FFCP PHASE1:Hg19::chr12:48164855..48164868,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=10411 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16629 | |||
|TSSclassifier=strong | |||
|UniProt=F8VRX1 | |||
|association_with_transcript=-32bp_to_ENST00000397089,ENST00000548919,uc009zks.2_5end | |||
|coexpression_cluster_id=C2207 | |||
|description=CAGE_peak_21_at_RAPGEF3_5end | |||
|id=chr12:48164855..48164868,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000575;9.07e-18;2!CL:0000333;6.55e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,6.48e-18,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!7.63e-07!10;DOID:1115!9.63e-07!20 | |||
|ontology_enrichment_disease_v019=DOID:3193;9.07e-18;2!DOID:962;9.07e-18;2!DOID:171;3.47e-14;10!DOID:1192;2.59e-12;3!DOID:4362;5.35e-08;5!DOID:1115;1.38e-07;20!DOID:3095;5.57e-07;22!DOID:2994;5.57e-07;22!DOID:169;8.48e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3193,9.07e-18,2;DOID:962,9.07e-18,2;DOID:171,3.97e-14,10;DOID:1192,2.59e-12,3;DOID:4362,5.35e-08,5;DOID:1115,1.33e-07,20;DOID:3095,5.91e-07,22;DOID:2994,5.91e-07,22;DOID:169,8.48e-07,6 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0003714;9.07e-18;2!UBERON:0002346;1.44e-09;4!UBERON:0000923;1.44e-09;4!UBERON:0010316;1.44e-09;4!UBERON:0005291;1.44e-09;4!UBERON:0000964;1.44e-09;4!UBERON:0010409;1.44e-09;4!UBERON:0000013;6.55e-08;5!UBERON:0002410;6.55e-08;5!UBERON:0002050;6.55e-08;5!UBERON:0005423;6.55e-08;5!UBERON:0000002;7.17e-07;6!UBERON:0001560;7.17e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003714,9.07e-18,2;UBERON:0000964,1.22e-09,4;UBERON:0010409,1.22e-09,4;UBERON:0004348,1.22e-09,4;UBERON:0005427,1.22e-09,4;UBERON:0000013,6.55e-08,5;UBERON:0002410,6.55e-08,5;UBERON:0000002,7.17e-07,6;UBERON:0001560,7.17e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.130979075497713,0,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0.945550727071745,0,0,0.347249989866585,0,0.241192877250816,0,0,0,0,0.32681539055697,2.23077990845765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0.300646838828985,0,0,0,0,0,0.284609546029793,0.138674673013139,0,0,0,0,0,0,0.0730893170861856,0,0,0.0882561266915003,0,0.137041924646751,0,0,0,0,0,0,0,0.229073192331831,0.171594997861965,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0.315222829196793,1.62609223218494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0.0620964029413835,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,1.23935764259002,1.67593475391973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376051641746286,0,0,0,0,0,0,0,0,0,0,0,0,0.351742488719241,0,0,0,0,0.227662191351298,0,0,0,0.0679697329768317,0,0,0,0,0,0,0.913158720509496,0,0,0,0,1.74362138052188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0.245148321753905,0,0.196308467114945,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.186224142887574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p21@RAPGEF3 | |||
}} |
Revision as of 13:11, 11 January 2014
Short description: | p21@RAPGEF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_21_at_RAPGEF3_5end |
Coexpression cluster: | C2207_rhabdomyosarcoma_Corneal_bronchogenic_kidney_cervical_neuroepithelioma_neuroectodermal |
Association with transcript: | -32bp_to_ENST00000397089, ENST00000548919, uc009zks.2_5end |
EntrezGene: | RAPGEF3 |
HGNC: | 16629 |
UniProt: | F8VRX1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 6.48e-18 | 2 |
Ontology term | p-value | n |
---|---|---|
neural tissue | 9.07e-18 | 2 |
cornea | 1.22e-09 | 4 |
eye surface | 1.22e-09 | 4 |
optic eminence | 1.22e-09 | 4 |
corneal primordium | 1.22e-09 | 4 |
sympathetic nervous system | 6.55e-08 | 5 |
autonomic nervous system | 6.55e-08 | 5 |
uterine cervix | 7.17e-07 | 6 |
neck of organ | 7.17e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
peripheral nerve sheath neoplasm | 9.07e-18 | 2 |
neurofibroma | 9.07e-18 | 2 |
neuroectodermal tumor | 3.97e-14 | 10 |
peripheral nervous system neoplasm | 2.59e-12 | 3 |
cervical cancer | 5.35e-08 | 5 |
sarcoma | 1.33e-07 | 20 |
germ cell and embryonal cancer | 5.91e-07 | 22 |
germ cell cancer | 5.91e-07 | 22 |
neuroendocrine tumor | 8.48e-07 | 6 |