FFCP PHASE1:Hg19::chr14:58817788..58817805,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=5926 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9885 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=-209bp_to_ENST00000553355_5end | |||
|description=CAGE_peak_5_at_ARID4A_5end | |||
|id=chr14:58817788..58817805,+ | |||
|ontology_enrichment_celltype=CL:0002032!1.62e-13!165;CL:0000837!1.62e-13!165;CL:0000037!7.54e-13!172;CL:0000566!7.54e-13!172;CL:0000738!8.75e-12!140;CL:0002031!4.18e-11!124;CL:0002087!4.23e-11!119;CL:0000988!5.18e-11!182;CL:0000763!6.87e-08!112;CL:0000049!6.87e-08!112 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002032,4.64e-09,161;CL:0000837,4.64e-09,161;CL:0000037,7.16e-09,168;CL:0000738,9.08e-09,136;CL:0002087,5.01e-08,115;CL:0000988,6.63e-08,177 | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.24e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.44e-10!57;UBERON:0005068!2.44e-10!57;UBERON:0006241!2.44e-10!57;UBERON:0007135!2.44e-10!57;UBERON:0001017!4.36e-09!82;UBERON:0002780!5.86e-09!41;UBERON:0001890!5.86e-09!41;UBERON:0006240!5.86e-09!41;UBERON:0003080!2.23e-08!42;UBERON:0002616!3.67e-08!59;UBERON:0005743!6.15e-08!86;UBERON:0000073!8.73e-08!94;UBERON:0001016!8.73e-08!94;UBERON:0000955!1.21e-07!69;UBERON:0006238!1.21e-07!69;UBERON:0002020!1.87e-07!34;UBERON:0003528!1.87e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;3.01e-16;22!UBERON:0002791;2.95e-15;32!UBERON:0003528;1.78e-14;34!UBERON:0002020;1.78e-14;34!UBERON:0000956;7.00e-14;25!UBERON:0000203;7.00e-14;25!UBERON:0001869;8.32e-14;32!UBERON:0002780;8.83e-14;41!UBERON:0001890;8.83e-14;41!UBERON:0001950;2.82e-13;20!UBERON:0001893;1.23e-12;34!UBERON:0000073;1.78e-12;53!UBERON:0002616;1.78e-12;53!UBERON:0000955;8.62e-09;68!UBERON:0001017;4.42e-08;75!UBERON:0002784;8.51e-08;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.43e-23,56;UBERON:0005068,2.43e-23,56;UBERON:0006241,2.43e-23,56;UBERON:0007135,2.43e-23,56;UBERON:0000073,2.55e-21,53;UBERON:0002616,2.55e-21,53;UBERON:0002780,1.04e-18,41;UBERON:0001890,1.04e-18,41;UBERON:0003080,1.04e-18,41;UBERON:0006240,1.04e-18,41;UBERON:0003528,8.19e-18,34;UBERON:0002020,8.19e-18,34;UBERON:0002791,3.27e-17,32;UBERON:0002619,1.09e-16,22;UBERON:0001017,1.29e-16,81;UBERON:0001893,6.61e-16,34;UBERON:0000955,1.10e-15,68;UBERON:0006238,1.10e-15,68;UBERON:0001869,1.56e-15,32;UBERON:0002346,2.45e-15,86;UBERON:0003075,2.62e-15,82;UBERON:0007284,2.62e-15,82;UBERON:0000956,2.90e-14,25;UBERON:0000203,2.90e-14,25;UBERON:0001016,4.63e-14,89;UBERON:0001950,1.01e-13,20;UBERON:0003056,1.41e-11,61;UBERON:0010371,4.24e-11,104;UBERON:0010314,5.80e-09,132;UBERON:0007023,8.95e-08,114;UBERON:0002784,1.83e-07,4 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.563817616383885,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0.730310090387373,0.487932798790507,0,0,0,0.286235987131057,0.273748850145768,0.125542639594803,0.534893840235659,0.738905305049512,0.393553906568396,0,0,0.309632246632152,0,0,0,0.154934401160603,0.995184627411951,0,0.553995408531877,2.00544447470142,1.51907609501096,0.223915474239924,0.32389366601898,0.515151135268373,2.18097358169347,2.26725566213286,1.21292030593908,0.697287110717054,0.822335776043652,1.54853185447552,0.575384784644301,0.512321413058201,0,1.72372840368309,1.29096936716765,2.70852973188684,2.25890807451126,0.545812300115692,0,0.612167784741805,0.320929027076094,0,0.659702600373432,0.199463657621632,0,1.45104619314292,0.56738522469114,0.622822248995575,2.00998932205395,2.60741459210101,0.434377689410233,0.605399502633369,0.368277635987565,0,0,0.212604299965044,0,0.112328631146495,0.150176892841506,0.64290234678832,0,0.79566670879636,0.730656615058536,0,0.546138611262131,0.889509253863555,0.426730222566507,0,0.574752439954483,0,0.954053754535364,1.70763890732835,2.34894875748376,1.14681968437569,0,0,0.526768169550154,0.983548850569165,2.75107533924415,2.46721798799411,0,0,0.473447805734733,1.94826728407911,0.557052284425868,0.589211814949674,0.221533894583621,1.62482318259009,0.384273959177026,0.390178042679635,1.64437904603676,1.10540007114339,0.869409257205157,0.444859689486181,0,0,0.566546713487831,0.383220493601921,0,0.506039384039006,0.318565414324097,0,0.950452044448374,0.150575119077773,0,0,0,0,0.80642697289893,2.94184215361858,2.02754165435919,0,1.34140171940727,0,0.361439152384566,0,0.289693037921647,0,0,0.0945348171640679,0,0.87834785693126,0,0,0,0,0.348259474598534,0.531831842075461,0.238490624305342,0,0,0,0,0,0,0,0.275118041940067,0,0.258416759169329,0.35576626268671,0.66944122552934,0.402829317109147,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0.993943903390637,0,0.264818361626438,0.286836620748814,0.709336764396714,0,0,0.49333509683432,0,0,0,0,0.576175924479999,0,0.312160076830321,0,0.448346041655403,0.117434498643765,0,0,0,0.61417158655884,0,0,0.989067717114227,0,0,0,0,0,0,0,0,0,1.25572744982203,0.213557388818567,0,0.300091096084402,0.206105058476878,0.772921620136887,0.37223371266318,0.506328996723799,0.0974370051611986,0.504867548488229,0.0920498986422993,0.161646056818812,0,0.10075209822764,0.339121184620975,0,0,0,0.365921118388786,0.132529768321485,0.232387885739037,0.621966330092223,0,0.72995471815166,0,0,0,0,1.44375896333917,0.354920400119532,0.168584690078102,0.723033089650446,0.220587945464788,0.217879444092406,0.237270619111097,0,0,0,0,0,0,0,1.26755034821831,0.982827216677626,0.590789906681404,1.32438929824395,0.368965315629341,0.171567810298526,0,0,0.703702806881416,0,0,0,0,0.231860809950154,0,0,0,0.761016608938393,0,0,0,0,0.297262324577456,0,0,0,0.0895585227028483,0,0,0.985326475791887,0.616339038092582,0.207328115540772,0.288239906833923,0.12624243342638,0.126995788584338,0.381988425558278,0,0,0.205654985406647,0,0.571652865261156,0,0,0.1466765716419,0,0,0,0.26593811658487,0,0,0,0,0.57191197463259,0,0,0,0,0,0,0,0.799783929456456,1.2162378064119,1.00451418286425,6.32501818449095,0.239624855491583,0,0,0,0,0,0.336255431980582,1.37921532141349,3.01878604803324,1.92514554419623,0,0,0.773288812777695,0.670065061337395,2.55175500661265,2.24702107184155,11.966458368161,0.828831026872071,0.24538298343828,0.500170521059677,0,0.831883446123229,0.892144943985809,0.473107245101804,0.35142424497814,0,0,0,0,0,0.173767228936166,0,0,0.206768026122887,0.431428401637234,0.213455115606889,0,0,0,0,0.460385919864187,0.841980283299221,0.128139149255701,0,0.321707842287215,0,0.308419387605311,0,0.328508624055237,1.55776328755086,0,0.483437798366489,0.200506470303285,0.460404944679482,0,0.364182336013434,0.524497659837696,0,0.385076685522074,0,0,0.105551628892876,0,0.170093705276516,0.215915916102139,0,0,0,0,0,0,0.657779629937804,0.261435451024901,0.256450125116389,0,0,0.309123034943167,0.457847324091717,0.165018999841176,0,0,0,0.096670718292122,0.154048617114644,0,0.137836572484531,0.107420244868274,0.725083469571143,0.426133137080504,0.0890320356467374,0.165284915360978,0,0.127612712494584,0.2023155617111,0,0.31481234683064,0,0,0.532306030317022,0,0.18532421910392,0.143124886741991,0,0.316379424718726,0,0,0.42793898803392,0,0,0,0,0.117812402345686,0,0,0,0,0.243713489631284,0,0.545999645631943,0.282810863907425,0,0,0,0,0,0,0,0,0,0.286822704408103,0.294747123039363,0,0.354761064070598,0.422215270595328,1.64647446479951,0,0,0.0962221127255121,0,0,0.282431402330337,0,0,0,0.689170200620878,0,0,0,0.476463550915578,0,0,0,0.79312517629427,0.640944426764839,0,0.245040215981032,2.04383492638291,0.721346064882224,0.569134746787313,1.27541018183058,0.399158742865633,0,1.2700414963433,1.62310970137278,1.40398589056729,1.36940807419915,0.313359791546046,0,0.677167111206413,0.963528450622197,3.02699560786571,0.425846237690326,0.343505344755765,0.307240764308458,0.447352215784832,0,0.195388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| |||
|short_description=p5@ARID4A | |||
}} |
Revision as of 20:19, 11 January 2014
Short description: | p5@ARID4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_5_at_ARID4A_5end |
Coexpression cluster: | NA |
Association with transcript: | -209bp_to_ENST00000553355_5end |
EntrezGene: | ARID4A |
HGNC: | 9885 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic oligopotent progenitor cell | 4.64e-09 | 161 |
hematopoietic multipotent progenitor cell | 4.64e-09 | 161 |
hematopoietic stem cell | 7.16e-09 | 168 |
leukocyte | 9.08e-09 | 136 |
nongranular leukocyte | 5.01e-08 | 115 |
hematopoietic cell | 6.63e-08 | 177 |
Ontology term | p-value | n |
---|---|---|
neural tube | 2.43e-23 | 56 |
neural rod | 2.43e-23 | 56 |
future spinal cord | 2.43e-23 | 56 |
neural keel | 2.43e-23 | 56 |
regional part of nervous system | 2.55e-21 | 53 |
regional part of brain | 2.55e-21 | 53 |
regional part of forebrain | 1.04e-18 | 41 |
forebrain | 1.04e-18 | 41 |
anterior neural tube | 1.04e-18 | 41 |
future forebrain | 1.04e-18 | 41 |
brain grey matter | 8.19e-18 | 34 |
gray matter | 8.19e-18 | 34 |
regional part of telencephalon | 3.27e-17 | 32 |
regional part of cerebral cortex | 1.09e-16 | 22 |
central nervous system | 1.29e-16 | 81 |
telencephalon | 6.61e-16 | 34 |
brain | 1.10e-15 | 68 |
future brain | 1.10e-15 | 68 |
cerebral hemisphere | 1.56e-15 | 32 |
neurectoderm | 2.45e-15 | 86 |
neural plate | 2.62e-15 | 82 |
presumptive neural plate | 2.62e-15 | 82 |
cerebral cortex | 2.90e-14 | 25 |
pallium | 2.90e-14 | 25 |
nervous system | 4.63e-14 | 89 |
neocortex | 1.01e-13 | 20 |
pre-chordal neural plate | 1.41e-11 | 61 |
ecto-epithelium | 4.24e-11 | 104 |
structure with developmental contribution from neural crest | 5.80e-09 | 132 |
adult organism | 8.95e-08 | 114 |
regional part of diencephalon | 1.83e-07 | 4 |