FFCP PHASE1:Hg19::chr1:1149526..1149539,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7293 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11918 | |||
|TSSclassifier=strong | |||
|UniProt=P43489 | |||
|association_with_transcript=-8bp_to_,8bp_to_ENST00000497869,NM_003327_5end | |||
|coexpression_cluster_id=C99 | |||
|description=CAGE_peak_1_at_TNFRSF4_5end | |||
|id=chr1:1149526..1149539,- | |||
|ontology_enrichment_celltype=CL:0000738!1.66e-33!140;CL:0000988!2.00e-31!182;CL:0000037!5.64e-30!172;CL:0000566!5.64e-30!172;CL:0002032!2.58e-26!165;CL:0000837!2.58e-26!165;CL:0002087!2.74e-26!119;CL:0002031!6.35e-25!124;CL:0000084!6.26e-15!25;CL:0000827!6.26e-15!25;CL:0000766!1.78e-14!76;CL:0000791!2.93e-14!18;CL:0000789!2.93e-14!18;CL:0002420!2.93e-14!18;CL:0002419!2.93e-14!18;CL:0000790!2.93e-14!18;CL:0000763!4.48e-14!112;CL:0000049!4.48e-14!112;CL:0000557!7.23e-14!71;CL:0002009!1.17e-13!65;CL:0002194!1.37e-12!63;CL:0000576!1.37e-12!63;CL:0000040!1.37e-12!63;CL:0000559!1.37e-12!63;CL:0000839!1.97e-12!70;CL:0000542!3.15e-12!53;CL:0000051!3.15e-12!53;CL:0000838!1.28e-11!52;CL:0000451!3.90e-10!10;CL:0002057!1.44e-09!42;CL:0000625!7.20e-09!11;CL:0000990!9.15e-09!8;CL:0000860!2.42e-08!45;CL:0000624!5.30e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.81e-19;25!CL:0000791;3.12e-17;18!CL:0000789;3.12e-17;18!CL:0002419;3.12e-17;18!CL:0000451;1.34e-12;10!CL:0000625;1.18e-10;11!CL:0000990;1.63e-10;8!CL:0002087;2.32e-10;104!CL:0000624;9.34e-10;6!CL:0000473;7.19e-09;39!CL:0000234;7.19e-09;39!CL:0000860;1.90e-08;33!CL:0002057;1.90e-08;33!CL:0000738;4.20e-08;136!CL:0000542;1.17e-07;53!CL:0000988;3.95e-07;177!CL:0000840;7.20e-07;5!CL:0000576;8.86e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,8.30e-41,136;CL:0000988,1.48e-38,177;CL:0000037,3.27e-36,168;CL:0002032,7.42e-33,161;CL:0000837,7.42e-33,161;CL:0002087,1.08e-32,115;CL:0002031,1.85e-30,120;CL:0000084,9.03e-20,25;CL:0000827,9.03e-20,25;CL:0000791,1.46e-17,18;CL:0000789,1.46e-17,18;CL:0002420,1.46e-17,18;CL:0002419,1.46e-17,18;CL:0000790,1.46e-17,18;CL:0000766,6.08e-17,72;CL:0000763,1.22e-16,108;CL:0000049,1.22e-16,108;CL:0000542,5.54e-16,53;CL:0000051,5.54e-16,53;CL:0000557,1.12e-15,67;CL:0000838,4.30e-15,52;CL:0002009,8.22e-15,61;CL:0000839,9.25e-15,66;CL:0002194,2.84e-14,59;CL:0000576,2.84e-14,59;CL:0000040,2.84e-14,59;CL:0000559,2.84e-14,59;CL:0000451,1.75e-12,10;CL:0000625,6.41e-11,11;CL:0000473,9.88e-11,48;CL:0000234,9.88e-11,48;CL:0000990,2.14e-10,8;CL:0000624,7.90e-10,6;CL:0000860,1.37e-08,42;CL:0002057,1.37e-08,42;CL:0000134,2.08e-07,354;CL:0002320,6.74e-07,361;CL:0000840,8.18e-07,5;CL:0001029,8.18e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000790;3.12e-17;18!CL:0000051;1.17e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!7.17e-24!112;UBERON:0002390!4.92e-23!102;UBERON:0003061!4.92e-23!102;UBERON:0002371!1.34e-12!80;UBERON:0001474!2.64e-11!86;UBERON:0002405!7.39e-11!115;UBERON:0000178!3.66e-10!15;UBERON:0000179!3.66e-10!15;UBERON:0000463!3.66e-10!15;UBERON:0007023!1.36e-09!115;UBERON:0004765!1.51e-08!101;UBERON:0001434!1.51e-08!101;UBERON:0003081!2.32e-08!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.91e-13;15!UBERON:0000179;3.91e-13;15!UBERON:0000463;3.91e-13;15!UBERON:0002390;3.44e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.35e-25,98;UBERON:0003061,1.35e-25,98;UBERON:0002193,4.90e-24,108;UBERON:0002405,6.58e-15,93;UBERON:0000178,3.43e-13,15;UBERON:0000179,3.43e-13,15;UBERON:0000463,3.43e-13,15;UBERON:0002371,1.17e-12,76;UBERON:0001474,4.88e-11,82;UBERON:0004765,3.01e-09,90;UBERON:0001434,4.39e-08,100;UBERON:0003081,5.31e-08,203;UBERON:0002384,6.02e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0,3.2857764471619,3.7766271146975,3.69940672174292,1.18009283054671,1.15148819429164,0.619264493264304,0,0,0,0,0,0.587200878669695,1.10799081706375,1.40381113229099,1.51907609501096,1.56740831967947,1.94336199611388,1.80302897343931,0.290796477559129,0,0,0.464858073811369,2.46700732813095,4.64559556342655,1.43846196161075,1.2808035326455,0.709446689665756,0.689491361473237,4.51839278508678,1.35426486594342,0.564727018627814,1.09162460023138,2.47195832889593,2.44867113896722,1.60464513538047,3.19668562899521,0,0,0.426224750532694,5.22376629531451,10.7803192691317,11.2108004819203,0,1.0429658368404,0.65156653411535,3.02699751316684,10.3117738076518,6.32924774881769,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0.853460445133014,0,0,0,0,0,0,0,2.64342657158052,7.8471198817415,0,6.68813218387032,11.0043013569766,13.3640974349681,22.9045498685229,2.93330039970231,6.15482147455153,1.94826728407911,41.1104585906291,22.6846548755625,18.6088471450242,9.74893909554056,46.6252403801458,61.6481307433823,30.5854502562838,30.3985019564433,23.1842468588042,0.741432815810302,0,0,14.0503584944982,10.7301738208538,19.9303918379925,6.83153168452658,5.41561204350964,1.95325036156926,1.90090408889675,2.86092726247768,3.71161172347813,3.74792179657038,2.8413270245282,4.10563998460523,2.41928091869679,1.33720097891754,0.434473211648397,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0,0,0.589405839739707,0,0,8.43823223502177,9.40300581416043,10.1048049994338,3.10037811596945,5.14795419702115,1.48583000531826,0.198762407366705,0,0,0,0,0,0,0.516833518338658,0.35576626268671,0.66944122552934,0.805658634218294,0,0.488124115096339,0,0,0,0.22452937262617,0,0,0,0,7.9068250461638,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0.492434012174795,12.6362303175188,0.445893486866185,0,0,0,0,0,0,0,0,1.65862492432618,1.29707958075265,2.01987893482208,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0.514414748524284,0,0.266422179016099,0,0,0,0.977208552881205,0,0,0,0,0,3.64871341923571,1.00451418286425,2.10833939483032,0,0,0,0,0,0,0.112085143993527,2.95546140302891,3.66566877261179,2.95188983443421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68798433959754,1.2942852049117,3.09509917629989,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0.114814448164607,0,0,1.80479845162965,0.231046011313244,0.784349769176855,0,0,0,0,0.863663664408557,6.16909010761157,0.541892875087706,3.51182841698397,0.254876273045038,0.831076008928724,0,0,0,0,0,0,2.57602529119306,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60044461320525,0,0,0,0,1.52234282769651,2.29391162142713,1.70894156152249,1.42939065274673,0,1.94541993357815,0.540031437238115,2.37937552888281,0,0,0,3.71606350251437,0,15.3666381632574,9.40615009100052,46.1028348009806,0.5745161103971,4.65681881992542,0,1.68478306868075,0,0,15.038068625404,0.677167111206413,0,0,0,0,0,0,0,0,0,0,0,7.66065526394986,0,0,3.07667176470977,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0.19924798825107,3.59169090190492,0,0,0.738508832766417,0,0,0,0,0.394573622547734,4.7896618469388,0,0,0,0,0,0,2.89999830173917,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0.638002319463839,0.0915975934018623,0.533034776018635,0,21.1923346133283,0,0,0,0,0,0.158936578980379,0,0,0,0,0,1.50377859655677,0,47.4433805888995,83.0349669720499,80.8225889172225,0,1.60515529459758,0,0,0,0,0,1.20990716048664,0,0.063186579628488,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.484945082442097,0,0.451961481561065,0,0,0.126621591911757,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,345.17109616874,0.279282401272254,0.916641696046735,2.87149209830726,2.39614800598789,2.14613024068285,2.67805748930247,2.01550417460179,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,12.598537926884,0.77380195455795,0.0607495566580247,0,0.236417121897595,1.20645552710496,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.56289790162467,1.57204305099666,1.65695622138878,1.9846640872478,0,0.487170393523584,0,0.544017803369474,4.5124180924086,2.14441903734423,0,0,0,0.244052529803926,0.1251909307065,0,0,0.18628920882415,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,3.50748555910899,9.16767398162205,3.10774249086104,0,0,0,186.788227728505,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0.123935764259002,1.67593475391973,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.276629009856872,0.161475645631851,0,0,0,0,0,0,0,0.596748666348824,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.19024743058172,0,0,0,0,0,0.535701835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| |||
|short_description=p1@TNFRSF4 | |||
}} |
Revision as of 15:45, 10 January 2014
Short description: | p1@TNFRSF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TNFRSF4_5end |
Coexpression cluster: | C99_hairy_mycosis_submaxillary_salivary_cord_kidney_parotid |
Association with transcript: | -8bp_to_, 8bp_to_ENST00000497869, NM_003327_5end |
EntrezGene: | TNFRSF4 |
HGNC: | 11918 |
UniProt: | P43489 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.35e-25 | 98 |
blood island | 1.35e-25 | 98 |
hemolymphoid system | 4.90e-24 | 108 |
immune system | 6.58e-15 | 93 |
blood | 3.43e-13 | 15 |
haemolymphatic fluid | 3.43e-13 | 15 |
organism substance | 3.43e-13 | 15 |
bone marrow | 1.17e-12 | 76 |
bone element | 4.88e-11 | 82 |
skeletal element | 3.01e-09 | 90 |
skeletal system | 4.39e-08 | 100 |
lateral plate mesoderm | 5.31e-08 | 203 |
connective tissue | 6.02e-07 | 371 |