FFCP PHASE1:Hg19::chr12:56236690..56236701,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4327 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7165 | |||
|TSSclassifier=strong | |||
|UniProt=Q99542 | |||
|association_with_transcript=4bp_to_ENST00000322569_5end | |||
|coexpression_cluster_id=C2220 | |||
|description=CAGE_peak_3_at_MMP19_5end | |||
|id=chr12:56236690..56236701,- | |||
|ontology_enrichment_celltype=CL:0002057!6.40e-33!42;CL:0000860!5.09e-30!45;CL:0002194!2.67e-29!63;CL:0000576!2.67e-29!63;CL:0000040!2.67e-29!63;CL:0000559!2.67e-29!63;CL:0002009!4.95e-28!65;CL:0000839!3.49e-25!70;CL:0000557!1.16e-24!71;CL:0000766!2.86e-22!76;CL:0000763!1.48e-11!112;CL:0000049!1.48e-11!112;CL:0002087!5.82e-11!119;CL:0002031!1.86e-09!124;CL:0000738!8.16e-08!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.20e-86;33!CL:0002057;1.20e-86;33!CL:0000473;5.24e-70;39!CL:0000234;5.24e-70;39!CL:0000576;1.65e-36;48!CL:0000766;6.69e-26;69!CL:0000763;3.90e-11;100!CL:0002087;3.13e-10;104!CL:0002541;7.91e-08;3!CL:0000738;3.26e-07;136!CL:0000136;8.22e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.98e-73,48;CL:0000234,1.98e-73,48;CL:0000860,1.42e-72,42;CL:0002057,1.42e-72,42;CL:0002194,1.39e-57,59;CL:0000576,1.39e-57,59;CL:0000040,1.39e-57,59;CL:0000559,1.39e-57,59;CL:0002009,1.54e-55,61;CL:0000839,5.84e-51,66;CL:0000557,3.99e-50,67;CL:0000766,2.72e-46,72;CL:0000763,4.54e-29,108;CL:0000049,4.54e-29,108;CL:0002087,5.83e-27,115;CL:0002031,1.33e-25,120;CL:0000738,6.30e-22,136;CL:0002032,1.23e-17,161;CL:0000837,1.23e-17,161;CL:0000037,1.15e-16,168;CL:0000988,1.59e-15,177;CL:0000134,2.79e-10,354;CL:0002320,6.01e-10,361;CL:0000219,8.97e-09,386;CL:0002541,7.65e-08,3;CL:0000048,2.45e-07,427;CL:0000723,3.86e-07,433;CL:0000034,6.96e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.33e-55;42!CL:0000049;3.34e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!1.28e-20!115;UBERON:0002371!1.41e-20!80;UBERON:0002390!8.80e-19!102;UBERON:0003061!8.80e-19!102;UBERON:0001474!2.41e-18!86;UBERON:0004765!5.45e-18!101;UBERON:0001434!5.45e-18!101;UBERON:0002193!5.49e-16!112;UBERON:0002204!1.74e-10!167;UBERON:0003081!2.07e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;7.91e-08;3!UBERON:0000920;7.91e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.39e-43,76;UBERON:0001474,5.19e-40,82;UBERON:0002405,1.84e-37,93;UBERON:0004765,5.59e-36,90;UBERON:0002390,2.89e-35,98;UBERON:0003061,2.89e-35,98;UBERON:0001434,7.76e-32,100;UBERON:0002193,1.77e-31,108;UBERON:0002204,8.47e-17,167;UBERON:0003081,5.16e-14,203;UBERON:0002384,2.24e-10,371;UBERON:0000920,7.65e-08,3;UBERON:0000926,6.06e-07,315;UBERON:0004120,6.06e-07,315;UBERON:0006603,6.06e-07,315 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0.140954404095971,0,0,0,0,0.631719873426831,0,0,0,0,0,0,0.331397375727916,0,0,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0.447830948479849,0,0.515151135268373,0.436194716338694,1.51150377475524,0.970336244751265,2.55671940596253,13.9797081927421,22.6085650753426,0.863077176966451,6.40401766322752,5.20260905754887,7.58440497620561,11.6187243045089,14.8969135253776,1.69418105588344,8.46009065179322,6.96642801779762,4.28517449319264,11.8743740018155,9.59005688698562,0.329851300186716,1.19678194572979,0,2.03146467040009,9.64554881974938,9.9651559839292,5.02497330513487,11.9941071236646,13.031330682307,4.84319602106695,7.36555271975129,8.86094684834476,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.130979075497713,0,0,0,0,0.26591592103773,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0.448346041655403,0.117434498643765,0,0.140450806702248,0.408308342509787,0,0.103325781175765,0,0,0,0,0,0,0.277064115484183,0,0,0.150238058906597,0,0,0,0,0.900273288253207,0,0,0.18611685633159,0.675105328965065,0.0974370051611986,0,0.0920498986422993,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,2.10603838625314,1.18904929830983,0,0,0.283550194484773,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0.434343920002738,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0.248107807818777,0,0,0,0.511707249066704,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0.855877976067841,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63714722689409,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0.552567831062295,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34636466614658,0.760531603454056,5.10401855571071,0.0915975934018623,5.33034776018635,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0.429226048136571,0.223171457441873,0.268733889946905,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,1.32506888912221,0,0,0,0,0.747511887973863,2.35806457649499,0,0,0,0,0,9.24830265728106,12.7851845951577,22.9759182572596,5.24596209135687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.469919589899268,1.54698931136585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0.0645889098360061,0.31037357147929,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@MMP19 | |||
}} |
Revision as of 13:56, 11 January 2014
Short description: | p3@MMP19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MMP19_5end |
Coexpression cluster: | C2220_CD14_mature_chorionic_adipose_breast_Cardiac_choriocarcinoma |
Association with transcript: | 4bp_to_ENST00000322569_5end |
EntrezGene: | MMP19 |
HGNC: | 7165 |
UniProt: | Q99542 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.98e-73 | 48 |
phagocyte | 1.98e-73 | 48 |
classical monocyte | 1.42e-72 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.42e-72 | 42 |
monopoietic cell | 1.39e-57 | 59 |
monocyte | 1.39e-57 | 59 |
monoblast | 1.39e-57 | 59 |
promonocyte | 1.39e-57 | 59 |
macrophage dendritic cell progenitor | 1.54e-55 | 61 |
myeloid lineage restricted progenitor cell | 5.84e-51 | 66 |
granulocyte monocyte progenitor cell | 3.99e-50 | 67 |
myeloid leukocyte | 2.72e-46 | 72 |
myeloid cell | 4.54e-29 | 108 |
common myeloid progenitor | 4.54e-29 | 108 |
nongranular leukocyte | 5.83e-27 | 115 |
hematopoietic lineage restricted progenitor cell | 1.33e-25 | 120 |
leukocyte | 6.30e-22 | 136 |
hematopoietic oligopotent progenitor cell | 1.23e-17 | 161 |
hematopoietic multipotent progenitor cell | 1.23e-17 | 161 |
hematopoietic stem cell | 1.15e-16 | 168 |
hematopoietic cell | 1.59e-15 | 177 |
mesenchymal cell | 2.79e-10 | 354 |
connective tissue cell | 6.01e-10 | 361 |
motile cell | 8.97e-09 | 386 |
chorionic membrane mesenchymal stem cell | 7.65e-08 | 3 |
multi fate stem cell | 2.45e-07 | 427 |
somatic stem cell | 3.86e-07 | 433 |
stem cell | 6.96e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.39e-43 | 76 |
bone element | 5.19e-40 | 82 |
immune system | 1.84e-37 | 93 |
skeletal element | 5.59e-36 | 90 |
hematopoietic system | 2.89e-35 | 98 |
blood island | 2.89e-35 | 98 |
skeletal system | 7.76e-32 | 100 |
hemolymphoid system | 1.77e-31 | 108 |
musculoskeletal system | 8.47e-17 | 167 |
lateral plate mesoderm | 5.16e-14 | 203 |
connective tissue | 2.24e-10 | 371 |
egg chorion | 7.65e-08 | 3 |
mesoderm | 6.06e-07 | 315 |
mesoderm-derived structure | 6.06e-07 | 315 |
presumptive mesoderm | 6.06e-07 | 315 |