBERON:0003077!3.77e-10!83;UBERON:0003059!3.77e-10!83;UBERON:0007282!3.77e-10!83;UBERON:0009618!3.77e-10!83;UBERON:0007285!3.77e-10!83;UBERON:0002385!6.75e-10!63;UBERON:0001015!6.75e-10!63;UBERON:0000383!6.75e-10!63;UBERON:0003914!7.87e-10!118;UBERON:0001134!1.18e-09!61;UBERON:0002036!1.18e-09!61;UBERON:0003082!1.18e-09!61;UBERON:0004290!4.97e-09!70;UBERON:0000055!2.07e-08!69;UBERON:0003104!3.40e-08!238;UBERON:0009142!3.40e-08!238;UBERON:0000486!4.71e-08!82;UBERON:0000475!5.03e-08!365;UBERON:0001981!1.01e-07!60;UBERON:0007500!1.01e-07!60;UBERON:0004537!1.01e-07!60;UBERON:0006965!1.01e-07!60;UBERON:0004535!1.20e-07!110;UBERON:0001009!1.54e-07!113;UBERON:0001013!4.13e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;5.56e-09;14!UBERON:0004457;2.83e-08;9!UBERON:0000042;2.83e-08;9!UBERON:0002384;1.10e-07;198!UBERON:0003688;1.81e-07;6!UBERON:0002358;1.81e-07;6!UBERON:0003684;1.81e-07;6!UBERON:0001178;1.81e-07;6!UBERON:0004905;2.24e-07;8!UBERON:0000982;2.24e-07;8!UBERON:0004770;2.24e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.73e-11,160;UBERON:0009142,1.73e-11,160;UBERON:0005256,8.27e-10,122;UBERON:0001013,4.95e-09,14;UBERON:0000490,6.19e-08,148;UBERON:0002100,6.60e-08,199;UBERON:0001134,9.26e-08,62;UBERON:0002036,9.26e-08,62;UBERON:0003082,9.26e-08,62;UBERON:0002385,9.34e-08,64;UBERON:0001015,9.34e-08,64;UBERON:0000383,9.34e-08,64;UBERON:0003688,1.70e-07,6;UBERON:0002358,1.70e-07,6;UBERON:0003684,1.70e-07,6;UBERON:0001178,1.70e-07,6;UBERON:0004905,2.16e-07,8;UBERON:0000982,2.16e-07,8;UBERON:0004770,2.16e-07,8;UBERON:0007503,3.13e-07,78;UBERON:0007524,5.25e-07,73;UBERON:0002329,9.77e-07,71;UBERON:0003059,9.77e-07,71;UBERON:0007282,9.77e-07,71;UBERON:0004290,9.77e-07,71;UBERON:0009618,9.77e-07,71 | |||
|phase1_expression=8.90224058425727,13.4883330051319,8.88012745804618,7.00513088471913,4.91657203870017,11.3404008133048,2.53299878168311,1.89515962028049,4.17897005119742,0.737201809504527,0,0,0.263766978228454,4.82688776544182,7.62213964174206,4.70627602516243,2.41077811209591,3.65155045193687,1.46379839637152,0.246242116153576,1.42800483870977,0,0,0,0.627713197974014,0.152826811495903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447830948479849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0,0,0,0,0,0.267540828089713,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0.236777252044017,0,0,0,0.144824403882799,0,0.670700859703636,0.895037932904712,9.75885711438329,6.01605492763067,10.8634889220618,0,2.91980922181582,0.472674085820339,1.55210578223795,0.614843499851882,0.851363990735132,0,0.370784442784429,0,0,0,0,0,0,0.596287222100115,0,0.694281003215189,0,1.67799774483962,4.12677062910101,0.208994966536811,0.258416759169329,0.71153252537342,0.66944122552934,1.61131726843659,1.52054421143703,2.4406205754817,0.735326160691737,5.67099363517232,1.3394959242612,0.22452937262617,0.563057402416611,0,0,1.09921046358244,0,0,0,2.98183171017191,1.39293562831038,0.662045904066094,1.43418310374407,1.77334191099179,3.36406560085384,0,3.94668077467456,0.933633106199299,0.538842688278752,0.326923806226917,2.72443369760877,3.45705554687999,0.468642863667593,0.936480230490962,0,1.04614076386261,0.23486899728753,0.323745888736263,0.140450806702248,2.44985005505872,1.10550885580591,6.30287265172169,7.12801714369232,7.66527480763526,0,4.31170885089743,0.841680569770331,0.375355559615893,0.277064115484183,1.75591048352335,19.3087311353382,8.56356935767602,0.567160915800105,1.07633781413317,6.19316427573846,6.78182083710598,2.10063767259082,4.94652140344507,0.772921620136887,6.32797311527405,1.5189869901714,1.94874010322397,0.252433774244115,2.66944706062668,6.95078044320891,3.19508633264953,2.21654616100809,3.89989362314122,0,0,0,0.243947412259191,0,0.116193942869518,0.10366105501537,0.504641701751257,0,0,4.5026865673502,0,4.64367928031979,4.33127689001751,0,0,0,0.110293972732394,0,0,0,0,0,2.95262181849859,1.40241773803446,1.6462960453256,0,2.53510069643662,4.91413608338813,2.36315962672562,0,0.122988438543114,0.514703430895577,0.109750285408626,0,0,0.185176890317059,0.651616610620649,0,1.44331342025273,0,1.05667824812239,0.577465791044295,2.31492756288305,0.761016608938393,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0.207328115540772,0,0,0,0,0,1.71072446022705,0,0,0,1.34557301214433,0.43596006883328,2.71351657537515,0.387815147273333,3.57656445851882,3.381211010224,4.25500986535793,2.08014873822732,2.57207374262142,5.67396528093113,1.5985330740966,2.28764789853036,2.71310802695722,2.46972101034231,0.325736184293735,2.84313558994037,3.95975936466715,3.61727252471503,2.61460037580088,5.29856853264902,0,0,0,1.67737398844108,3.44585807502342,0,4.34343920002738,8.83548186966649,1.61154866915906,0,0,0,0,0.508189248444927,0,0,0.335032530668698,0.637938751653163,0,0,0,15.3364364648925,15.0051156317903,7.32415563989286,5.40724239980099,17.664469890919,8.51593041183247,3.27995961979597,0.902838299183157,6.82222512167955,1.03473071292505,1.99267679560631,2.02806085395873,3.30157734978715,3.13281851940385,2.74514739048685,0,0,0,1.5156378572313,3.32870879020994,0.604780586659361,6.4508030032882,1.84154367945675,8.98112302185835,14.2234455673828,7.67560873600055,7.39928037260594,7.42090332224955,1.23367755042124,3.9063579568888,1.72467027628999,4.15403543346897,4.18357362455853,0.241718899183244,0.200506470303285,0.184161977871793,1.7222167224691,2.36718518408732,1.57349297951309,0.902399225814824,0.15403067420883,0.784349769176855,0,0.105551628892876,0,0.510281115829547,1.0795795805107,1.54227252690289,1.62567862526312,2.50844886927427,0,0,0,0,0,0,0,0,1.64865618636356,0,0.165018999841176,0,0,8.03419649220798,2.22342652071881,1.07834031980251,1.84204409671355,0,1.50388342815583,4.78555089916954,0.852266274161009,0.890320356467374,0.330569830721956,0.192190067365106,0,0.2023155617111,4.18360994367557,2.83331112147576,1.3940745403212,0.924100740528266,0,0.869932992075073,2.03856641014312,1.00187420719394,6.32669227911434,5.37845022021834,3.24071329670502,1.535386747868,2.56763392820352,1.90921948755562,0.78494864019923,1.61885211824983,2.74537029736055,0.471249609382746,0.808729926293264,0,1.68503382495592,0.975267478179181,2.43713489631284,3.16950440270266,1.63799893689583,3.81794666275024,0,0,3.3171948762061,0.876901770507525,1.73632660280006,3.27947376023316,0,0.6196469961995,0.281695602532241,0.143411352204052,0.491245205065606,0,2.12856638442359,17.9441490003015,12.5132059324763,0.379473173765715,0.699869440489966,0.192444225451024,1.34060455107157,0,1.31801321087491,0.43050537267123,0,0.443430153536676,0.918893600827838,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0.185803175125719,0,0,0,0,0,0,0.324621940274555,0,0.228234679033192,0,0,0.1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| |||
|short_description=p@chr17:38613595..38613628,+ | |||
}} |
Revision as of 15:10, 20 January 2014
Short description: | p@chr17:38613595..38613628, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:38613595..38613628, + |
Coexpression cluster: | C353_tenocyte_Nucleus_Chondrocyte_Anulus_Fibroblast_Synoviocyte_tridermal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.66e-16 | 76 |
preadipocyte | 6.38e-11 | 12 |
multi fate stem cell | 9.48e-10 | 427 |
somatic stem cell | 4.03e-09 | 433 |
stem cell | 2.52e-08 | 441 |
muscle precursor cell | 3.84e-08 | 58 |
myoblast | 3.84e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.84e-08 | 58 |
fat cell | 5.59e-07 | 15 |
smooth muscle cell | 5.87e-07 | 43 |
smooth muscle myoblast | 5.87e-07 | 43 |
muscle cell | 9.46e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.73e-11 | 160 |
entire embryonic mesenchyme | 1.73e-11 | 160 |
trunk mesenchyme | 8.27e-10 | 122 |
adipose tissue | 4.95e-09 | 14 |
unilaminar epithelium | 6.19e-08 | 148 |
trunk | 6.60e-08 | 199 |
skeletal muscle tissue | 9.26e-08 | 62 |
striated muscle tissue | 9.26e-08 | 62 |
myotome | 9.26e-08 | 62 |
muscle tissue | 9.34e-08 | 64 |
musculature | 9.34e-08 | 64 |
musculature of body | 9.34e-08 | 64 |
omentum | 1.70e-07 | 6 |
peritoneum | 1.70e-07 | 6 |
abdominal cavity | 1.70e-07 | 6 |
visceral peritoneum | 1.70e-07 | 6 |
articulation | 2.16e-07 | 8 |
skeletal joint | 2.16e-07 | 8 |
articular system | 2.16e-07 | 8 |
epithelial vesicle | 3.13e-07 | 78 |
dense mesenchyme tissue | 5.25e-07 | 73 |
somite | 9.77e-07 | 71 |
presomitic mesoderm | 9.77e-07 | 71 |
presumptive segmental plate | 9.77e-07 | 71 |
dermomyotome | 9.77e-07 | 71 |
trunk paraxial mesoderm | 9.77e-07 | 71 |