FFCP PHASE1:Hg19::chr14:21538252..21538273,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55701 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25516 | |||
|TSSclassifier=weak | |||
|UniProt=Q8TER5 | |||
|association_with_transcript=-155bp_to_ENST00000298694_5end | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_6_at_ARHGEF40_5end | |||
|id=chr14:21538252..21538273,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.23e-21!42;CL:0000860!5.42e-19!45;CL:0000766!3.32e-18!76;CL:0000763!7.83e-14!112;CL:0000049!7.83e-14!112;CL:0000557!9.58e-14!71;CL:0000839!3.45e-13!70;CL:0002194!9.09e-12!63;CL:0000576!9.09e-12!63;CL:0000040!9.09e-12!63;CL:0000559!9.09e-12!63;CL:0002009!1.82e-11!65;CL:0000094!1.90e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.56e-56;33!CL:0002057;4.56e-56;33!CL:0000473;2.17e-40;39!CL:0000234;2.17e-40;39!CL:0000576;5.21e-30;48!CL:0000766;3.37e-24;69!CL:0000094;1.20e-14;8!CL:0000763;1.97e-14;100!CL:0000775;6.46e-11;3!CL:0000081;1.97e-10;11!CL:0000771;4.62e-08;2!CL:0002087;6.85e-07;104!CL:0000738;6.98e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.75e-56,42;CL:0002057,4.75e-56,42;CL:0000766,8.48e-54,72;CL:0000473,5.07e-48,48;CL:0000234,5.07e-48,48;CL:0000557,2.07e-42,67;CL:0000839,3.45e-40,66;CL:0000763,7.87e-37,108;CL:0000049,7.87e-37,108;CL:0002194,8.57e-37,59;CL:0000576,8.57e-37,59;CL:0000040,8.57e-37,59;CL:0000559,8.57e-37,59;CL:0002009,2.40e-35,61;CL:0000738,6.64e-24,136;CL:0002032,2.42e-21,161;CL:0000837,2.42e-21,161;CL:0000988,5.53e-21,177;CL:0000037,4.97e-20,168;CL:0002031,2.16e-18,120;CL:0002087,2.92e-15,115;CL:0000094,1.36e-14,8;CL:0002320,6.63e-12,361;CL:0000775,5.28e-11,3;CL:0000134,7.83e-11,354;CL:0000081,2.16e-10,11;CL:0000219,7.48e-09,386;CL:0000048,4.14e-08,427;CL:0000771,4.65e-08,2;CL:0000034,4.83e-08,441;CL:0000723,7.86e-08,433 | |||
|ontology_enrichment_development_v019=CL:0002057;3.90e-41;42!CL:0000049;2.37e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.30e-16!102;UBERON:0003061!3.30e-16!102;UBERON:0002193!1.56e-13!112;UBERON:0001474!1.86e-13!86;UBERON:0002371!3.81e-13!80;UBERON:0004765!4.17e-12!101;UBERON:0001434!4.17e-12!101;UBERON:0002405!8.24e-11!115;UBERON:0002204!1.37e-09!167;UBERON:0003081!3.82e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,7.15e-43,98;UBERON:0003061,7.15e-43,98;UBERON:0002193,5.98e-38,108;UBERON:0001474,1.41e-37,82;UBERON:0002371,2.17e-36,76;UBERON:0004765,1.25e-35,90;UBERON:0002405,2.51e-32,93;UBERON:0001434,3.83e-31,100;UBERON:0003081,1.38e-18,203;UBERON:0002204,4.67e-16,167;UBERON:0002384,2.98e-11,371;UBERON:0000926,1.38e-09,315;UBERON:0004120,1.38e-09,315;UBERON:0006603,1.38e-09,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0.218441372130172,0.527533956456907,0.123766352960047,0.662794751455832,1.34465029290355,0.602694528023977,0.730310090387373,0,0.61560529038394,0.612002073732759,0.626909442956176,0.286235987131057,0.273748850145768,0.376627918784408,0,0,0,1.18009283054671,0.767658796194425,0.928896739896456,0,0.30120591877825,0,0,0,0,2.21598163412751,1.40381113229099,0.868043482863407,0,0,0,6.25212426752128,2.64513160582167,4.85168122375632,2.32429036905685,2.46700732813095,2.16794459626573,1.7261543539329,0.512321413058201,0.945928919554341,2.41321976515633,1.93645405075148,2.70852973188684,3.20011977222428,3.27487380069415,1.57306439111559,3.67300670845083,2.56743221660875,1.27867425159808,1.9791078011203,1.39624560335142,0,2.03146467040009,0.56738522469114,0.622822248995575,1.7587406567972,1.0429658368404,1.95469960234605,4.23779651843358,1.47311054395026,0.949387162322653,0.211255286311942,0,0.419317291016752,2.3589012540764,1.35159203557356,2.25015821375912,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,1.32171328579026,0,0,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.443458794925128,0.351339142772504,0.392937226493138,0.728590576585084,0,0.324547393654683,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,9.22462922052443,7.75560528296651,0.436094052142534,0,0.379891534993739,1.98613771219828,0.860509862246441,0,0,0,0.24666754841716,0.933633106199299,0,0.163461903113459,0.605429710579726,1.15235184896,0.468642863667593,0,0,0.298897361103602,0.117434498643765,0,0,0.204154171254893,0.122834317311768,0.206651562351531,0,0.494533858557114,0.910161361938026,0,0,0,0,0,0,0.150238058906597,0,0,0.213557388818567,0,0,0.515262646192195,0,0,0.506328996723799,0,0.504867548488229,0.276149695926898,0,0,0.302256294682921,0.508681776931463,0.193260853163297,0,0,0.121973706129595,0,0.116193942869518,0.10366105501537,0,0.36497735907583,1.56449532329816,0,0,0,0,0,0,0,0.220587945464788,0,0,0,0,0,0,0,0.4115740113314,0,1.26755034821831,0,0,0,0.122988438543114,0,0,0,0.301586917234893,0.185176890317059,0.651616610620649,0,0,0.115930404975077,0.234817388471643,0,0,0,0,0,0.246217006087397,0,0.297262324577456,0,0.503946384596579,0.141775097242386,0,0,0,0,0.792435906119034,1.86595303986695,3.60299883542404,2.27236380167484,0.190493682876507,0.763976851116555,0,0,0,0.300343057843917,0.285826432630578,0.560655421726804,0,0.1466765716419,0,0,0,0.531876233169741,0,0.257207374262142,0,0.532844358032199,0.142977993658148,0,0,0.65147236858747,0,0,0.602878754119172,0.871533458600294,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0.256686072559497,0.254094624222463,0,0,0.167516265334349,0,5.99205619157746,2.99161459204025,6.21623270154053,0.736148950314839,1.50051156317903,0.271265023699736,0,0.178428988797162,0.157702415033935,0,0,0,0,0,0.737476674166813,0,0.587403472388222,2.74514739048685,0.620304078368662,0.647142602455851,0.320182673410333,0,0,0,0,0.153461973288062,0.280660094433074,0,0,0,0,0.771048469013278,0.532685175939381,0.164254312027618,0,0.116210378459959,0.120859449591622,0,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,1.08378575017541,0,0.254876273045038,0.831076008928724,0,0,0.261435451024901,0,0,0,0.515205058238611,0.0915694648183434,0.247528499761764,0,0.650060246036521,0,0.193341436584244,0,0.614014698904518,0,0.107420244868274,0.290033387828457,0.511359764496605,0.0890320356467374,0.165284915360978,0,0,0.10115778085555,0.464845549297286,0,0.6970372701606,0.308033580176089,0.532306030317022,0,0.55597265731176,0,0.372158369359667,0.632758849437452,0,0.255897791311334,0,0.636406495851874,0.78494864019923,0.179872457583315,0,0.353437207037059,0.202182481573316,0,0.421258456238981,0.48763373908959,0,0,0.545999645631943,0.141405431953713,0,0,0,0,0,0,0,0,0.563391205064483,0.286822704408103,0.0982490410131212,0,0,0,0.329294892959902,1.13841952129715,0.349934720244983,0.0962221127255121,0.670302275535787,0,0.376575203107117,0.86101074534246,1.68471475667626,0.886860307073351,0.459446800413919,1.01489521846434,0.764637207142375,1.13929437434833,0.714695326373367,1.64544909234478,1.29694662238543,1.08006287447623,1.58625035258854,0.427296284509893,0,0,0.185803175125719,0,0,0.159426272728822,0,0.191505370132367,0.423347165447766,0,0,0.228234679033192,0.47003968731907,0,0.169291777801603,0.481764225311099,0.201799707191048,0,0.343505344755765,0,0.223676107892416,0,0.390776190804081,1.39203086947621,0,0.270455678475983,0,0,0,0.293016358543788,0.242721043499027,0,0.284136146806413,0,0.296964680832639,0,0,0,0,0,0.844501632511974,0.19924798825107,0.276283915531148,0,0.102268682502155,0,0,0,0,0.511572370226872,0.295930216910801,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0.241192877250816,0,0.110579259931225,0,0,0,0.278847488557207,0.461701551022782,0.227884111694002,0,0,0,0,0.183195186803725,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0.216388639742091,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| |||
|short_description=p6@ARHGEF40 | |||
}} |
Revision as of 18:59, 11 January 2014
Short description: | p6@ARHGEF40 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ARHGEF40_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | -155bp_to_ENST00000298694_5end |
EntrezGene: | ARHGEF40 |
HGNC: | 25516 |
UniProt: | Q8TER5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.75e-56 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.75e-56 | 42 |
myeloid leukocyte | 8.48e-54 | 72 |
defensive cell | 5.07e-48 | 48 |
phagocyte | 5.07e-48 | 48 |
granulocyte monocyte progenitor cell | 2.07e-42 | 67 |
myeloid lineage restricted progenitor cell | 3.45e-40 | 66 |
myeloid cell | 7.87e-37 | 108 |
common myeloid progenitor | 7.87e-37 | 108 |
monopoietic cell | 8.57e-37 | 59 |
monocyte | 8.57e-37 | 59 |
monoblast | 8.57e-37 | 59 |
promonocyte | 8.57e-37 | 59 |
macrophage dendritic cell progenitor | 2.40e-35 | 61 |
leukocyte | 6.64e-24 | 136 |
hematopoietic oligopotent progenitor cell | 2.42e-21 | 161 |
hematopoietic multipotent progenitor cell | 2.42e-21 | 161 |
hematopoietic cell | 5.53e-21 | 177 |
hematopoietic stem cell | 4.97e-20 | 168 |
hematopoietic lineage restricted progenitor cell | 2.16e-18 | 120 |
nongranular leukocyte | 2.92e-15 | 115 |
granulocyte | 1.36e-14 | 8 |
connective tissue cell | 6.63e-12 | 361 |
neutrophil | 5.28e-11 | 3 |
mesenchymal cell | 7.83e-11 | 354 |
blood cell | 2.16e-10 | 11 |
motile cell | 7.48e-09 | 386 |
multi fate stem cell | 4.14e-08 | 427 |
eosinophil | 4.65e-08 | 2 |
stem cell | 4.83e-08 | 441 |
somatic stem cell | 7.86e-08 | 433 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 7.15e-43 | 98 |
blood island | 7.15e-43 | 98 |
hemolymphoid system | 5.98e-38 | 108 |
bone element | 1.41e-37 | 82 |
bone marrow | 2.17e-36 | 76 |
skeletal element | 1.25e-35 | 90 |
immune system | 2.51e-32 | 93 |
skeletal system | 3.83e-31 | 100 |
lateral plate mesoderm | 1.38e-18 | 203 |
musculoskeletal system | 4.67e-16 | 167 |
connective tissue | 2.98e-11 | 371 |
mesoderm | 1.38e-09 | 315 |
mesoderm-derived structure | 1.38e-09 | 315 |
presumptive mesoderm | 1.38e-09 | 315 |