MCL coexpression mm9:2404: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0.018749916884781,-0.420840784653112,-0.420840784653112,-0.340785417896772,-0.420840784653112,-0.376554974786322,-0.398046081937327,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.388870180708013,-0.420840784653112,-0.36540772992007,-0.297756278879422,-0.420840784653112,-0.375169270902549,-0.369481575081042,-0.420840784653112,0.316173170588891,-0.401173855672745,-0.420840784653112,-0.390698548350855,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.393290054234952,-0.404144299934993,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.370612334146775,-0.420840784653112,-0.420840784653112,0.439718426115963,0.461339110824207,0.518264360743477,0.144458135521035,-0.0893083513072457,0.0854447202563106,0.206773399212494,0.0758060564961364,0.0725348264202215,-0.404000284099625,-0.420840784653112,-0.313788087598346,0.947497111344961,0.827785822212923,0.836190986859434,-0.159560086287427,-0.174388106954397,-0.197161089920383,0.260737085238786,0.0673129793036852,-0.107524268818382,0.0319286217178904,-0.144537989710112,-0.0005438513727403,-0.118373766259151,-0.196434319249395,-0.203420616245264,-0.237654779040247,-0.115104606277007,-0.0912961661035623,-0.252582062380917,-0.232607929840373,-0.253351840611729,0.093351594190623,0.0913493193408081,0.046918636783004,-0.162084031990961,-0.182192825507148,-0.106359524594848,-0.161269327961098,-0.167028031774898,-0.181249777428753,-0.111880180152422,-0.00512736510420187,-0.165778709664709,0.336262837487104,0.332147432530474,0.547892800254794,0.0554680072027679,-0.3276154215724,-0.316302367589302,-0.303409970076214,-0.226496555086126,-0.0383522202335779,0.00907060189634944,0.0740803582533752,0.0503818647866928,0.140104804417987,-0.0145352750291149,0.107946686077359,0.143655268615308,-0.27612226961669,-0.200283503557091,-0.376418831780117,0.0619384830144352,0.0658442715921895,0.434385358745409,0.195169067449306,0.391902336635291,0.402934106486609,0.399244904956214,0.30981040026186,0.210314238529165,0.948610286918288,0.165104026127253,-0.214424570847632,0.0657424688875487,-0.0694115882349407,-0.131578651239198,0.026524582419655,-0.146065052537495,-0.107169972331624,-0.153854890067936,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.0823081666698391,-0.0369609400610307,-0.168735565069835,-0.0487321065427003,-0.157246433781618,0.110020944921673,-0.114246518573967,0.152433949683505,-0.0063806491392029,-0.0242876426257772,-0.0681595919725272,0.126603838459291,-0.0788290125699386,0.0164012126669928,-0.00762345418985697,-0.0352536443426724,-0.002580518976082,-0.0645430394827323,-0.0106213793973726,0.161016454290118,0.0780175537989728,-0.0128836279980847,-0.0324022683158448,0.0647478351873741,0.00888147128016821,0.0122250084282803,0.137918943151115,-0.420840784653112,-0.420840784653112,-0.420840784653112,0.245566470873206,0.337932234109314,0.232706381342998,0.278437566441801,0.35013054294024,0.333493319087838,0.405187285429607,0.463744010868469,0.429381851578448,0.318638750629794,0.393743802618995,0.377783973014256,0.392049264448624,0.381132253611781,0.323835671326292,-0.155268320851149,-0.0949673033883448,-0.327849508902757,-0.166333078722432,0.116123385224567,0.184167171304884,0.0893316689173054,0.139087834745764,0.100319467115797,0.0499683968614408,-0.0557101890881266,0.0413376475126777,0.0449452191445606,-0.0149257238779369,0.0874665030682234,0.0205567961260728,-0.0036417121920465,0.0243729544522911,0.0468571771595,0.152219214920961,0.204516932407891,0.206327148575451,0.172796336807689,0.193163157500865,0.26814062298855,0.24596328312096,0.26003447347529,0.142548149756183,-0.145199715453455,-0.142479611597073,-0.24128313930769,-0.238625811150513,-0.159115015037886,-0.194363092181144,-0.175972372824606,-0.0318771139149767,-0.0122767739469656,-0.164300802346664,-0.0802741247932965,0.020632484365188,-0.014044849624161,-0.142678886562057,-0.0845259740632375,-0.15619293274679,0.75561424594969,0.123098058131822,0.176423231770768,0.227370920400626,0.254280026589718,0.347252876208358,0.559131173563027,0.669041016669631,0.624095275061662,0.705054483594351,0.608529473874189,0.833064454076296,0.712306485051818,0.816913137695468,-0.420840784653112,-0.420840784653112,-0.0576297957891602,-0.111979028997717,0.0517727816144193,-0.0364214846637299,0.0833190760043337,0.0900439946804196,0.282085778627575,0.329954325753364,0.282154249826927,0.355212815226417,0.432221433879432,0.391408735525329,0.274761452032014,0.395278220149582,0.318857144203598,-0.00802261117524165,0.168879699606356,0.0821426298699511,0.0993701450495209,0.222389716272592,-0.108386280014929,0.0423163603352745,-0.0641850711356197,-0.0463426473862703,-0.0793707127427506,0.0177680652423171,0.0457903182923004,-0.0193454617961718,-0.0184704397112001,-0.0986810431796716,-0.0425377288116817,-0.101975926084328,-0.00872361993464332,0.0860176155113401,-0.0241473830883682,0.0056759719351877,0.0760687968747226,0.0102661289683709,0.0357602369100147,-0.0789515495998181,0.604445711070826,0.712144095902207,-0.0317878212199803,-0.0321102097357817,0.0149559601931893,-0.0779448772528805,-0.119907367002758,-0.139300882002514,-0.0328905038896185,-0.0967072436066089,-0.161598277000475,0.315928217943409,0.233993860989222,-0.0040478203185108,-0.0889957979686153,-0.0606580308572695,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.103349094800788,0.0997753224133763,0.0769113605101485,0.100243636740947,0.133471529841712,0.151722803983797,0.134954577460238,0.110226027798559,0.0497209104850262,0.0580212960781871,-0.153837405844297,-0.290341347943166,0.118217382031076,0.149794716946188,0.0951526842118352,0.0741129751558342,0.0712023254453552,0.0023330698748428,-0.0137427464363837,-0.134917687314205,-0.194451708813926,-0.047401343411146,-0.254141012890616,-0.169026575917365,-0.164891441999298,-0.145495086765582,-0.154630229042686,-0.115136541308827,-0.185371436709129,-0.202642616673444,-0.206809435392388,-0.245212833209529,-0.236478703051089,-0.210213348438655,-0.270513808187017,-0.202276853090241,-0.00336451374910515,0.231314089257703,0.125094400555855,0.441022125660698,0.282231709668039,0.420669920853901,0.165637236667582,0.0227278437563061,0.0590145845204936,-0.193148551558147,-0.13777292126048,-0.0675726580663835,-0.0758843102110115,-0.149229242856101,-0.320888282445687,-0.272066578714272,-0.196544848743036,-0.222299365370892,-0.273765335990579,0.070433492496691,-0.00865651155037475,-0.0376017939229381,0.0315945932761719,-0.0213021473099191,0.0471040133312255,0.14126080712183,0.135586872570186,0.157505934283832,0.138858986742199,0.0925426432702421,0.086123163368468,0.123564335075876,0.091549624862909,0.0953977129630791,-0.0329999095737952,0.110010874761432,0.0661356270394128,0.172768678020598,0.0957989031368554,0.114436915922457,0.154181190123724,0.161548520269027,0.109931842483354,0.091643024549618,0.114307457108492,0.0651202219456199,0.130413254471013,0.0723308795117571,0.132176494860543,0.0876121123369886,0.0879871900306724,0.0682371354192627,0.107724381086344,0.108267591634151,0.0150699235074944,0.124343828069496,0.0704815358002075,0.0313010361548676,0.118242020342434,0.0395134432689513|coexpression_dpi_cluster_scores_median=0.011317546396491,-0.331341963709699,-0.331341963709699,-0.273959064344071,-0.331341963709699,-0.331341963709699,-0.28575255827813,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.267400755819501,-0.331341963709699,-0.331341963709699,-0.18823841980273,-0.331341963709699,-0.299538117032723,-0.264552670260595,-0.331341963709699,0.309210701836478,-0.331341963709699,-0.331341963709699,-0.271057491105185,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.331341963709699,0.418170446946748,0.467943728171771,0.54542716602676,0.128980053866166,-0.130110153174291,0.0836675079085492,0.301088880758233,0.0826132666469129,0.0617564303387935,-0.297660962602725,-0.331341963709699,-0.264552670260595,0.848626205097132,0.805293506188739,0.734428505411311,-0.122313046874226,-0.174621182126012,-0.224738344069472,0.202631070943715,0.064795382244982,-0.107778502964028,0.0081476852634018,-0.139348136126426,0.0193368689577199,-0.138682069899573,-0.200173751092611,-0.21612947769746,-0.225118327089218,-0.0928134120302439,-0.0936649762761111,-0.211699133507199,-0.207752721511286,-0.242151010962864,0.111394996609538,0.10941505755106,0.0636378067625985,-0.161419896624861,-0.170454569268818,-0.060200387026122,-0.111452325051581,-0.166449899258699,-0.155851372441906,-0.0598047798959781,0.0068471837611539,-0.131222853085914,0.293275780581959,0.295191096770999,0.620124197009284,0.0473979875642008,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.250953650731623,-0.0382522311146085,0.000292378859365894,0.068566068021916,0.0218928939568389,0.149251738319576,-0.0405902467292507,0.127973541772834,0.164124214636112,-0.222669341996747,-0.179372675607568,-0.331341963709699,0.0759518624417141,0.0680093192103515,0.482880440879686,0.204996606187574,0.488422390092598,0.49273303382729,0.465384628871464,0.351246045180896,0.243057426492486,1.01403661547837,0.132929993837736,-0.193731154506046,0.0406578142012724,-0.0234596482601667,-0.136349319963786,-0.0360724101413115,-0.135530073727318,-0.0940408811415106,-0.166698093201057,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.0557853017363238,-0.0386592674802931,-0.154620106701904,-0.0748013689995655,-0.178358853963604,0.111055908570091,-0.0725460925972027,0.149294394237982,-0.0311424111912882,-0.00697985285046625,-0.0138738816580213,0.160215670123892,-0.0746331548577195,0,-0.0181181210872244,-0.0280533979138628,0.0095716353356055,-0.0657861655135165,-0.0390602590632984,0.115322427100035,0.0415994660550737,-0.031594657641547,-0.0125241321097593,0.0645685157536292,-0.00190373003228409,0.0275515995695076,0.132016252390659,-0.331341963709699,-0.331341963709699,-0.331341963709699,0.273686774171359,0.426761227955826,0.26504295342457,0.326712790384364,0.432304524067416,0.324543344773555,0.480220911973912,0.485552233462458,0.392133264665153,0.346583395674509,0.449396901439548,0.365382164280451,0.416521297825073,0.428118825848871,0.284342241150845,-0.175311522747005,-0.0987391879650723,-0.269347779876129,-0.160303188478155,0.0681534405331473,0.188660686347126,0.0939529873293313,0.152134812465164,0.125458270738043,0.052639444313889,-0.0667892934491045,0.0433845034391971,0.0552261976197565,-0.00284941241092606,0.103237356675267,0.0412996782379281,0.029667550213787,0.0129241695151555,0.0479345404940038,0.144737322697789,0.199146854276746,0.201618425352877,0.186511068091453,0.209552075481111,0.265896897497492,0.201404100972028,0.285098148319745,0.10914852504319,-0.109419901382759,-0.157797132846854,-0.259348013417965,-0.256742552635223,-0.128380479306291,-0.198949064568445,-0.158850630688622,-0.0249901990578751,-0.0226616438310942,-0.148186758124796,-0.0710641392054015,0.0158092281053343,-0.0161257974356984,-0.11292055839728,-0.0879041169594555,-0.184673169338844,0.673117748189655,0.148088384754706,0.156987395843093,0.259416553712763,0.312441300203876,0.371613532651262,0.537874802813892,0.721332214368437,0.551242346727262,0.740447335503873,0.605196059909442,0.784195863715403,0.612441676001513,0.703671996660308,-0.331341963709699,-0.331341963709699,-0.0283897187174292,-0.120902141043482,0.042366749231781,-0.0255843633465254,0.111890860807917,0.0796787788141176,0.270045966978791,0.35267038985172,0.250018493739868,0.35629170321181,0.463362474613776,0.416528581787616,0.301403062679273,0.435108470785892,0.259348172226774,-0.0062850727643615,0.168694061743985,0.0928059674534857,0.0953501397697278,0.231113126321435,-0.135660198797503,0.0191559910924067,-0.00240771790453309,-0.0305799778222307,-0.0680162972597563,0.0677515526915068,0.053286644666127,0.0138607929640094,-0.016737914615782,-0.110261729168122,-0.0182861641742589,-0.0882889641111453,-0.0486940838446426,0.059353346165105,-0.0358672383497921,0.0119057552123823,0.072608934997912,0.0029661658278467,0.0011598636996275,-0.0667892934491045,0.640887220102228,0.829304692009035,-0.0437658034250861,-0.0207450861587877,-0.0189392512315567,-0.070922430474078,-0.125124736230317,-0.100995016688684,-0.0208066248067284,-0.0713169298107798,-0.17174831882113,0.304137226320652,0.231342560839466,-0.0177398217545791,-0.0738809908545002,-0.0966726023301175,-0.331341963709699,-0.331341963709699,-0.331341963709699,-0.0667892934491045,0.0564512838852587,0.069628657268066,0.0971820188920108,0.0944945059748964,0.19379541022901,0.173164266121469,0.094088070077088,0.0146551663933146,0.0328015229478458,-0.08126980462595,-0.264552670260595,0.0890183202897115,0.154380417127685,0.0720090318319655,0.0631219433240694,0.0379245146735802,-0.0185972465927951,-0.0223186454201619,-0.12337269724159,-0.178957461477075,-0.0204464473669375,-0.243729355520637,-0.176667222022387,-0.155381039169085,-0.139400631016192,-0.147280516359303,-0.075283818397539,-0.179307136567687,-0.234640460929623,-0.190889873199587,-0.219843805699792,-0.18630800370864,-0.225884025406858,-0.244605425684023,-0.181262489433897,0.0143249895330078,0.233827713896314,0.13472505587504,0.509740909140878,0.237959439289246,0.401629012533283,0.142706076560353,-0.0158332423563492,0.0109765389624757,-0.167202765718137,-0.0932179675122172,-0.0473731017110156,-0.121853165217456,-0.077163376313233,-0.331341963709699,-0.219331641109571,-0.191891756280324,-0.191248069170576,-0.240740367621212,0.0837932700773845,0.000812796882844745,-0.0254872319942055,0.0180271829022759,0.00317621444138605,0.0663655585425285,0.16530883208498,0.127176981908081,0.202483838421548,0.105908800685866,0.0742019544826737,0.112228370815127,0.126000694464036,0.0951326877000136,0.0961042613314277,0,0.119052955102474,0.064779871426393,0.208459933939081,0.0899263185444353,0.0874411087837725,0.166399917639074,0.151878294155398,0.134254288252471,0.0963348304000661,0.113771492838738,0.0705625030544974,0.10084289076534,0.0632321811630051,0.061265758140064,0.0653221326000395,0.0832900245972833,0.0734114389129253,0.07913811896572,0.117195714376345,0.0212014858476816,0.160556750179048,0.0791082939649355,0.0128631376284526,0.100502836694974,0.0231198995135138|gostat_on_MCL_coexpression=|ontology_enrichment_celltype=|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0004535!4.66e-13!23;UBERON:0001009!4.66e-13!23;UBERON:0004872!3.35e-12!33;UBERON:0007100!1.43e-10!18;UBERON:0000948!1.43e-10!18;UBERON:0005498!1.43e-10!18;UBERON:0004140!1.43e-10!18;UBERON:0009881!1.43e-10!18;UBERON:0004141!1.43e-10!18;UBERON:0003084!1.43e-10!18;UBERON:0007005!1.43e-10!18;UBERON:0004139!1.43e-10!18;UBERON:0004291!1.43e-10!18;UBERON:0002048!9.59e-09!14;UBERON:0000117!9.59e-09!14;UBERON:0000171!9.59e-09!14;UBERON:0000170!9.59e-09!14;UBERON:0005597!9.59e-09!14;UBERON:0000118!9.59e-09!14;UBERON:0005157!4.64e-08!20;UBERON:0000468!7.07e-08!333;UBERON:0003103!1.08e-07!43;UBERON:0005153!7.19e-07!17|tfbs_overrepresentation_for_novel_motifs=0.641384,0.128156,0.612053,0.688265,0.483253,0.704257,0.803568,0.370124,0.381467,0.162942,0.755749,0.790506,0.37041,0.81685,0.502646,0,1.02248,0.473993,0.352304,0.24402,0.570433,0.197567,0.815872,0.481455,0.620553,0.846564,0.342316,0.727368,0.535752,0.290745,0.711848,1.12823,0.471365,1.54138,0.503207,1.04375,0.460474,0.786577,0.434783,0.40068,0.478558,0.717547,0.544696,0.504971,0.66772,0.675898,0.938241,0.744678,0.49007,0.539131,1.0041,0.875451,0.282443,1.2746,1.29252,0.82458,0.549352,0.776619,0.331485,0.822375,1.10737,0.885556,0.39557,0.992216,0.8366,1.03484,1.43193,1.78579,1.1025,1.63712,0.590754,0.377213,0.205546,1.32691,0.323563,0.310084,0.854076,0.926147,1.08947,0.575233,0.37865,1.04072,0.884013,0.362446,1.20828,0.11855,0.129654,1.4408,0.943446,1.94914,1.50286,1.21342,1.14153,0.490141,0.430015,0.409166,0.961641,1.14445,0.938512,0.264911,2.02968,1.12793,1.25667,1.00472,1.00361,0.717061,1.06633,0.740267,0.580757,0.57247,0.633483,1.25851,0.576517,0.7614,1.51002,0.476467,0.143825,0.692434,1.02384,0.456123,1.33244,0.970073,0.848526,0.925183,1.56496,1.09333,0.812403,1.13449,1.43038,0.493609,1.23918,0.680176,1.40022,0.839311,1.53196,0.195549,0.650785,0.719099,1.482,2.31884,1.91709,1.43673,0.861473,1.1391,0.996781,0.718046,0.941555,2.27909,0.653418,0.485304,0.293812,0.184289,1.27621,0.416214,0.838313,1.35996,0.87653,1.28473,0.63863,0.650472,1.49167,1.20739,1.09379,0.630949,0.993294,0.830321,0.459159,0.788782,0.589293|tfbs_overrepresentation_jaspar=MA0003.1;0.331308,MA0004.1;0.6888,MA0006.1;0.497533,MA0007.1;0.672186,MA0009.1;2.60204,MA0014.1;0.0809287,MA0017.1;0.528196,MA0019.1;0.964875,MA0024.1;1.11019,MA0025.1;1.39562,MA0027.1;2.81824,MA0028.1;0.509589,MA0029.1;1.08753,MA0030.1;1.09438,MA0031.1;1.05719,MA0038.1;0.846479,MA0040.1;1.16866,MA0041.1;0.604221,MA0042.1;0.589368,MA0043.1;1.25564,MA0046.1;1.1929,MA0048.1;0.266382,MA0050.1;0.731539,MA0051.1;0.856094,MA0052.1;1.17701,MA0055.1;0.125758,MA0056.1;0,MA0057.1;0.251896,MA0058.1;0.581673,MA0059.1;0.59559,MA0060.1;0.403071,MA0061.1;0.438628,MA0063.1;0,MA0066.1;0.834648,MA0067.1;1.50873,MA0068.1;0.256913,MA0069.1;1.17737,MA0070.1;1.16732,MA0071.1;0.73062,MA0072.1;1.15853,MA0073.1;0.00221226,MA0074.1;0.795862,MA0076.1;0.550092,MA0077.1;1.13603,MA0078.1;0.891476,MA0081.1;0.621611,MA0083.1;1.25482,MA0084.1;1.84013,MA0087.1;1.21037,MA0088.1;0.201215,MA0089.1;0,MA0090.1;2.65101,MA0091.1;0.703314,MA0092.1;0.651119,MA0093.1;0.519148,MA0095.1;0,MA0098.1;0,MA0100.1;1.84237,MA0101.1;0.605676,MA0103.1;0.540576,MA0105.1;0.313353,MA0106.1;0.899777,MA0107.1;0.533522,MA0108.2;0.989014,MA0109.1;0,MA0111.1;1.60035,MA0113.1;0.869608,MA0114.1;0.43587,MA0115.1;1.25852,MA0116.1;0.497293,MA0117.1;1.22527,MA0119.1;0.606338,MA0122.1;1.24573,MA0124.1;1.45461,MA0125.1;1.37907,MA0130.1;0,MA0131.1;0.960068,MA0132.1;0,MA0133.1;0,MA0135.1;1.29308,MA0136.1;0.817395,MA0139.1;0.365453,MA0140.1;0.78318,MA0141.1;0.563066,MA0142.1;1.04199,MA0143.1;0.887119,MA0144.1;0.439506,MA0145.1;0.21199,MA0146.1;0.0944145,MA0147.1;0.453952,MA0148.1;1.68395,MA0149.1;0.611881,MA0062.2;0.319836,MA0035.2;0.788288,MA0039.2;0.0959929,MA0138.2;0.951653,MA0002.2;0.368961,MA0137.2;0.559766,MA0104.2;0.386166,MA0047.2;0.845655,MA0112.2;0.211985,MA0065.2;0.212467,MA0150.1;0.67206,MA0151.1;0,MA0152.1;0.84577,MA0153.1;1.31015,MA0154.1;0.263609,MA0155.1;0.230016,MA0156.1;0.549102,MA0157.1;1.0083,MA0158.1;0,MA0159.1;0.465802,MA0160.1;0.71003,MA0161.1;0,MA0162.1;0.10667,MA0163.1;0.0996272,MA0164.1;0.817786,MA0080.2;0.534538,MA0018.2;0.828253,MA0099.2;0.944966,MA0079.2;0.00774881,MA0102.2;1.8929,MA0258.1;0.419871,MA0259.1;0.441366,MA0442.1;0}} | ||
|coexpression_dpi_cluster_scores_mean=0.018749916884781,-0.420840784653112,-0.420840784653112,-0.340785417896772,-0.420840784653112,-0.376554974786322,-0.398046081937327,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.388870180708013,-0.420840784653112,-0.36540772992007,-0.297756278879422,-0.420840784653112,-0.375169270902549,-0.369481575081042,-0.420840784653112,0.316173170588891,-0.401173855672745,-0.420840784653112,-0.390698548350855,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.393290054234952,-0.404144299934993,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.370612334146775,-0.420840784653112,-0.420840784653112,0.439718426115963,0.461339110824207,0.518264360743477,0.144458135521035,-0.0893083513072457,0.0854447202563106,0.206773399212494,0.0758060564961364,0.0725348264202215,-0.404000284099625,-0.420840784653112,-0.313788087598346,0.947497111344961,0.827785822212923,0.836190986859434,-0.159560086287427,-0.174388106954397,-0.197161089920383,0.260737085238786,0.0673129793036852,-0.107524268818382,0.0319286217178904,-0.144537989710112,-0.0005438513727403,-0.118373766259151,-0.196434319249395,-0.203420616245264,-0.237654779040247,-0.115104606277007,-0.0912961661035623,-0.252582062380917,-0.232607929840373,-0.253351840611729,0.093351594190623,0.0913493193408081,0.046918636783004,-0.162084031990961,-0.182192825507148,-0.106359524594848,-0.161269327961098,-0.167028031774898,-0.181249777428753,-0.111880180152422,-0.00512736510420187,-0.165778709664709,0.336262837487104,0.332147432530474,0.547892800254794,0.0554680072027679,-0.3276154215724,-0.316302367589302,-0.303409970076214,-0.226496555086126,-0.0383522202335779,0.00907060189634944,0.0740803582533752,0.0503818647866928,0.140104804417987,-0.0145352750291149,0.107946686077359,0.143655268615308,-0.27612226961669,-0.200283503557091,-0.376418831780117,0.0619384830144352,0.0658442715921895,0.434385358745409,0.195169067449306,0.391902336635291,0.402934106486609,0.399244904956214,0.30981040026186,0.210314238529165,0.948610286918288,0.165104026127253,-0.214424570847632,0.0657424688875487,-0.0694115882349407,-0.131578651239198,0.026524582419655,-0.146065052537495,-0.107169972331624,-0.153854890067936,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.0823081666698391,-0.0369609400610307,-0.168735565069835,-0.0487321065427003,-0.157246433781618,0.110020944921673,-0.114246518573967,0.152433949683505,-0.0063806491392029,-0.0242876426257772,-0.0681595919725272,0.126603838459291,-0.0788290125699386,0.0164012126669928,-0.00762345418985697,-0.0352536443426724,-0.002580518976082,-0.0645430394827323,-0.0106213793973726,0.161016454290118,0.0780175537989728,-0.0128836279980847,-0.0324022683158448,0.0647478351873741,0.00888147128016821,0.0122250084282803,0.137918943151115,-0.420840784653112,-0.420840784653112,-0.420840784653112,0.245566470873206,0.337932234109314,0.232706381342998,0.278437566441801,0.35013054294024,0.333493319087838,0.405187285429607,0.463744010868469,0.429381851578448,0.318638750629794,0.393743802618995,0.377783973014256,0.392049264448624,0.381132253611781,0.323835671326292,-0.155268320851149,-0.0949673033883448,-0.327849508902757,-0.166333078722432,0.116123385224567,0.184167171304884,0.0893316689173054,0.139087834745764,0.100319467115797,0.0499683968614408,-0.0557101890881266,0.0413376475126777,0.0449452191445606,-0.0149257238779369,0.0874665030682234,0.0205567961260728,-0.0036417121920465,0.0243729544522911,0.0468571771595,0.152219214920961,0.204516932407891,0.206327148575451,0.172796336807689,0.193163157500865,0.26814062298855,0.24596328312096,0.26003447347529,0.142548149756183,-0.145199715453455,-0.142479611597073,-0.24128313930769,-0.238625811150513,-0.159115015037886,-0.194363092181144,-0.175972372824606,-0.0318771139149767,-0.0122767739469656,-0.164300802346664,-0.0802741247932965,0.020632484365188,-0.014044849624161,-0.142678886562057,-0.0845259740632375,-0.15619293274679,0.75561424594969,0.123098058131822,0.176423231770768,0.227370920400626,0.254280026589718,0.347252876208358,0.559131173563027,0.669041016669631,0.624095275061662,0.705054483594351,0.608529473874189,0.833064454076296,0.712306485051818,0.816913137695468,-0.420840784653112,-0.420840784653112,-0.0576297957891602,-0.111979028997717,0.0517727816144193,-0.0364214846637299,0.0833190760043337,0.0900439946804196,0.282085778627575,0.329954325753364,0.282154249826927,0.355212815226417,0.432221433879432,0.391408735525329,0.274761452032014,0.395278220149582,0.318857144203598,-0.00802261117524165,0.168879699606356,0.0821426298699511,0.0993701450495209,0.222389716272592,-0.108386280014929,0.0423163603352745,-0.0641850711356197,-0.0463426473862703,-0.0793707127427506,0.0177680652423171,0.0457903182923004,-0.0193454617961718,-0.0184704397112001,-0.0986810431796716,-0.0425377288116817,-0.101975926084328,-0.00872361993464332,0.0860176155113401,-0.0241473830883682,0.0056759719351877,0.0760687968747226,0.0102661289683709,0.0357602369100147,-0.0789515495998181,0.604445711070826,0.712144095902207,-0.0317878212199803,-0.0321102097357817,0.0149559601931893,-0.0779448772528805,-0.119907367002758,-0.139300882002514,-0.0328905038896185,-0.0967072436066089,-0.161598277000475,0.315928217943409,0.233993860989222,-0.0040478203185108,-0.0889957979686153,-0.0606580308572695,-0.420840784653112,-0.420840784653112,-0.420840784653112,-0.103349094800788,0.0997753224133763,0.0769113605101485,0.100243636740947,0.133471529841712,0.151722803983797,0.134954577460238,0.110226027798559,0.0497209104850262,0.0580212960781871,-0.153837405844297,-0.290341347943166,0.118217382031076,0.149794716946188,0.0951526842118352,0.0741129751558342,0.0712023254453552,0.0023330698748428,-0.0137427464363837,-0.134917687314205,-0.194451708813926,-0.047401343411146,-0.254141012890616,-0.169026575917365,-0.164891441999298,-0.145495086765582,-0.154630229042686,-0.115136541308827,-0.185371436709129,-0.202642616673444,-0.206809435392388,-0.245212833209529,-0.236478703051089,-0.210213348438655,-0.270513808187017,-0.202276853090241,-0.00336451374910515,0.231314089257703,0.125094400555855,0.441022125660698,0.282231709668039,0.420669920853901,0.165637236667582,0.0227278437563061,0.0590145845204936,-0.193148551558147,-0.13777292126048,-0.0675726580663835,-0.0758843102110115,-0.149229242856101,-0.320888282445687,-0.272066578714272,-0.196544848743036,-0.222299365370892,-0.273765335990579,0.070433492496691,-0.00865651155037475,-0.0376017939229381,0.0315945932761719,-0.0213021473099191,0.0471040133312255,0.14126080712183,0.135586872570186,0.157505934283832,0.138858986742199,0.0925426432702421,0.086123163368468,0.123564335075876,0.091549624862909,0.0953977129630791,-0.0329999095737952,0.110010874761432,0.0661356270394128,0.172768678020598,0.0957989031368554,0.114436915922457,0.154181190123724,0.161548520269027,0.109931842483354,0.091643024549618,0.114307457108492,0.0651202219456199,0.130413254471013,0.0723308795117571,0.132176494860543,0.0876121123369886,0.0879871900306724,0.0682371354192627,0.107724381086344,0.108267591634151,0.0150699235074944,0.124343828069496,0.0704815358002075,0.0313010361548676,0.118242020342434,0.0395134432689513 | |||
| | |||
}} |
Latest revision as of 18:29, 17 September 2013
Phase1 CAGE Peaks
Short description | |
---|---|
Mm9::chr4:57858091..57858110,+ | p3@Akap2 |
Mm9::chr4:57858112..57858137,+ | p1@Akap2 |
Mm9::chr4:57862028..57862032,+ | p@chr4:57862028..57862032 + |
Mm9::chrX:9057692..9057696,+ | p@chrX:9057692..9057696 + |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
no results for this coexpression
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
cardiovascular system | 4.66e-13 | 23 |
circulatory system | 4.66e-13 | 23 |
splanchnic layer of lateral plate mesoderm | 3.35e-12 | 33 |
primary circulatory organ | 1.43e-10 | 18 |
heart | 1.43e-10 | 18 |
primitive heart tube | 1.43e-10 | 18 |
primary heart field | 1.43e-10 | 18 |
anterior lateral plate mesoderm | 1.43e-10 | 18 |
heart tube | 1.43e-10 | 18 |
heart primordium | 1.43e-10 | 18 |
cardiac mesoderm | 1.43e-10 | 18 |
cardiogenic plate | 1.43e-10 | 18 |
heart rudiment | 1.43e-10 | 18 |
lung | 9.59e-09 | 14 |
respiratory tube | 9.59e-09 | 14 |
respiration organ | 9.59e-09 | 14 |
pair of lungs | 9.59e-09 | 14 |
lung primordium | 9.59e-09 | 14 |
lung bud | 9.59e-09 | 14 |
epithelial fold | 4.64e-08 | 20 |
multi-cellular organism | 7.07e-08 | 333 |
compound organ | 1.08e-07 | 43 |
epithelial bud | 7.19e-07 | 17 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 0.331308 |
MA0004.1 | 0.6888 |
MA0006.1 | 0.497533 |
MA0007.1 | 0.672186 |
MA0009.1 | 2.60204 |
MA0014.1 | 0.0809287 |
MA0017.1 | 0.528196 |
MA0019.1 | 0.964875 |
MA0024.1 | 1.11019 |
MA0025.1 | 1.39562 |
MA0027.1 | 2.81824 |
MA0028.1 | 0.509589 |
MA0029.1 | 1.08753 |
MA0030.1 | 1.09438 |
MA0031.1 | 1.05719 |
MA0038.1 | 0.846479 |
MA0040.1 | 1.16866 |
MA0041.1 | 0.604221 |
MA0042.1 | 0.589368 |
MA0043.1 | 1.25564 |
MA0046.1 | 1.1929 |
MA0048.1 | 0.266382 |
MA0050.1 | 0.731539 |
MA0051.1 | 0.856094 |
MA0052.1 | 1.17701 |
MA0055.1 | 0.125758 |
MA0056.1 | 0 |
MA0057.1 | 0.251896 |
MA0058.1 | 0.581673 |
MA0059.1 | 0.59559 |
MA0060.1 | 0.403071 |
MA0061.1 | 0.438628 |
MA0063.1 | 0 |
MA0066.1 | 0.834648 |
MA0067.1 | 1.50873 |
MA0068.1 | 0.256913 |
MA0069.1 | 1.17737 |
MA0070.1 | 1.16732 |
MA0071.1 | 0.73062 |
MA0072.1 | 1.15853 |
MA0073.1 | 0.00221226 |
MA0074.1 | 0.795862 |
MA0076.1 | 0.550092 |
MA0077.1 | 1.13603 |
MA0078.1 | 0.891476 |
MA0081.1 | 0.621611 |
MA0083.1 | 1.25482 |
MA0084.1 | 1.84013 |
MA0087.1 | 1.21037 |
MA0088.1 | 0.201215 |
MA0089.1 | 0 |
MA0090.1 | 2.65101 |
MA0091.1 | 0.703314 |
MA0092.1 | 0.651119 |
MA0093.1 | 0.519148 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 1.84237 |
MA0101.1 | 0.605676 |
MA0103.1 | 0.540576 |
MA0105.1 | 0.313353 |
MA0106.1 | 0.899777 |
MA0107.1 | 0.533522 |
MA0108.2 | 0.989014 |
MA0109.1 | 0 |
MA0111.1 | 1.60035 |
MA0113.1 | 0.869608 |
MA0114.1 | 0.43587 |
MA0115.1 | 1.25852 |
MA0116.1 | 0.497293 |
MA0117.1 | 1.22527 |
MA0119.1 | 0.606338 |
MA0122.1 | 1.24573 |
MA0124.1 | 1.45461 |
MA0125.1 | 1.37907 |
MA0130.1 | 0 |
MA0131.1 | 0.960068 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 1.29308 |
MA0136.1 | 0.817395 |
MA0139.1 | 0.365453 |
MA0140.1 | 0.78318 |
MA0141.1 | 0.563066 |
MA0142.1 | 1.04199 |
MA0143.1 | 0.887119 |
MA0144.1 | 0.439506 |
MA0145.1 | 0.21199 |
MA0146.1 | 0.0944145 |
MA0147.1 | 0.453952 |
MA0148.1 | 1.68395 |
MA0149.1 | 0.611881 |
MA0062.2 | 0.319836 |
MA0035.2 | 0.788288 |
MA0039.2 | 0.0959929 |
MA0138.2 | 0.951653 |
MA0002.2 | 0.368961 |
MA0137.2 | 0.559766 |
MA0104.2 | 0.386166 |
MA0047.2 | 0.845655 |
MA0112.2 | 0.211985 |
MA0065.2 | 0.212467 |
MA0150.1 | 0.67206 |
MA0151.1 | 0 |
MA0152.1 | 0.84577 |
MA0153.1 | 1.31015 |
MA0154.1 | 0.263609 |
MA0155.1 | 0.230016 |
MA0156.1 | 0.549102 |
MA0157.1 | 1.0083 |
MA0158.1 | 0 |
MA0159.1 | 0.465802 |
MA0160.1 | 0.71003 |
MA0161.1 | 0 |
MA0162.1 | 0.10667 |
MA0163.1 | 0.0996272 |
MA0164.1 | 0.817786 |
MA0080.2 | 0.534538 |
MA0018.2 | 0.828253 |
MA0099.2 | 0.944966 |
MA0079.2 | 0.00774881 |
MA0102.2 | 1.8929 |
MA0258.1 | 0.419871 |
MA0259.1 | 0.441366 |
MA0442.1 | 0 |