FFCP PHASE1:Hg19::chr1:161087873..161087925,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4817 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7828 | |||
|TSSclassifier=strong | |||
|UniProt=B1AQP4,Q86X76,B7Z410 | |||
|association_with_transcript=0bp_to_ENST00000368007,ENST00000368008,ENST00000368009,ENST00000392190,ENST00000473918,ENST00000477684,ENST00000479266,ENST00000486962,ENST00000492411,ENST00000496768,NM_001185093,NM_001185094,uc001fxv.1,uc001fxw.2,uc001fxx.1_5end | |||
|description=CAGE_peak_1_at_NIT1_5end | |||
|id=chr1:161087873..161087925,+ | |||
|ontology_enrichment_celltype=CL:1000497!5.27e-08!18;CL:0002518!5.27e-08!18;CL:1000449!1.70e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:1000497;5.45e-08;17!CL:0002518;5.45e-08;17!CL:1000449;1.55e-07;15!CL:1000507;8.51e-07;10!CL:1000494;8.51e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,4.57e-08,17;CL:0002518,4.57e-08,17;CL:1000449,1.44e-07,15;CL:1000507,8.71e-07,10;CL:1000494,8.71e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!9.99e-10!347;UBERON:0000468!5.82e-09!659;UBERON:0000922!8.55e-09!612;UBERON:0002050!3.87e-08!605;UBERON:0005423!3.87e-08!605;UBERON:0000923!4.50e-08!604;UBERON:0005291!4.50e-08!604;UBERON:0006598!4.50e-08!604;UBERON:0002532!4.50e-08!604;UBERON:0000062!5.55e-08!511;UBERON:0000080!1.23e-07!18;UBERON:0002120!1.23e-07!18;UBERON:0004875!1.23e-07!18;UBERON:0005721!1.23e-07!18;UBERON:0005754!1.23e-07!18;UBERON:0007297!1.23e-07!18;UBERON:0004211!1.70e-07!16;UBERON:0001285!1.70e-07!16;UBERON:0007684!1.70e-07!16;UBERON:0003220!1.70e-07!16;UBERON:0004208!1.70e-07!16;UBERON:0006555!2.24e-07!17;UBERON:0005103!2.24e-07!17;UBERON:0000083!2.24e-07!17;UBERON:0009201!2.24e-07!17;UBERON:0004819!2.24e-07!17;UBERON:0006553!2.24e-07!17;UBERON:0003074!2.24e-07!17;UBERON:0003060!2.24e-07!17;UBERON:0000480!6.39e-07!626;UBERON:0000064!6.68e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.55e-07;15!UBERON:0004819;1.55e-07;15!UBERON:0001285;1.55e-07;15!UBERON:0007684;1.55e-07;15!UBERON:0004211;8.51e-07;10!UBERON:0009773;8.51e-07;10!UBERON:0001231;8.51e-07;10!UBERON:0004810;8.51e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005423,1.06e-08,581;UBERON:0000922,1.21e-08,592;UBERON:0004211,1.44e-07,15;UBERON:0009773,1.44e-07,15;UBERON:0001231,1.44e-07,15;UBERON:0001285,1.44e-07,15;UBERON:0007684,1.44e-07,15;UBERON:0004208,1.44e-07,15;UBERON:0006555,1.98e-07,16;UBERON:0004819,1.98e-07,16;UBERON:0006554,5.04e-07,47;UBERON:0004810,8.71e-07,10 | |||
|phase1_expression=24.5265812015251,32.9714806792114,24.667020716795,34.0249214400643,34.4160042709012,40.127572108617,32.9289841618804,20.2150359496586,40.2225867427751,34.6484850467128,92.1097541723604,41.0669779604724,41.1476486036388,41.2141955356955,48.3840168562757,27.5653310045228,32.5455045132948,29.2124036154949,25.3725055371064,48.3865758241776,42.6361444700489,41.6894779565857,30.6272506230231,21.8999080116615,27.6193807108566,13.7544130346312,11.5761831124424,11.4130632904835,12.194292582316,7.67658796194425,12.6949221119182,42.2933763260306,36.7471220909465,56.9421175656853,21.6908161624845,15.6386155736164,15.8544237240817,8.86392653651004,8.42286679374595,8.68043482863407,30.4525044966297,27.2070679455943,32.1969459542733,22.391328772053,20.4053009591957,18.436388650274,23.9401908012855,19.3248907370258,23.2279778171328,34.8107794709802,21.5174993484445,26.0130452877444,10.3423704220986,17.4280864567633,10.8341189275473,22.9655654241978,18.8305243539914,24.7195832889593,18.3650335422542,15.4045932996525,13.4260796417799,28.0373605158709,24.1351025722175,28.5570582856905,18.863600510858,14.7520158419696,17.4390229718761,28.6423478392687,26.0741459210101,29.5376828798959,21.7943820948013,16.940771255428,14.2408074348398,33.1670799509749,31.6780406947915,23.4817682969381,30.4410590407002,31.8375012823993,16.072558669708,37.9066949175861,34.4125851554426,28.6782721410475,22.879511779972,20.2071286166989,24.016749854316,27.3107342442565,24.4241552091968,29.8871268776331,25.1197051658248,15.2648600725658,7.96898156753228,6.45960908308033,9.93910393125595,9.25199300053181,7.8471198817415,19.7538063581308,8.65522988500866,8.64623678048162,8.22405995998037,17.8889550068026,19.5553359980154,18.4644644236546,11.6896037044747,28.0754351350637,20.6224135232386,22.1533894583621,16.519035689666,27.5396337410202,25.2315134266164,22.6924308353073,25.9769016718697,23.7638530302743,19.722112900554,20.3331029348182,19.8617495229456,20.1690630001668,15.3288197440768,20.2740192834752,17.2053390573262,20.0696211024181,27.3455050619696,32.3153695112447,21.3816669090437,24.8294025639572,42.4764470277976,22.4938389441816,22.9915839137893,7.66105624253983,5.61624411145365,6.66192257860875,43.8852359365131,36.2178464239963,21.7366355134002,27.469375581227,16.5441510509844,28.8244572732039,6.36228757640879,30.6579968290661,25.5244006342983,23.9467749259569,23.5397225657578,27.9640326187616,63.0230848746098,51.5390375470357,26.612886279684,32.2140014003644,30.7132888798578,13.8324562097098,8.57992366170192,5.94332002127304,11.5282196272689,18.9251610923347,18.3984465852025,15.2633144319483,17.1994768846061,20.0836170616249,14.8386426241136,14.4713385134824,15.2979492955285,13.0541038978221,24.1697590265488,19.0068026429628,20.9893369491426,14.7065232138347,21.8738325928075,16.1632508194184,12.3491154944393,9.00891843866578,15.3316637465883,17.0867818722263,14.2897360265718,9.22462922052443,7.75560528296651,44.045499266396,19.8788780678127,18.6146852146932,30.9837483102932,27.5363155918861,18.4427558743146,17.3810056044115,19.2148192313469,21.9534118091272,18.3614510885862,19.5330474501048,21.4135093078631,35.5689954965589,13.82822218752,59.5176436857843,16.8566441488373,20.5369855756002,14.0481759718693,23.486899728753,25.0903063770604,22.1912274589553,23.0694213518029,29.6030704721361,27.4846577927536,24.9480600029231,23.7376252107415,43.6877453730253,66.1128690470939,25.9237615489262,20.7696742987461,16.3467828135668,20.6319481813994,24.5190236639216,16.8266625975388,20.3043607856438,27.0878349890182,24.1319849364981,18.861939203201,34.5104760497063,21.12576849388,43.0259701876201,25.1257756047646,18.7341728787806,26.2105543883624,33.3212582002231,22.8283748632902,30.8743968523931,30.8858345489454,21.8632053153979,24.7558464773312,34.2071710099035,32.7295344709002,22.6575630357313,24.5167149320487,22.5300606146525,26.3760250313807,31.5129607246726,32.0447480612048,39.7825321392655,35.9833924358577,37.3079744151873,34.5337303381201,28.7908115379827,28.1532997851138,38.4497100129493,39.6174021683539,37.3567096319397,37.2793627835492,37.6931438279863,42.2341702017752,39.2359106746078,44.9347155137042,37.7052213807463,26.5735963664873,44.8773676171027,33.7490689291748,38.2222649602409,48.1669132322957,30.4676437170064,32.4934448674772,25.1633966666351,35.0517049847874,22.9900865800024,37.8638484659758,60.6969467591146,26.8412356339054,25.6469993089127,31.6034056151015,46.797065337581,25.9796415645492,32.2286525830714,16.5546258872509,12.4155145074523,19.9083770407943,18.2643986145214,12.6432703673484,25.7545848628462,34.4703808522356,37.6746866874173,32.4015933789428,28.1201501960331,31.076693716789,30.1980957126283,32.7784193092425,32.5510011135637,32.2041450498777,32.0231104632363,21.9240600692933,18.2448741675879,23.9239122672156,19.6938196145153,26.0341366597893,26.3572013635212,41.0261065235164,18.8179690624976,19.3315686282248,25.529159916733,24.8668996388603,22.7626101221082,23.9778037858304,15.4743783082205,17.71022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| |||
|short_description=p1@NIT1 | |||
}} |
Revision as of 21:51, 10 January 2014
Short description: | p1@NIT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NIT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000368007, ENST00000368008, ENST00000368009, ENST00000392190, ENST00000473918, ENST00000477684, ENST00000479266, ENST00000486962, ENST00000492411, ENST00000496768, NM_001185093, NM_001185094, uc001fxv.1, uc001fxw.2, uc001fxx.1_5end |
EntrezGene: | NIT1 |
HGNC: | 7828 |
UniProt: | B1AQP4Q86X76B7Z410 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 4.57e-08 | 17 |
kidney epithelial cell | 4.57e-08 | 17 |
epithelial cell of nephron | 1.44e-07 | 15 |
kidney tubule cell | 8.71e-07 | 10 |
nephron tubule epithelial cell | 8.71e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
developing anatomical structure | 1.06e-08 | 581 |
embryo | 1.21e-08 | 592 |
nephron epithelium | 1.44e-07 | 15 |
renal tubule | 1.44e-07 | 15 |
nephron tubule | 1.44e-07 | 15 |
nephron | 1.44e-07 | 15 |
uriniferous tubule | 1.44e-07 | 15 |
nephrogenic mesenchyme | 1.44e-07 | 15 |
excretory tube | 1.98e-07 | 16 |
kidney epithelium | 1.98e-07 | 16 |
urinary system structure | 5.04e-07 | 47 |
nephron tubule epithelium | 8.71e-07 | 10 |