FFCP PHASE1:Hg19::chr1:98552894..98552910,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C139 | |||
|description=CAGE_peak_at_chr1:98552894..98552910,+ | |||
|id=chr1:98552894..98552910,+ | |||
|ontology_enrichment_celltype=CL:0000128!1.67e-30!7;CL:0000126!1.67e-30!7;CL:0000127!1.67e-30!7;CL:0002453!1.67e-30!7;CL:0002605!2.68e-26!3;CL:0000064!2.04e-25!3;CL:0005012!2.04e-25!3;CL:0000067!2.04e-25!3;CL:0002304!2.04e-25!3;CL:0000243!1.68e-12!15;CL:0000125!1.68e-12!15;CL:0000030!1.68e-12!15;CL:0000339!1.68e-12!15;CL:0000095!3.62e-11!17;CL:0000123!3.62e-11!17;CL:0002319!7.27e-11!25;CL:0000133!7.58e-10!59;CL:0000221!5.18e-08!71 | |||
|ontology_enrichment_celltype_v019=CL:0002605;3.19e-38;3!CL:0000128;7.12e-37;7!CL:0000126;7.12e-37;7!CL:0000127;7.12e-37;7!CL:0000243;1.07e-15;15!CL:0000125;1.07e-15;15!CL:0000095;3.96e-14;17!CL:0000064;9.43e-11;3!CL:0000067;9.43e-11;3!CL:0005012;9.43e-11;3!CL:0002304;9.43e-11;3!CL:0002319;3.69e-10;25!CL:0000306;1.82e-08;4!CL:0002222;1.82e-08;4!CL:0002224;1.82e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,3.86e-38,3;CL:0000128,8.05e-37,7;CL:0000126,8.05e-37,7;CL:0000127,8.05e-37,7;CL:0002453,8.05e-37,7;CL:0000243,1.12e-15,15;CL:0000125,1.12e-15,15;CL:0000030,1.12e-15,15;CL:0000339,1.12e-15,15;CL:0000095,4.14e-14,17;CL:0000123,4.14e-14,17;CL:0000064,8.99e-11,3;CL:0000067,8.99e-11,3;CL:0005012,8.99e-11,3;CL:0002304,8.99e-11,3;CL:0002319,3.81e-10,25;CL:0000306,1.82e-08,4;CL:0002222,1.82e-08,4;CL:0002224,1.82e-08,4;CL:0000133,6.64e-08,59 | |||
|ontology_enrichment_development_v019=CL:0000339;1.07e-15;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001778!2.04e-25!3;UBERON:0001775!2.04e-25!3;UBERON:0000488!3.13e-19!4;UBERON:0002203!5.08e-13!6;UBERON:0001768!5.08e-13!6;UBERON:0007625!1.93e-12!11;UBERON:0002200!3.30e-12!11;UBERON:0006876!3.30e-12!11;UBERON:0001801!8.23e-10!14;UBERON:0003075!3.58e-08!86;UBERON:0007284!3.58e-08!86;UBERON:0002346!9.61e-08!90;UBERON:0003056!1.07e-07!61;UBERON:0000019!2.91e-07!19;UBERON:0000047!2.91e-07!19;UBERON:0004088!2.91e-07!19;UBERON:0003072!2.91e-07!19;UBERON:0003071!2.91e-07!19;UBERON:0004128!2.91e-07!19;UBERON:0000970!6.62e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;2.48e-11;11!UBERON:0002369;8.17e-11;3!UBERON:0001235;8.17e-11;3!UBERON:0006858;8.17e-11;3!UBERON:0001778;9.43e-11;3!UBERON:0001775;9.43e-11;3!UBERON:0000956;1.91e-10;25!UBERON:0000203;1.91e-10;25!UBERON:0001801;4.12e-09;14!UBERON:0002791;1.07e-08;32!UBERON:0001869;1.07e-08;32!UBERON:0010077;1.82e-08;4!UBERON:0005389;1.82e-08;4!UBERON:0000484;1.82e-08;4!UBERON:0000965;1.82e-08;4!UBERON:0001803;1.82e-08;4!UBERON:0000488;2.18e-08;4!UBERON:0003528;3.01e-08;34!UBERON:0002020;3.01e-08;34!UBERON:0001893;8.42e-08;34!UBERON:0000019;5.92e-07;19!UBERON:0000047;5.92e-07;19!UBERON:0004088;5.92e-07;19!UBERON:0010230;5.92e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,1.02e-11,61;UBERON:0007625,2.42e-11,11;UBERON:0002369,8.17e-11,3;UBERON:0001235,8.17e-11,3;UBERON:0006858,8.17e-11,3;UBERON:0001778,8.99e-11,3;UBERON:0001775,8.99e-11,3;UBERON:0000956,1.94e-10,25;UBERON:0000203,1.94e-10,25;UBERON:0001801,4.04e-09,14;UBERON:0003075,7.91e-09,82;UBERON:0007284,7.91e-09,82;UBERON:0010077,1.82e-08,4;UBERON:0005389,1.82e-08,4;UBERON:0000484,1.82e-08,4;UBERON:0002546,1.82e-08,4;UBERON:0000965,1.82e-08,4;UBERON:0001803,1.82e-08,4;UBERON:0003073,1.82e-08,4;UBERON:0005426,1.82e-08,4;UBERON:0002346,1.96e-08,86;UBERON:0000488,2.11e-08,4;UBERON:0002791,2.28e-08,32;UBERON:0001869,2.28e-08,32;UBERON:0003528,6.31e-08,34;UBERON:0002020,6.31e-08,34;UBERON:0001893,6.31e-08,34;UBERON:0010314,7.30e-08,132;UBERON:0010371,4.99e-07,104;UBERON:0000955,6.33e-07,68;UBERON:0006238,6.33e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369363174230364,0,0,2.0036519099174,0.821246550437305,1.12988375635323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294605907474837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07976597760949,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.53547632337999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.55346817447373,0,0,0,0,0,0,0,0,0,0,0,0,0,27.9193503230883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485560759068186,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0.277349346026277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229073192331831,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0.252332849670158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320182037633146,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:98552894..98552910,+ | |||
}} |
Revision as of 19:44, 10 January 2014
Short description: | p@chr1:98552894..98552910, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:98552894..98552910, + |
Coexpression cluster: | C139_astrocytoma_skin_salivary_gall_serous_Mallassezderived_renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 3.86e-38 | 3 |
oligodendrocyte | 8.05e-37 | 7 |
macroglial cell | 8.05e-37 | 7 |
astrocyte | 8.05e-37 | 7 |
oligodendrocyte precursor cell | 8.05e-37 | 7 |
glial cell (sensu Vertebrata) | 1.12e-15 | 15 |
glial cell | 1.12e-15 | 15 |
glioblast | 1.12e-15 | 15 |
glioblast (sensu Vertebrata) | 1.12e-15 | 15 |
neuron associated cell | 4.14e-14 | 17 |
neuron associated cell (sensu Vertebrata) | 4.14e-14 | 17 |
ciliated cell | 8.99e-11 | 3 |
ciliated epithelial cell | 8.99e-11 | 3 |
multi-ciliated epithelial cell | 8.99e-11 | 3 |
non-pigmented ciliary epithelial cell | 8.99e-11 | 3 |
neural cell | 3.81e-10 | 25 |
crystallin accumulating cell | 1.82e-08 | 4 |
vertebrate lens cell | 1.82e-08 | 4 |
lens epithelial cell | 1.82e-08 | 4 |
neurectodermal cell | 6.64e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 1.02e-11 | 61 |
pigment epithelium of eye | 2.42e-11 | 11 |
adrenal gland | 8.17e-11 | 3 |
adrenal cortex | 8.17e-11 | 3 |
adrenal/interrenal gland | 8.17e-11 | 3 |
ciliary epithelium | 8.99e-11 | 3 |
ciliary body | 8.99e-11 | 3 |
cerebral cortex | 1.94e-10 | 25 |
pallium | 1.94e-10 | 25 |
anterior segment of eyeball | 4.04e-09 | 14 |
neural plate | 7.91e-09 | 82 |
presumptive neural plate | 7.91e-09 | 82 |
cuboidal epithelium | 1.82e-08 | 4 |
transparent eye structure | 1.82e-08 | 4 |
simple cuboidal epithelium | 1.82e-08 | 4 |
cranial placode | 1.82e-08 | 4 |
lens of camera-type eye | 1.82e-08 | 4 |
epithelium of lens | 1.82e-08 | 4 |
lens placode | 1.82e-08 | 4 |
lens vesicle | 1.82e-08 | 4 |
neurectoderm | 1.96e-08 | 86 |
atypical epithelium | 2.11e-08 | 4 |
regional part of telencephalon | 2.28e-08 | 32 |
cerebral hemisphere | 2.28e-08 | 32 |
brain grey matter | 6.31e-08 | 34 |
gray matter | 6.31e-08 | 34 |
telencephalon | 6.31e-08 | 34 |
structure with developmental contribution from neural crest | 7.30e-08 | 132 |
ecto-epithelium | 4.99e-07 | 104 |
brain | 6.33e-07 | 68 |
future brain | 6.33e-07 | 68 |