FFCP PHASE1:Hg19::chr1:20915530..20915635,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=978 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1712 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000461985_5end | |||
|description=CAGE_peak_1_at_CDA_5end | |||
|id=chr1:20915530..20915635,+ | |||
|ontology_enrichment_celltype=CL:0002194!1.92e-24!63;CL:0000576!1.92e-24!63;CL:0000040!1.92e-24!63;CL:0000559!1.92e-24!63;CL:0000766!2.34e-24!76;CL:0000860!5.28e-23!45;CL:0002009!1.35e-22!65;CL:0002057!2.64e-21!42;CL:0000839!8.09e-19!70;CL:0000557!3.21e-18!71;CL:0000763!4.66e-08!112;CL:0000049!4.66e-08!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;9.43e-17;39!CL:0000234;9.43e-17;39!CL:0000860;2.00e-16;33!CL:0002057;2.00e-16;33!CL:0000576;6.25e-13;48!CL:0000766;4.64e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.31e-25,48;CL:0000234,3.31e-25,48;CL:0002194,1.93e-22,59;CL:0000576,1.93e-22,59;CL:0000040,1.93e-22,59;CL:0000559,1.93e-22,59;CL:0000766,3.24e-22,72;CL:0000860,9.75e-22,42;CL:0002057,9.75e-22,42;CL:0002009,1.70e-20,61;CL:0000839,1.49e-16,66;CL:0000557,4.61e-16,67;CL:0000763,2.22e-07,108;CL:0000049,2.22e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;6.53e-16;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!2.48e-23!448;UBERON:0004120!2.48e-23!448;UBERON:0006603!2.48e-23!448;UBERON:0002390!6.32e-19!102;UBERON:0003061!6.32e-19!102;UBERON:0002193!7.11e-18!112;UBERON:0002371!3.32e-17!80;UBERON:0003081!6.12e-16!216;UBERON:0000468!1.57e-14!659;UBERON:0000480!8.69e-14!626;UBERON:0000467!1.14e-13!625;UBERON:0002405!1.39e-13!115;UBERON:0001474!2.24e-13!86;UBERON:0002204!2.75e-12!167;UBERON:0000922!1.07e-11!612;UBERON:0004765!1.18e-11!101;UBERON:0001434!1.18e-11!101;UBERON:0002050!1.08e-10!605;UBERON:0005423!1.08e-10!605;UBERON:0000923!1.92e-10!604;UBERON:0005291!1.92e-10!604;UBERON:0006598!1.92e-10!604;UBERON:0002532!1.92e-10!604;UBERON:0000062!6.90e-09!511;UBERON:0000479!1.16e-07!787;UBERON:0001737!1.65e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.21e-07;9!UBERON:0001557;1.21e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,4.63e-18,315;UBERON:0004120,4.63e-18,315;UBERON:0006603,4.63e-18,315;UBERON:0002390,2.88e-17,98;UBERON:0003061,2.88e-17,98;UBERON:0002193,7.73e-16,108;UBERON:0002371,3.03e-15,76;UBERON:0003081,1.26e-12,203;UBERON:0002405,1.53e-12,93;UBERON:0004765,5.15e-12,90;UBERON:0001474,1.08e-11,82;UBERON:0000922,3.92e-10,592;UBERON:0005423,4.07e-10,581;UBERON:0002204,4.22e-10,167;UBERON:0002050,1.99e-09,564;UBERON:0001434,2.05e-09,100;UBERON:0000923,2.64e-08,560;UBERON:0010316,2.64e-08,560;UBERON:0005291,2.64e-08,560;UBERON:0006598,2.64e-08,560;UBERON:0010317,2.64e-08,560;UBERON:0002532,2.64e-08,560;UBERON:0001737,1.22e-07,9 | |||
|phase1_expression=7.26713517082227,11.3473277662221,10.1487170949099,29.0212565224078,6.25745532198203,20.9361245784089,5.06599756336621,3.79031924056099,1.56711376919903,44.9693103797761,69.0823156292703,61.3820255685784,180.152846130034,2.97039247104112,1.98838425436749,2.6893005858071,1.20538905604795,0.730310090387373,2.92759679274304,0.123121058076788,0,0.626909442956176,0,0,0.376627918784408,0,0,0,79.4595839234786,57.5744097145819,142.740465697422,87.3450163254981,94.2774525775923,33.6476149251777,0.154934401160603,0,3.22960483268332,87.5312745480366,89.2422791242131,73.5666851726738,10.3001118150365,34.3327285980118,35.0302771982494,118.644962844125,91.4459783726919,107.464739106203,130.160260667183,94.1574463569981,100.964276911804,120.830804775303,100.414996959407,115.639810415518,106.871161028352,109.086911525667,127.300897398681,146.264297824604,94.9713402201303,82.0240718224559,124.576144194957,94.9949920145237,111.244659889033,100.934497857135,101.128074414167,97.1792431214543,140.751480734863,95.3207177481115,100.274382088288,109.795666717197,112.640310378764,134.874272561877,135.609488589875,111.95640134022,105.065512630374,100.13500571186,89.0812016853532,113.425327220031,183.881969186812,179.010856267076,155.903819096168,88.9239760472695,70.4165037284779,82.7468616553792,0,5.46138611262132,1.77901850772711,8.96133467389665,0.800791974072025,2.87376219977242,3.96626923670917,4.77026877267682,0,2.93618594685469,1.14681968437569,3.96513985737078,11.7706798226123,2.10707267820062,0,0,0.822405995998037,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0,0,0.164437904603676,0.276350017785848,0,0,0,0,0.339928028092699,0.383220493601921,0,0.253019692019503,1.59282707162048,1.30216690771284,1.90090408889675,6.77588035849977,1.66382594500744,7.49584359314075,13.496303366509,0.821127996921047,0,0,0,4.87613732627923,2.01210257911091,1.02290049474824,109.516063172524,16.5441510509844,101.97194934842,23.858578411533,27.7381876072502,0.378139268656271,0.221729397462564,0.966182642624386,6.61444331263449,80.8735540009444,21.8762821242813,23.0428649494825,22.1144766370069,69.8029292724042,4.76981248610684,5.71994910780128,1.48583000531826,5.76410981363445,5.16140757063675,5.9013885273291,8.47961912886015,18.8774746294458,6.32771496462155,1.67195973229448,0.516833518338658,1.42306505074684,5.02080919147005,1.20848795132744,3.04108842287405,0.732186172644509,0.367663080345869,2.43042584364528,3.83988831621543,3.14341121676638,1.91439516821648,0,2.84779697870439,1.09921046358244,139.687242482227,349.002237733493,163.53526955345,4.47274756525787,0.379891534993739,14.5650098894541,0.573673241497627,6.73869926176878,8.97084160227691,2.1349799145941,29.1067707132249,0.311211035399766,0.808264032418128,0,1.81628913173918,0.576175924479999,0.70296429550139,4.99456122928513,5.13424639390004,15.9910088190427,6.22402842811954,3.23745888736263,2.94946694074722,0,1.96534907698829,0,0,0.247266929278557,94.6567816415547,109.229957556068,0.168336113954066,0.125118519871964,0.277064115484183,0,2.45190236639216,0.150238058906597,1.92834711372036,3.04962380671065,3.41691822109708,15.6829606858076,8.10245959427886,6.08009922506789,12.6243864622358,27.9175284497385,24.6413445072249,17.9284089496605,12.6216887122057,10.8618880397913,2.7479829659198,4.26011511019937,5.33986120606493,19.4994681157061,97.016948287975,87.5515047096579,45.6019306668516,22.6871093401047,23.0601796879384,32.6504979463347,17.4150572425822,34.3156357190855,57.3014453749053,42.2413737290503,19.2972281457866,6.90674606762403,78.9425477654364,67.1347917952715,403.426188135868,362.288498977841,304.637941772721,372.462745917294,382.378424382173,269.302152691095,422.696151082115,400.095567390581,311.645197126576,8.11971000087113,4.20725321410337,6.5851841813024,20.5812195939759,122.952383777176,89.437276717664,37.2197641209285,0,4.05861847192275,0.514703430895577,172.856699518585,88.7973850735195,56.4972824953365,27.5913566572418,0,1.03993478527958,0,0,0.117408694235822,0.577465791044295,0.925971025153221,1.33177906564219,0,0,108.335482678455,122.384230667821,150.860629723059,171.532916195802,388.206698267564,187.71022874892,1.88072897675981,33.7135368676196,50.2231309706427,0,0,0.414656231081544,0.576479813667846,0.12624243342638,0.253991577168676,0,0,3.4214489204541,0.102827492703324,0,0,1.56983518083505,0.87192013766656,1.3200891447771,0.517086863031111,57.2250313363012,12.67954128834,5.05282421511254,9.36066932202295,14.40361295868,7.09245660116391,16.2517529199821,2.00169191121407,15.7360265563518,23.8739697666423,10.0978217131058,1.06617584622764,9.50342247520115,2.71295439353627,2.61460037580088,7.29802835629016,220.139042960555,141.134242692428,141.258739453631,0.239624855491583,0,0,8.10775317338444,5.75333703141074,4.83464600747718,3.36255431980582,2.75843064282698,0.646882724578552,3.46526197955321,0,0,0,0,0,558.010232840651,514.557709830923,818.056223522734,1.2269149171914,7.00238729483548,1.35632511849868,0,0,3.94256037584837,0,1.50473049863859,0,3.1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| |||
|short_description=p1@CDA | |||
}} |
Revision as of 16:49, 10 January 2014
Short description: | p1@CDA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDA_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000461985_5end |
EntrezGene: | CDA |
HGNC: | 1712 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.31e-25 | 48 |
phagocyte | 3.31e-25 | 48 |
monopoietic cell | 1.93e-22 | 59 |
monocyte | 1.93e-22 | 59 |
monoblast | 1.93e-22 | 59 |
promonocyte | 1.93e-22 | 59 |
myeloid leukocyte | 3.24e-22 | 72 |
classical monocyte | 9.75e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.75e-22 | 42 |
macrophage dendritic cell progenitor | 1.70e-20 | 61 |
myeloid lineage restricted progenitor cell | 1.49e-16 | 66 |
granulocyte monocyte progenitor cell | 4.61e-16 | 67 |
myeloid cell | 2.22e-07 | 108 |
common myeloid progenitor | 2.22e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 4.63e-18 | 315 |
mesoderm-derived structure | 4.63e-18 | 315 |
presumptive mesoderm | 4.63e-18 | 315 |
hematopoietic system | 2.88e-17 | 98 |
blood island | 2.88e-17 | 98 |
hemolymphoid system | 7.73e-16 | 108 |
bone marrow | 3.03e-15 | 76 |
lateral plate mesoderm | 1.26e-12 | 203 |
immune system | 1.53e-12 | 93 |
skeletal element | 5.15e-12 | 90 |
bone element | 1.08e-11 | 82 |
embryo | 3.92e-10 | 592 |
developing anatomical structure | 4.07e-10 | 581 |
musculoskeletal system | 4.22e-10 | 167 |
embryonic structure | 1.99e-09 | 564 |
skeletal system | 2.05e-09 | 100 |
germ layer | 2.64e-08 | 560 |
germ layer / neural crest | 2.64e-08 | 560 |
embryonic tissue | 2.64e-08 | 560 |
presumptive structure | 2.64e-08 | 560 |
germ layer / neural crest derived structure | 2.64e-08 | 560 |
epiblast (generic) | 2.64e-08 | 560 |
larynx | 1.22e-07 | 9 |