FFCP PHASE1:Hg19::chr1:183774356..183774374,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23179 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30281 | |||
|TSSclassifier=strong | |||
|UniProt=F5H6U6 | |||
|association_with_transcript=66bp_to_ENST00000539189_5end | |||
|coexpression_cluster_id=C67 | |||
|description=CAGE_peak_3_at_RGL1_5end | |||
|id=chr1:183774356..183774374,+ | |||
|ontology_enrichment_celltype=CL:0000557!9.37e-09!71;CL:0000839!2.29e-08!70;CL:0002194!3.95e-08!63;CL:0000576!3.95e-08!63;CL:0000040!3.95e-08!63;CL:0000559!3.95e-08!63;CL:0002009!4.60e-08!65 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.23e-08;39!CL:0000234;2.23e-08;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,3.42e-09,67;CL:0000839,3.63e-09,66;CL:0002194,1.19e-08,59;CL:0000576,1.19e-08,59;CL:0000040,1.19e-08,59;CL:0000559,1.19e-08,59;CL:0002009,2.75e-08,61;CL:0000473,3.07e-08,48;CL:0000234,3.07e-08,48;CL:0000766,4.24e-07,72 | |||
|ontology_enrichment_development_v019=UBERON:0006601;8.33e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!9.34e-27!115;UBERON:0001049!7.91e-21!57;UBERON:0005068!7.91e-21!57;UBERON:0006241!7.91e-21!57;UBERON:0007135!7.91e-21!57;UBERON:0001017!5.82e-20!82;UBERON:0005743!1.01e-19!86;UBERON:0000073!1.38e-19!94;UBERON:0001016!1.38e-19!94;UBERON:0002616!1.58e-19!59;UBERON:0000468!1.38e-18!659;UBERON:0003080!8.94e-17!42;UBERON:0002780!1.16e-16!41;UBERON:0001890!1.16e-16!41;UBERON:0006240!1.16e-16!41;UBERON:0000955!1.55e-16!69;UBERON:0006238!1.55e-16!69;UBERON:0001893!3.25e-15!34;UBERON:0002020!3.39e-15!34;UBERON:0003528!3.39e-15!34;UBERON:0002791!1.02e-14!33;UBERON:0000467!1.04e-14!625;UBERON:0000480!1.91e-14!626;UBERON:0002346!4.79e-14!90;UBERON:0001869!5.11e-14!32;UBERON:0000922!9.44e-14!612;UBERON:0002050!1.53e-13!605;UBERON:0005423!1.53e-13!605;UBERON:0000923!2.97e-13!604;UBERON:0005291!2.97e-13!604;UBERON:0006598!2.97e-13!604;UBERON:0002532!2.97e-13!604;UBERON:0003075!6.52e-13!86;UBERON:0007284!6.52e-13!86;UBERON:0000062!4.61e-11!511;UBERON:0002204!6.29e-11!167;UBERON:0002619!9.63e-11!22;UBERON:0000956!6.00e-10!25;UBERON:0000203!6.00e-10!25;UBERON:0000025!1.25e-09!194;UBERON:0001950!1.32e-09!20;UBERON:0003056!1.40e-09!61;UBERON:0000924!3.71e-08!173;UBERON:0006601!3.71e-08!173;UBERON:0000033!5.48e-08!123;UBERON:0000153!6.49e-08!129;UBERON:0007811!6.49e-08!129;UBERON:0004765!8.03e-08!101;UBERON:0001434!8.03e-08!101;UBERON:0000479!8.59e-08!787;UBERON:0002371!1.19e-07!80;UBERON:0001474!1.31e-07!86;UBERON:0004111!2.01e-07!241;UBERON:0004121!2.21e-07!169;UBERON:0000477!2.29e-07!286;UBERON:0002308!4.90e-07!9;UBERON:0000125!4.90e-07!9;UBERON:0002420!5.46e-07!9;UBERON:0007245!5.46e-07!9;UBERON:0010009!5.46e-07!9;UBERON:0010011!5.46e-07!9;UBERON:0000454!5.46e-07!9;UBERON:0002405!7.32e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;9.25e-14;34!UBERON:0002020;9.25e-14;34!UBERON:0001893;1.05e-13;34!UBERON:0002791;3.48e-13;32!UBERON:0001869;4.11e-13;32!UBERON:0002780;4.23e-13;41!UBERON:0001890;4.23e-13;41!UBERON:0000073;3.37e-12;53!UBERON:0002616;3.37e-12;53!UBERON:0002619;1.03e-11;22!UBERON:0001950;2.08e-10;20!UBERON:0000956;3.89e-10;25!UBERON:0000203;3.89e-10;25!UBERON:0007023;5.16e-09;114!UBERON:0001017;2.73e-08;75!UBERON:0000125;7.60e-08;9!UBERON:0002308;7.60e-08;9!UBERON:0002420;9.04e-08;9!UBERON:0007245;9.04e-08;9!UBERON:0010009;9.04e-08;9!UBERON:0010011;9.04e-08;9!UBERON:0000454;9.04e-08;9!UBERON:0001016;3.13e-07;83!UBERON:0000955;4.11e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.89e-29,114;UBERON:0001049,2.22e-21,56;UBERON:0005068,2.22e-21,56;UBERON:0006241,2.22e-21,56;UBERON:0007135,2.22e-21,56;UBERON:0000073,1.00e-19,53;UBERON:0002616,1.00e-19,53;UBERON:0001017,6.12e-19,81;UBERON:0001016,5.07e-18,89;UBERON:0002780,2.21e-17,41;UBERON:0001890,2.21e-17,41;UBERON:0003080,2.21e-17,41;UBERON:0006240,2.21e-17,41;UBERON:0002346,2.25e-16,86;UBERON:0001893,1.10e-15,34;UBERON:0003528,1.15e-15,34;UBERON:0002020,1.15e-15,34;UBERON:0000955,1.20e-15,68;UBERON:0006238,1.20e-15,68;UBERON:0003075,4.66e-15,82;UBERON:0007284,4.66e-15,82;UBERON:0002791,2.14e-14,32;UBERON:0001869,2.39e-14,32;UBERON:0000923,5.68e-14,560;UBERON:0010316,5.68e-14,560;UBERON:0005291,5.68e-14,560;UBERON:0006598,5.68e-14,560;UBERON:0010317,5.68e-14,560;UBERON:0002532,5.68e-14,560;UBERON:0002050,1.02e-13,564;UBERON:0010314,5.97e-13,132;UBERON:0005423,9.00e-12,581;UBERON:0002619,2.14e-11,22;UBERON:0000922,7.04e-11,592;UBERON:0000479,8.32e-11,773;UBERON:0003056,1.99e-10,61;UBERON:0002204,2.43e-10,167;UBERON:0001950,4.10e-10,20;UBERON:0000956,7.81e-10,25;UBERON:0000203,7.81e-10,25;UBERON:0010371,1.05e-09,104;UBERON:0001434,9.97e-09,100;UBERON:0004121,2.70e-08,171;UBERON:0000924,2.70e-08,171;UBERON:0006601,2.70e-08,171;UBERON:0002371,2.74e-08,76;UBERON:0004765,4.62e-08,90;UBERON:0001474,7.64e-08,82;UBERON:0000125,8.49e-08,9;UBERON:0002308,8.49e-08,9;UBERON:0002420,9.59e-08,9;UBERON:0007245,9.59e-08,9;UBERON:0010009,9.59e-08,9;UBERON:0010011,9.59e-08,9;UBERON:0000454,9.59e-08,9;UBERON:0000025,1.27e-07,192;UBERON:0002405,1.33e-07,93;UBERON:0000926,1.49e-07,315;UBERON:0004120,1.49e-07,315;UBERON:0006603,1.49e-07,315;UBERON:0011216,1.90e-07,223 | |||
|phase1_expression=2.36181893051724,3.8538094300377,4.65149533516705,2.00146596706261,1.78784437770915,0.872338524100369,0,1.26343974685366,0.522371256399677,0.245733936501509,0,0,0,3.09415882400117,1.98838425436749,2.6893005858071,0.602694528023977,0,1.46379839637152,0.861847406537515,0.408001382488506,0,2.28988789704845,0.684372125364421,0.376627918784408,0.534893840235659,1.23150884174919,0.393553906568396,0,0.767658796194425,0,0,0,0,0,0,0,1.66198622559563,0.401088894940283,0.434021741431704,56.8745304569408,47.936262570809,67.2272231525227,3.78035420826868,1.13362783106643,2.18325655069035,6.27558399645349,7.81218987241469,5.26500830521676,8.34307937734236,6.40401766322752,11.5876292645407,0.689491361473237,1.29096936716765,0,3.20011977222428,2.45615535052061,6.06753408001728,0.612167784741805,1.28371610830437,3.83602275479425,15.8328624089624,7.57961898962201,12.7867425159808,2.32167390902867,2.26954089876456,1.86846674698672,4.77372463987812,5.73631210262222,5.86409880703815,3.02699751316684,2.94622108790052,3.79754864929061,1.47878700418359,2.33864729961548,1.25795187305026,0.561643155732475,0.450530678524519,0.32145117339416,0.855038231223746,0.39783335439818,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411202997999018,0,0,0,0,1.00269411196656,0,0,0,0.128091319725675,0,0.822189523018381,0.552700035571697,0.289803085735052,0,0.267540828089713,0,0.226618685395132,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,2.68280343881454,2.04580098949649,1.80719576192283,1.50401373190767,2.31754430337318,2.3858578411533,0.486634870302636,0.567208902984407,1.55210578223795,0.614843499851882,11.5916481815476,0,0,7.14004266040303,7.83583817846703,6.78085598646212,0.238490624305342,0,0.74291500265913,2.78267370313387,0,4.51282652089873,1.13061588384802,0,0.275118041940067,0.835979866147242,0.775250277507987,1.42306505074684,1.67360306382335,0.402829317109147,0.760272105718513,1.46437234528902,4.04429388380456,0,0.982297011124877,1.57170560838319,1.0135033243499,0,2.84779697870439,2.01521918323448,0,0,0,1.49091585508596,2.02608818663328,4.63432132846266,5.16305917347865,2.12801029319014,3.36406560085384,0,3.7000132262574,4.66816553099649,2.2900814251847,2.28846664358842,5.2975099675726,0.576175924479999,0,1.24864030732128,0.570471821544449,3.88566569434683,0.587172493218824,1.29498355494505,1.12360645361799,1.22492502752936,1.35117749042945,1.65321249881225,1.18800285728205,1.23633464639278,0,0.718618141816238,1.0100166837244,0.875829639103749,1.6623846929051,1.31693286264251,2.75839016219118,0.45071417671979,1.58805056424029,1.07633781413317,2.34913127700424,1.48352330811693,0.900273288253207,2.06105058476878,0.515281080091258,0.930584281657949,0.506328996723799,0.487185025805993,2.01947019395292,1.93304787148829,3.07127507955743,1.77504796258307,1.5112814734146,0.508681776931463,0,0,0,0.121973706129595,0.265059536642971,0.69716365721711,0.621966330092223,0,0,3.12899064659632,1.28648187638577,1.38134921352481,0.928735856063958,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0.982827216677626,5.90789906681404,0,1.72183813960359,0.686271241194102,0,0,0,0,0,0,0,3.13012093432707,1.99594780200897,0.577465791044295,0,0.380508304469197,0,0,52.4442222966156,5.6161023633417,16.2007966894714,0,0,0,0,0,0,23.6478354190053,3.78608266256872,2.69526550203004,2.59415916150531,1.38866676769018,0.126995788584338,0,0,0,0,0,1.14330573052231,0.784917590417525,1.74384027533312,0.5867062865676,2.06834745212444,0,1.690605505112,1.06375246633948,1.04007436911366,0.257207374262142,0,0,2.00169191121407,1.08524321078289,0,1.30294473717494,0.710783897485092,0.791951872933429,2.41151501647669,6.97226766880235,1.69954085009497,30.4059451602976,38.1715389488416,31.6250909224547,0.479249710983165,1.14861935834114,1.42636905040718,3.18518874668674,1.2328579353023,1.43248770591916,0,0,0.215627574859517,0,6.35236560556159,6.50699269288109,4.63973287666617,2.34522771468088,2.55175500661265,0,0,0,2.69921281782108,4.00136416847742,3.25518028439683,0.415941723061614,2.3195768543631,1.10391690523754,1.52283839490527,3.61135319673263,0,1.03473071292505,0,0,3.12781012085098,1.17480694477644,0.343143423810856,0,0.431428401637234,0.106727557803444,0,1.66435439510497,1.5119514666484,2.72918588600655,3.52962538562544,3.08726103876381,4.22859192543813,6.14048698880044,2.57366273829772,0,1.69630663182921,1.9531789784444,3.85997633264903,3.11552657510173,2.32420756919918,1.32945394550784,0,0,3.09999010044438,0.910455840033585,1.31124414959424,0,0.308061348417659,0,0,0.527758144464379,0,0.680374821106063,1.29549549661284,0,0.270946437543853,0.501689773854853,0,0,0,0,0,1.53870075069834,0,0.976135183992909,3.50339439602256,0.915694648183434,1.07262349896764,0.574265537996172,0,0,1.83674364755032,1.54048617114644,1.22802939780904,1.37836572484531,10.3123435073543,2.61030049045611,1.53407929348982,1.78064071293475,0,0,0,0,3.253918845081,3.77774816196768,2.7881490806424,2.15623506123262,3.19383618190213,1.73986598415015,0.55597265731176,1.43124886741991,2.60510858551767,2.84741482246853,0.571890581771475,0,2.1396949401696,1.59101623962968,0.78494864019923,1.97859703341646,0.823611089208164,1.29593642580255,2.83055474202642,0,2.10629228119491,0,3.89941583410055,2.11300293513511,2.04749867111979,5.5148118461948,0,4.41092274836899,0.66343897524122,1.75380354101505,0.578775534266688,1.9676842561399,0.405820753925408,0.6196469961995,0.281695602532241,0.717056761020258,0.294747123039363,0.35667105148125,0.709522128141196,1.89996871767898,3.62224382255892,0,0,0,0,0,4.14232723417828,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0.640944426764839,0,0,0,1.44269212976445,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0.201799707191048,0,0.687010689511529,0,0,0,0,0,0,0,0,0,0,6.15334352941955,0,0,0,0,0,0,6.95903353436409,8.44016498463076,0.556543525114529,0,0,2.98871982376605,3.59169090190492,0,0.818149460017238,4.30796819113743,2.79935628895627,0.359473404589307,0,0.511572370226872,2.07151151837561,0,0,5.81599647657131,11.4104760739077,0,0,0,2.17499872630438,0,0.508507300585533,0,0,2.33283690706603,1.90987494426621,10.6288966297661,10.3712937217851,7.62908681585416,5.30780447669878,1.47773809476774,5.92340572315726,0,0,2.5393585306253,0.797594390929008,6.9169171316418,2.51321404347362,1.52106320690811,2.23300811812344,6.77822191173781,0.533034776018635,0,0,0,0,0,0,0,0,0.632994193584081,0,1.13082457147153,0.216388639742091,0.995261931078505,1.59223616106011,0,0.296521128680622,0.123563938946503,0.104421949505455,21.4335602878553,2.40773294189637,9.60484227473891,0,0.391329237864179,0,2.76209081994573,2.41981432097328,0.91821828489147,14.7224730534377,0,0.622129148383483,0,0,0,0,0,0,0.173559738335131,0,0,5.59125338374496,0.171986032471617,0,0,0,2.71569246167574,0,6.10148000107438,0,0.596143835108969,9.05344382169065,0,0.240476460754601,2.13452994739353,0,0,0,0,0.14405479798815,0.372757606696298,0,0.135904206073614,0.104602846312333,4.18192692308919,0,9.00630433064684,11.2262410691434,0,0,4.20619766846903,6.42349522926185,2.52076466412852,2.15361907373044,1.39775300349294,3.004582336956,1.33902874465124,1.61240333968143,1.80149941771202,0,0.157566364614447,0.0824158583811665,0.26961417541674,5.01980155725219,0,7.15706720828373,10.6238656767029,0.321506296930038,0.550157746388935,1.24632101408756,1.349843349309,0.77380195455795,7.16844768564691,0.335434687599266,5.75281663284147,5.4552771660398,0.422401346077626,0,0,7.14695326373367,0.662091970365432,0,1.08599920350743,1.72844298240254,1.30634944043764,0,0,1.70388021785422,1.69968137280189,2.34483573884932,3.97520666736664,7.49841146896993,8.72735171501754,1.36869470307464,0,4.80543356554626,5.50215067848831,2.07119527673598,6.94632430536731,0,0,0,3.80812462358632,5.7658675625221,3.06345576763462,2.95085367638824,2.51286554000375,6.2024772597689,6.71144456960797,9.51451073369399,9.17454713104114,6.65574309221114,11.177352529449,0.553394539744923,0.124980407962107,0.151649117541648,0.285465333544967,0,7.96169339871699,0.144921028610825,3.58211526928498,1.8697064787778,1.66441758450784,1.32582103692562,1.76097531226803,4.44905610798268,0.457680136793847,0.302461847526478,2.48699520932449,1.33069634990671,2.54874827461924,0.449803112163605,0.465788870628778,5.80588690977198,1.59505028734797,4.17396049449387,0.901545653983311,1.90402606084398,2.84809513243263,1.63663793282303,1.18151612746737,1.39210127963548,1.99047944349308,0.400027764663154,3.77735275701072,2.69399591012735,0,0,0,0,0.453411851024545,1.389134845943,0,0.358177682162975,1.23520578864389,1.09642024789354,0,0,0,0,0,0,6.91292180758654,7.79441235357554,3.72021552877417,1.96278473107013,0,0,0.633936370075881,0.39997479170986,0,7.23302914575426,0,4.23443685579234,0.139879507719444,0,0,0.539124056983409,8.33509491836251,0.655257829152084,2.0367903594483,12.754495206101,9.29518231942516,1.67593475391973,1.59002175326709,0.788617450012533,0,2.82140754952547,4.8999276376512,10.4051344656264,4.25089728976755,6.8642559394575,3.48697819209284,1.00828678488687,5.53258019713743,6.78197711653775,11.4215536207324,0,0.353909170043221,0,0,0.381382095467167,0.690359926060101,4.17724066444177,3.00841313397029,0,1.56302802246618,0.785720083444267,0.327543835020193,0,6.75375846183946,6.24862478891078,8.06078506354618,7.92697627423835,2.18789923607288,1.09651553371436,7.44316767583941,1.40696995487696,1.27762427639595,1.07140367175657,1.00885116665647,1.21393120847326,3.87025725297206,4.08030902748139,1.72850981333669,2.57232014156128,7.47667062745149,7.03768677122485,0,0.222462803784138,2.8257513426185,10.3696289344561,1.12108865325516,4.56579360254748,0.431855182437243,0,14.0808792028013,0,0,0.173858272302579,0.801711364730253,0.414432328326074,0.17071847709395,0,2.15113679410139,0.828324005113957,1.19298766662821,1.27016115057279,0.4582137370881,0,0,0,0.098150233615243,0,0.647428837187895,1.33461648913121,4.6392577253528,7.77137588894623,0,8.35593255677747,0.118920090777569,0.79062257427272,0.329821550236287,3.92503393273351,1.85217979459067,6.99390593612663,0.470317296361523,3.43207650455468,0.235676547101626,9.61911488863232,8.02025280883132,3.3812458206672,0.339854229375634,12.0299415014213,11.8602513871382,4.89711664032152,0,0,0.0802413666891683,0.730336388246517,0.917458566809082,7.31031874072402,2.52434499509095,7.07111497985513,2.18175345170189,1.5870805215462,1.11598505450025,1.84870251452567,3.02838593486652,3.15416062087697,0.546327859818478,0.633492505057185,0.203977659483963,0,0,0,7.1231976325145,8.57485216499771,9.95003327350535,10.7570315696371,4.05144565611864,3.33290204049236,0.710478008196067,2.29676442894674,1.90624166387043,1.20929600728513,1.0105859447911,2.39488422686657,1.71116650542641,2.35732185551056,4.37505452895326,3.99192427855216,0.162806537221949,0,1.9307228228694,0.0898252021065869,4.69281884806909,3.78948476966886,3.66206560484165,0.665756774185513,6.64203518850387,1.9234109538194 | |||
|short_description=p3@RGL1 | |||
}} |
Revision as of 22:44, 10 January 2014
Short description: | p3@RGL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RGL1_5end |
Coexpression cluster: | C67_CD14_Monocytederived_Macrophage_dura_Dendritic_spleen_lung |
Association with transcript: | 66bp_to_ENST00000539189_5end |
EntrezGene: | RGL1 |
HGNC: | 30281 |
UniProt: | F5H6U6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 3.42e-09 | 67 |
myeloid lineage restricted progenitor cell | 3.63e-09 | 66 |
monopoietic cell | 1.19e-08 | 59 |
monocyte | 1.19e-08 | 59 |
monoblast | 1.19e-08 | 59 |
promonocyte | 1.19e-08 | 59 |
macrophage dendritic cell progenitor | 2.75e-08 | 61 |
defensive cell | 3.07e-08 | 48 |
phagocyte | 3.07e-08 | 48 |
myeloid leukocyte | 4.24e-07 | 72 |