FFCP PHASE1:Hg19::chr1:36941538..36941549,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1441 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2439 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=378bp_to_ENST00000480825_5end | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_12_at_CSF3R_5end | |||
|id=chr1:36941538..36941549,- | |||
|ontology_enrichment_celltype=CL:0002057!8.66e-82!42;CL:0000860!1.27e-75!45;CL:0000766!5.05e-57!76;CL:0002194!4.08e-53!63;CL:0000576!4.08e-53!63;CL:0000040!4.08e-53!63;CL:0000559!4.08e-53!63;CL:0002009!3.54e-51!65;CL:0000839!8.22e-47!70;CL:0000557!5.19e-46!71;CL:0000763!6.82e-45!112;CL:0000049!6.82e-45!112;CL:0000738!7.14e-32!140;CL:0000037!2.04e-30!172;CL:0000566!2.04e-30!172;CL:0002087!1.24e-29!119;CL:0000988!2.39e-29!182;CL:0002032!2.89e-29!165;CL:0000837!2.89e-29!165;CL:0002031!6.96e-25!124;CL:0000775!4.99e-10!3;CL:0000094!1.38e-09!8;CL:0000134!1.44e-08!358;CL:0002320!3.59e-08!365;CL:0000219!8.73e-08!390;CL:0002393!1.52e-07!9;CL:0002397!1.52e-07!9;CL:0000771!2.62e-07!2;CL:0000081!7.89e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.53e-65;33!CL:0002057;4.53e-65;33!CL:0000473;1.08e-49;39!CL:0000234;1.08e-49;39!CL:0000576;8.14e-39;48!CL:0000766;1.78e-33;69!CL:0000775;2.98e-17;3!CL:0000094;3.37e-17;8!CL:0000081;1.97e-12;11!CL:0000771;3.52e-12;2!CL:0000763;5.42e-12;100!CL:0002087;2.95e-09;104!CL:0000738;9.77e-09;136!CL:0002393;3.06e-08;6!CL:0002397;3.06e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.65e-70,42;CL:0002057,7.65e-70,42;CL:0000473,1.33e-65,48;CL:0000234,1.33e-65,48;CL:0000766,2.81e-61,72;CL:0002194,2.30e-51,59;CL:0000576,2.30e-51,59;CL:0000040,2.30e-51,59;CL:0000559,2.30e-51,59;CL:0002009,1.58e-49,61;CL:0000839,2.06e-45,66;CL:0000557,1.16e-44,67;CL:0000763,5.98e-39,108;CL:0000049,5.98e-39,108;CL:0000738,1.10e-29,136;CL:0002032,4.09e-24,161;CL:0000837,4.09e-24,161;CL:0002087,7.50e-24,115;CL:0000037,7.53e-23,168;CL:0002031,1.24e-22,120;CL:0000988,2.28e-21,177;CL:0000775,3.43e-17,3;CL:0000094,3.68e-17,8;CL:0000081,2.09e-12,11;CL:0000771,3.53e-12,2;CL:0000134,1.68e-07,354;CL:0002320,3.12e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;6.63e-54;42!CL:0000049;7.20e-12;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.08e-58!102;UBERON:0003061!3.08e-58!102;UBERON:0002193!6.96e-52!112;UBERON:0002371!1.05e-39!80;UBERON:0001474!3.15e-36!86;UBERON:0004765!2.42e-29!101;UBERON:0001434!2.42e-29!101;UBERON:0002405!1.49e-27!115;UBERON:0003081!1.03e-21!216;UBERON:0000178!3.70e-21!15;UBERON:0000179!3.70e-21!15;UBERON:0000463!3.70e-21!15;UBERON:0002204!7.93e-14!167;UBERON:0002384!1.24e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.51e-22;15!UBERON:0000179;9.51e-22;15!UBERON:0000463;9.51e-22;15!UBERON:0002390;4.69e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.15e-53,98;UBERON:0003061,2.15e-53,98;UBERON:0002193,6.85e-48,108;UBERON:0002371,8.74e-39,76;UBERON:0001474,1.42e-35,82;UBERON:0004765,5.95e-32,90;UBERON:0002405,9.41e-31,93;UBERON:0001434,3.13e-28,100;UBERON:0003081,1.80e-22,203;UBERON:0000178,8.69e-22,15;UBERON:0000179,8.69e-22,15;UBERON:0000463,8.69e-22,15;UBERON:0002204,9.90e-15,167;UBERON:0000926,4.36e-12,315;UBERON:0004120,4.36e-12,315;UBERON:0006603,4.36e-12,315;UBERON:0002384,7.25e-07,371 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66198622559563,2.00544447470142,1.30206522429511,0,0,0,2.18097358169347,1.51150377475524,0.970336244751265,1.39457422143411,1.6446715520873,2.47765096716083,1.7261543539329,0.256160706529101,0.236482229888585,1.37898272294647,1.29096936716765,1.35426486594342,2.82363509313907,0.545812300115692,0,1.83650335422542,0.962787081228281,0.639337125799041,0.989553900560148,2.59302754908121,1.70489900213078,1.7412554317715,1.13477044938228,0.622822248995575,0.75374599577023,1.5644487552606,1.3031330682307,1.21079900526674,1.10483290796269,1.58231193720442,0.845021145247767,0,0,2.13424399178341,1.05123824989054,0.48217676009124,0.570025487482497,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.22462922052443,11.6334079244498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50677127429638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.7291475028908,50.8574480646842,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647142602455851,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.07447609232169,6.88173486428138,6.26611905891579,2.1440859791201,2.05681136543097,2.59389324477087,1.62009431171434,4.75875105776562,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0.280797178113459,0.228234679033192,0.156679895773023,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0.46112780877612,0.269272933229316,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124149428591716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p12@CSF3R | |||
}} |
Revision as of 17:52, 10 January 2014
Short description: | p12@CSF3R |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_CSF3R_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | 378bp_to_ENST00000480825_5end |
EntrezGene: | CSF3R |
HGNC: | 2439 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 7.65e-70 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.65e-70 | 42 |
defensive cell | 1.33e-65 | 48 |
phagocyte | 1.33e-65 | 48 |
myeloid leukocyte | 2.81e-61 | 72 |
monopoietic cell | 2.30e-51 | 59 |
monocyte | 2.30e-51 | 59 |
monoblast | 2.30e-51 | 59 |
promonocyte | 2.30e-51 | 59 |
macrophage dendritic cell progenitor | 1.58e-49 | 61 |
myeloid lineage restricted progenitor cell | 2.06e-45 | 66 |
granulocyte monocyte progenitor cell | 1.16e-44 | 67 |
myeloid cell | 5.98e-39 | 108 |
common myeloid progenitor | 5.98e-39 | 108 |
leukocyte | 1.10e-29 | 136 |
hematopoietic oligopotent progenitor cell | 4.09e-24 | 161 |
hematopoietic multipotent progenitor cell | 4.09e-24 | 161 |
nongranular leukocyte | 7.50e-24 | 115 |
hematopoietic stem cell | 7.53e-23 | 168 |
hematopoietic lineage restricted progenitor cell | 1.24e-22 | 120 |
hematopoietic cell | 2.28e-21 | 177 |
neutrophil | 3.43e-17 | 3 |
granulocyte | 3.68e-17 | 8 |
blood cell | 2.09e-12 | 11 |
eosinophil | 3.53e-12 | 2 |
mesenchymal cell | 1.68e-07 | 354 |
connective tissue cell | 3.12e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.15e-53 | 98 |
blood island | 2.15e-53 | 98 |
hemolymphoid system | 6.85e-48 | 108 |
bone marrow | 8.74e-39 | 76 |
bone element | 1.42e-35 | 82 |
skeletal element | 5.95e-32 | 90 |
immune system | 9.41e-31 | 93 |
skeletal system | 3.13e-28 | 100 |
lateral plate mesoderm | 1.80e-22 | 203 |
blood | 8.69e-22 | 15 |
haemolymphatic fluid | 8.69e-22 | 15 |
organism substance | 8.69e-22 | 15 |
musculoskeletal system | 9.90e-15 | 167 |
mesoderm | 4.36e-12 | 315 |
mesoderm-derived structure | 4.36e-12 | 315 |
presumptive mesoderm | 4.36e-12 | 315 |
connective tissue | 7.25e-07 | 371 |