FFCP PHASE1:Hg19::chr12:54332608..54332636,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3229 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5125 | |||
|TSSclassifier=strong | |||
|UniProt=P31276 | |||
|association_with_transcript=32bp_to_NM_017410,uc001sei.2,uc010sop.1_5end | |||
|coexpression_cluster_id=C2216 | |||
|description=CAGE_peak_1_at_HOXC13_5end | |||
|id=chr12:54332608..54332636,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.64e-20!254;CL:0000076!1.55e-11!62;CL:0000077!7.32e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0002327;1.13e-08;4!CL:0000076;5.22e-08;63!CL:0000077;6.18e-08;19!CL:0002251;1.27e-07;20!CL:0000244;1.38e-07;4!CL:0000731;1.38e-07;4!CL:0000362;2.57e-07;9!CL:0000515;9.19e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.47e-23,253;CL:0000076,1.69e-15,63;CL:0002327,1.24e-08,4;CL:0000077,5.36e-08,19;CL:0002251,1.36e-07,20;CL:0000244,1.68e-07,4;CL:0000731,1.68e-07,4;CL:0000362,3.09e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.96e-09;29 | |||
|ontology_enrichment_disease=DOID:0050687!1.84e-43!143;DOID:162!3.77e-37!235;DOID:14566!1.31e-35!239;DOID:305!2.00e-32!106;DOID:1749!4.74e-15!14;DOID:0050686!1.46e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:1749;9.59e-17;14!DOID:305;9.74e-10;106!DOID:5093;2.46e-08;4!DOID:1612;2.46e-08;4!DOID:0050687;1.11e-07;143 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,4.66e-38,143;DOID:162,4.93e-33,235;DOID:14566,7.05e-32,239;DOID:305,1.57e-29,106;DOID:1749,9.93e-17,14;DOID:5093,3.15e-08,4;DOID:1612,3.15e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0001737!9.47e-12!9;UBERON:0000310!3.01e-08!10;UBERON:0001443!2.71e-07!11;UBERON:0008947!3.58e-07!38;UBERON:0003258!3.58e-07!38;UBERON:0005153!5.99e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.27e-17;9!UBERON:0001557;5.27e-17;9!UBERON:0001911;1.13e-08;4!UBERON:0003343;5.28e-08;4!UBERON:0004785;5.28e-08;4!UBERON:0001003;7.55e-07;15!UBERON:0007376;7.55e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.39e-17,9;UBERON:0001557,1.12e-08,19;UBERON:0001911,1.24e-08,4;UBERON:0005333,1.24e-08,4;UBERON:0008425,1.24e-08,4;UBERON:0005311,1.24e-08,4;UBERON:0003343,6.72e-08,4;UBERON:0004785,6.72e-08,4;UBERON:0001003,9.35e-07,15;UBERON:0007376,9.35e-07,15;UBERON:0007383,9.35e-07,15 | |||
|phase1_expression=1.63510541343501,1.49870366723688,2.81908808191942,1.0007329835313,0.893922188854576,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.7434876022711,6.57480291304597,9.3994301654558,7.38969617307039,9.36881609597346,10.4399072408883,3.37078270400411,4.70931516300831,3.07797725557112,0,0,0,0,0,0,0,0,2.7057456479485,0,10.0970262575936,1.1240175325762,4.12168786887686,0,0,0,0,0.115930404975077,0,0,0,0,8.69224837755203,12.0188062693282,0,0,0,0,0,0,5.3735113621709,6.1033127087932,10.7347150166259,0,0,0,0,0.12624243342638,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89562613335158,10.0683398049688,9.13210912523467,0,0,0,0,0.254094624222463,0,0,0,0.637938751653163,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61384789315225,0.561320188866147,0,0.511707249066704,0.160853921143607,0,0,0,0,0,0,3.86750238693191,2.40607764363942,1.10497186723076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0.082509499920588,8.03971753194641,6.50060246036521,0,0.096670718292122,0,0,0.137836572484531,0,0.290033387828457,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42037263873893,0,0.281695602532241,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,3.01353760869861,6.73885902670502,4.43430153536676,1.1486170010348,0,0,0,0,0,0,0,0,8.11862940568796,0,2.94048259177238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0.606802608747567,0,0.568272293612826,0,0,0,0,0,0,0,8.23389091699175,0,0,1.51159648712566,0.511343412510774,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,1.04171104434093,7.17171999968805,0.724999575434793,5.57587896598948,0,2.12748913591143,0,1.74962768029953,0,0,0,0,0,0,0,1.85195387982283,14.9183406378106,0.0769502585037971,0,0.922255617552241,2.2439411102443,1.3037684630641,0.31900115973192,1.4655614944298,0,0,0,0,0,0,0,0.189753732724185,0,0,0,2.40300221437699,8.87193422942574,0,0.0884575645033392,0,0,0,0,0,0,0,0,2.93496928398135,0,0,0,0,0.063186579628488,1.50323419414493,7.05079701501281,0,0.661983911750998,0.627865836814451,0,0.284609546029793,2.63481878724963,0,4.89961987071888,1.48000651186684,0,0.171986032471617,6.67618685894687,8.18600351365278,6.15865927899069,0,1.85337866052151,0,0.685209623233754,0.19871461170299,0,3.91102765469606,0,0,11.3891477461814,5.18725501754782,3.32156128881155,0,0,0.372757606696298,2.59263438078475,3.66941356398758,4.49792239143033,7.44586988745149,0,0,0,0,0,0,0,0,0,1.79711100449092,0,0,0,0,0,0,0,0,1.67326718575073,0,0,0,0,0,0,0,0,0,18.4489078179596,0,0.0524545881349981,0,1.07572403599707,0.767660789277781,0,0,0,0,0,0,0,0,0,3.17273856256352,0,0,0,0,3.07956308191793,0.704815022316672,0,0,0,0,0,0,2.55336503108073,0,0.2506898940227,0,0,0.628216385000937,0,0,0,0,0,0,0,0.37494122388632,3.03298235083296,0.570930667089935,0.470531639396343,0,5.36207805860053,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,2.40016658797892,0,0,0,1.73357847366573,1.71553273099941,0,14.5091792327854,9.72394392160103,2.44736704506468,5.55175407352611,3.39681591877069,7.67494173525475,0,0.192914038270915,0.506827321959218,0,6.56317649289277,3.03859956177382,0,0,0,0,0,0,0,0,0,0,0,1.28874165176289,0,0,0,0,1.10086159299127,0,2.0367903594483,2.55089904122019,9.04731079090716,3.35186950783946,0,0,0,0,0,0,0,0,0,0,0,0,0,3.04257927353179,2.00548529691159,8.80457272904059,6.46943730441894,0,0,4.17724066444177,0,0.40341013740704,0,6.28576066755414,0.327543835020193,0.295712172434091,0,0,0,0.0634158101939068,0,0,0,0.703484977438482,4.98273467794422,0,0,0,0,0,0,0,0,0,1.41832609060762,1.77970243027311,0.156986185701028,0,0.840816489941367,0,0,0,0,1.89616334079272,4.06844988788438,6.60661434749802,0,0.414432328326074,0.6828739083758,0,0,0,0,0,0.68732060563215,0,0,0.447421727191169,0,0,0,0.102662806856247,0,2.4285549652957,0.233939463462106,1.19370465096821,1.18920090777569,0.11294608203896,0,0,0,0,0,0,3.29947165942276,0,0,0,0,0,0,0,6.42794178980367,0.705789743431384,3.12941330087756,0,0,0,12.3061818510684,0,0,0,0,0,0,0,0,0,0.101988829741982,0.26721740526556,2.6649520865105,0.250707539292375,0,0,0,0,0,0,0,0,0,0,0,0,0.342233301085281,0,0.215166616178029,0,0,0.426909383510862,0,0.449126010532934,0,0.122241444182866,0,0,0.402547587182052,0 | |||
|short_description=p1@HOXC13 | |||
}} |
Revision as of 13:46, 11 January 2014
Short description: | p1@HOXC13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXC13_5end |
Coexpression cluster: | C2216_keratoacanthoma_cervical_synovial_Wilms_gastric_oral_mesothelioma |
Association with transcript: | 32bp_to_NM_017410, uc001sei.2, uc010sop.1_5end |
EntrezGene: | HOXC13 |
HGNC: | 5125 |
UniProt: | P31276 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.47e-23 | 253 |
squamous epithelial cell | 1.69e-15 | 63 |
mammary gland epithelial cell | 1.24e-08 | 4 |
mesothelial cell | 5.36e-08 | 19 |
epithelial cell of alimentary canal | 1.36e-07 | 20 |
transitional epithelial cell | 1.68e-07 | 4 |
urothelial cell | 1.68e-07 | 4 |
epidermal cell | 3.09e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
larynx | 4.39e-17 | 9 |
upper respiratory tract | 1.12e-08 | 19 |
mammary gland | 1.24e-08 | 4 |
mammary bud | 1.24e-08 | 4 |
mammary ridge | 1.24e-08 | 4 |
mammary placode | 1.24e-08 | 4 |
mucosa of oral region | 6.72e-08 | 4 |
respiratory system mucosa | 6.72e-08 | 4 |
skin epidermis | 9.35e-07 | 15 |
outer epithelium | 9.35e-07 | 15 |
enveloping layer of ectoderm | 9.35e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 4.66e-38 | 143 |
cancer | 4.93e-33 | 235 |
disease of cellular proliferation | 7.05e-32 | 239 |
carcinoma | 1.57e-29 | 106 |
squamous cell carcinoma | 9.93e-17 | 14 |
thoracic cancer | 3.15e-08 | 4 |
breast cancer | 3.15e-08 | 4 |