FFCP PHASE1:Hg19::chr1:169555709..169555730,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2153 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3542 | |||
|TSSclassifier=strong | |||
|UniProt=B4DU26 | |||
|association_with_transcript=0bp_to_ENST00000546081_5end | |||
|coexpression_cluster_id=C3902 | |||
|description=CAGE_peak_1_at_F5_5end | |||
|id=chr1:169555709..169555730,- | |||
|ontology_enrichment_celltype=CL:0002057!1.85e-25!42;CL:0000860!1.72e-22!45;CL:0000766!1.72e-20!76;CL:0000738!2.36e-20!140;CL:0002087!1.17e-16!119;CL:0002031!4.07e-16!124;CL:0000839!2.35e-15!70;CL:0000037!2.06e-14!172;CL:0000566!2.06e-14!172;CL:0002194!2.51e-14!63;CL:0000576!2.51e-14!63;CL:0000040!2.51e-14!63;CL:0000559!2.51e-14!63;CL:0000557!2.72e-14!71;CL:0000988!9.98e-14!182;CL:0002009!2.33e-13!65;CL:0002032!4.70e-13!165;CL:0000837!4.70e-13!165;CL:0000763!2.05e-10!112;CL:0000049!2.05e-10!112;CL:0000094!4.98e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.52e-29;33!CL:0002057;1.52e-29;33!CL:0000473;1.79e-19;39!CL:0000234;1.79e-19;39!CL:0000576;4.72e-16;48!CL:0000766;7.06e-12;69!CL:0000094;1.04e-08;8!CL:0002087;1.15e-07;104!CL:0000081;2.52e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.19e-30,42;CL:0002057,1.19e-30,42;CL:0000473,6.46e-25,48;CL:0000234,6.46e-25,48;CL:0000766,1.10e-23,72;CL:0000738,1.84e-20,136;CL:0002087,2.59e-17,115;CL:0002194,4.63e-17,59;CL:0000576,4.63e-17,59;CL:0000040,4.63e-17,59;CL:0000559,4.63e-17,59;CL:0000839,1.04e-16,66;CL:0000557,2.98e-16,67;CL:0002009,4.54e-16,61;CL:0002031,1.38e-15,120;CL:0000988,2.14e-12,177;CL:0000037,2.48e-12,168;CL:0002032,7.12e-12,161;CL:0000837,7.12e-12,161;CL:0000763,2.11e-10,108;CL:0000049,2.11e-10,108;CL:0000094,1.14e-08,8;CL:0000081,2.68e-07,11 | |||
|ontology_enrichment_development_v019=CL:0002057;7.29e-23;42!UBERON:0004161;7.94e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.77e-38!115;UBERON:0002390!1.23e-19!102;UBERON:0003061!1.23e-19!102;UBERON:0002193!3.85e-17!112;UBERON:0002405!1.81e-14!115;UBERON:0002371!3.53e-11!80;UBERON:0001049!4.67e-11!57;UBERON:0005068!4.67e-11!57;UBERON:0006241!4.67e-11!57;UBERON:0007135!4.67e-11!57;UBERON:0000178!1.08e-09!15;UBERON:0000179!1.08e-09!15;UBERON:0000463!1.08e-09!15;UBERON:0001474!3.13e-09!86;UBERON:0002616!3.87e-08!59;UBERON:0003080!1.04e-07!42;UBERON:0002780!2.12e-07!41;UBERON:0001890!2.12e-07!41;UBERON:0006240!2.12e-07!41;UBERON:0003075!8.12e-07!86;UBERON:0007284!8.12e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.20e-12;15!UBERON:0000179;4.20e-12;15!UBERON:0000463;4.20e-12;15!UBERON:0007023;2.94e-08;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.16e-28,114;UBERON:0002390,3.56e-22,98;UBERON:0003061,3.56e-22,98;UBERON:0002193,4.61e-20,108;UBERON:0002371,1.00e-12,76;UBERON:0002405,3.98e-12,93;UBERON:0000178,3.99e-12,15;UBERON:0000179,3.99e-12,15;UBERON:0000463,3.99e-12,15;UBERON:0001474,7.43e-11,82;UBERON:0004765,8.21e-09,90;UBERON:0001434,3.08e-07,100 | |||
|phase1_expression=0,2.14100523890983,0.563817616383885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.81404456212093,5.00813595644669,4.09296062831132,5.11373559903575,19.1914699048606,7.1215416725395,0,0,0,0.0774672005803016,0,0.293600439334847,23.8218025668707,19.853900299544,13.237663113667,0.223915474239924,0.32389366601898,0.515151135268373,28.3526565620151,13.6035339727971,16.4957161607715,36.4913587941925,19.3248907370258,15.1756121738601,47.1815523408327,42.7788379903598,41.1479080006138,36.1982964773449,19.3645405075148,17.6054432572644,27.2951392336777,10.0975275521403,10.3372802844739,32.4448925913157,10.9115869205872,12.7867425159808,49.4776950280074,24.7334935450824,34.0979800426155,33.6642716809157,18.1563271901165,16.1933784738849,52.2597223734026,35.4608384525737,42.5690135622029,37.5347691632689,12.5214396235772,17.0889689218078,0.422510572623884,1.06302149982522,1.04829322754188,17.9725809834392,14.1166279271016,36.3239825935401,0,0.59675003159727,0,0,0,0,0.853460445133014,0,0,0.661044872784862,0,0,0.587237189370939,0.382273228125229,0,1.68152568894461,0,5.31116379307349,6.28817220398664,15.4201124249632,23.5732958500856,3.58514493296949,11.8361951433683,0,25.0673527991641,23.568472597987,44.9713806004751,57.6812229819483,63.1490206247579,51.243382938592,2.95988228286617,0.276350017785848,0.289803085735052,1.77943875794473,8.29376567078111,4.18142095219907,3.73920830901968,7.2811893784365,22.6794114018536,10.1207876807801,1.27426165729639,0.651083453856419,0,6.77588035849977,5.63141089079441,1.24930726552346,2.8413270245282,0.821127996921047,1.00803371612366,1.06976078313403,0.289648807765598,0,0,0,0,0,0.434539556882471,0,0,0,0,0,1.57174890597255,0,0,0,0,0.26591592103773,0.238490624305342,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8602375692457,27.1446184903828,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269662616320329,0,0,0,0,0.4115740113314,0,224.356411634641,159.218009101775,181.963291257872,0,8.73217913656106,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,9.36060152002293,0.176096868026452,3.10992173311158,0.144119953416961,2.90357596880674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0.799783929456456,0,0.502257091432126,0,0,0,0,0,0,0,0,2.75843064282698,3.01878604803324,1.79680250791648,0,0,0,0,0,46.4384354847253,35.899375104483,87.8560888484395,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.68425709716127,9.70713903683776,7.15074637283077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0877350463246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,150.130753970731,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0.192190067365106,0.127612712494584,0.10115778085555,0,0,0,0.616067160352178,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0.202182481573316,1.58510321173008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,143.381008583035,0,0,0,0,9.64150457541122,7.64637207142375,5.69647187174163,7.86164859010704,5.34770955012053,4.53931317834902,7.02040868409549,9.51750211553125,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0.842391534340376,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0.19538809540204,0.556812347790485,0,0.270455678475983,0,0,0,3.51619630252546,0,0,0,0,0.890894042497916,0,1.9882952955326,0.703347082052564,0,13.678721560821,0,4.98119970627674,2.48655523978033,10.8331081577339,0,0.246169610922139,0,0,0.179021174675609,0,1.1837208676432,14.3689855408164,0,7.75466196876175,1.48428957058962,0,0,0,2.17499872630438,0,7.11910220819746,0,0,0,0,0.885741385813839,0.723578631752448,1.52581736317083,3.31737779793674,2.65992857058193,13.8212800207003,0,0,0.0769502585037971,0.113942055847001,1.1528195219403,0.359030577639089,0,0.31900115973192,0.366390373607449,0,0,0,0.332423363800313,0,0,0,0,0,0,0.163232808159148,0.282706142867882,0,1.99052386215701,1.76915129006678,3.05515072466813,15.715619820073,5.31324937469962,6.05647307131641,16.8502832451693,3.21031058919516,2.81117334870407,0,0.19566461893209,0,0,3.62972148145992,0.30607276163049,0.695052375913368,0,0,0,0,0,0,0,0,0,0,0,7.68797340264933,0,0,0,0,0.581934098930517,0,5.87549926029384,0,0,1.01297273529406,0.195551382734803,0.0801588202515337,42.4771459531312,0.599428828746391,21.3253817388077,0,3.77508995296322,0,0,0,0,0,0,0,0,2.46429682005587,0,0,2.89176089707246,17.3155088788798,3.66656678418694,19.382571663574,9.18523402295359,32.1919536102428,40.6172052544208,1.74677028465488,0,44.2684608204325,43.9610157274308,41.0430974738209,46.6432523470959,138.684321454281,0,0,9.67044183392187,0.160753148465019,0,0,0,0,0.364497339948148,0,3.70386824306231,3.46200281690987,0,0,0,18.5820784857075,56.2778174810617,1.5256112259285,0,0,0,0,0.164185041498678,0,0,208.397276290233,159.008266694666,2.71494208359256,3.17358244182456,36.7836701451308,0,3.09683496446315,0.471612915298998,2.48543433208317,5.45782623993146,0,0,0,1.088035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| |||
|short_description=p1@F5 | |||
}} |
Revision as of 22:11, 10 January 2014
Short description: | p1@F5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_F5_5end |
Coexpression cluster: | C3902_Hepatocyte_liver_hepatoma_Neutrophils_medulla_placenta_CD4 |
Association with transcript: | 0bp_to_ENST00000546081_5end |
EntrezGene: | F5 |
HGNC: | 3542 |
UniProt: | B4DU26 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.19e-30 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.19e-30 | 42 |
defensive cell | 6.46e-25 | 48 |
phagocyte | 6.46e-25 | 48 |
myeloid leukocyte | 1.10e-23 | 72 |
leukocyte | 1.84e-20 | 136 |
nongranular leukocyte | 2.59e-17 | 115 |
monopoietic cell | 4.63e-17 | 59 |
monocyte | 4.63e-17 | 59 |
monoblast | 4.63e-17 | 59 |
promonocyte | 4.63e-17 | 59 |
myeloid lineage restricted progenitor cell | 1.04e-16 | 66 |
granulocyte monocyte progenitor cell | 2.98e-16 | 67 |
macrophage dendritic cell progenitor | 4.54e-16 | 61 |
hematopoietic lineage restricted progenitor cell | 1.38e-15 | 120 |
hematopoietic cell | 2.14e-12 | 177 |
hematopoietic stem cell | 2.48e-12 | 168 |
hematopoietic oligopotent progenitor cell | 7.12e-12 | 161 |
hematopoietic multipotent progenitor cell | 7.12e-12 | 161 |
myeloid cell | 2.11e-10 | 108 |
common myeloid progenitor | 2.11e-10 | 108 |
granulocyte | 1.14e-08 | 8 |
blood cell | 2.68e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.16e-28 | 114 |
hematopoietic system | 3.56e-22 | 98 |
blood island | 3.56e-22 | 98 |
hemolymphoid system | 4.61e-20 | 108 |
bone marrow | 1.00e-12 | 76 |
immune system | 3.98e-12 | 93 |
blood | 3.99e-12 | 15 |
haemolymphatic fluid | 3.99e-12 | 15 |
organism substance | 3.99e-12 | 15 |
bone element | 7.43e-11 | 82 |
skeletal element | 8.21e-09 | 90 |
skeletal system | 3.08e-07 | 100 |