NonredundantMotifs:107: Difference between revisions
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|entrez_gene_id=2305
|motif_cluster_2013_march_motif_members= /HOCOMOCO:FOXP3_f1~FOXM1_f1
|name=known107
|representative_motif_db=HOCOMOCO
|representative_...") |
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;1.269047619047619;3.3738095238095167;4.364285714285718;3.992857142857141!2;0.0;1.9809523809523761;1.9809523809523761;9.038095238095234!3;3.095238095238094;0.0;0.9904761904761905;8.914285714285718!4;2.104761904761906;1.114285714285714;8.666666666666671;1.114285714285714!5;6.314285714285718;0.0;0.0;6.685714285714282!6;0.0;1.9809523809523761;4.209523809523812;6.809523809523811!7;0.0;1.114285714285714;0.0;11.885714285714283!8;2.104761904761906;1.114285714285714;9.780952380952376;0.0!9;3.961904761904765;0.9904761904761905;1.114285714285714;6.933333333333329!10;0.0;0.0;0.9904761904761905;12.009523809523811!11;0.0;1.114285714285714;1.9809523809523761;9.904761904761905!12;4.209523809523812;2.104761904761906;0.866666666666667;5.819047619047624!13;0.65;5.72619047619047;0.65;5.97380952380953 | |||
|entrez_gene_id=2305 | |entrez_gene_id=2305 | ||
|motif_cluster_2013_march_motif_members= /HOCOMOCO:FOXP3_f1 | |motif_cluster_2013_march_motif_members= /HOCOMOCO:FOXM1_f1~FOXP3_f1 | ||
|name= | |name=non-redundant107 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id=FOXM1_f1 | |representative_motif_id=FOXM1_f1 | ||
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|uniprot_entry_name=FOXM1_HUMAN | |uniprot_entry_name=FOXM1_HUMAN | ||
}} | }} | ||
Latest revision as of 14:24, 7 October 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant107
- db :HOCOMOCO
- Id :FOXM1_f1
- name :
- score :0.08165116359994255
- External refs:
- Internal refs:
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Sub Motif Members
