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MCL coexpression mm9:684: Difference between revisions

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{{MCL_coexpression_mm9
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T-complex;8.05972835473819e-12;12465,12462,12464,12461!GO:0051082;unfolded protein binding;4.86318037139402e-08;12465,12462,12464,12461!GO:0044445;cytosolic part;2.32295397199559e-07;12465,12462,12464,12461!GO:0006457;protein folding;6.46891643753644e-07;12465,12462,12464,12461!GO:0005829;cytosol;2.36143671966275e-05;12465,12462,12464,12461!GO:0005524;ATP binding;0.00245854689842092;12465,12462,12464,12461!GO:0032559;adenyl ribonucleotide binding;0.00245854689842092;12465,12462,12464,12461!GO:0044267;cellular protein metabolic process;0.00245854689842092;12465,12462,12464,55944,12461!GO:0044260;cellular macromolecule metabolic process;0.00245854689842092;12465,12462,12464,55944,12461!GO:0030554;adenyl nucleotide binding;0.00245854689842092;12465,12462,12464,12461!GO:0019538;protein metabolic process;0.00245854689842092;12465,12462,12464,55944,12461!GO:0032553;ribonucleotide binding;0.00349489910110125;12465,12462,12464,12461!GO:0032555;purine ribonucleotide 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|gostat_on_MCL_coexpression=GO:0005832;chaperonin-containing T-complex;8.05972835473819e-12;12465,12462,12464,12461!GO:0051082;unfolded protein binding;4.86318037139402e-08;12465,12462,12464,12461!GO:0044445;cytosolic part;2.32295397199559e-07;12465,12462,12464,12461!GO:0006457;protein folding;6.46891643753644e-07;12465,12462,12464,12461!GO:0005829;cytosol;2.36143671966275e-05;12465,12462,12464,12461!GO:0005524;ATP binding;0.00245854689842092;12465,12462,12464,12461!GO:0032559;adenyl ribonucleotide binding;0.00245854689842092;12465,12462,12464,12461!GO:0044267;cellular protein metabolic process;0.00245854689842092;12465,12462,12464,55944,12461!GO:0044260;cellular macromolecule metabolic process;0.00245854689842092;12465,12462,12464,55944,12461!GO:0030554;adenyl nucleotide binding;0.00245854689842092;12465,12462,12464,12461!GO:0019538;protein metabolic process;0.00245854689842092;12465,12462,12464,55944,12461!GO:0032553;ribonucleotide binding;0.00349489910110125;12465,12462,12464,12461!GO:0032555;purine ribonucleotide binding;0.00349489910110125;12465,12462,12464,12461!GO:0043234;protein complex;0.00349489910110125;12465,12462,12464,12461!GO:0017076;purine nucleotide binding;0.0037554488061163;12465,12462,12464,12461!GO:0007000;nucleolus organization and biogenesis;0.00437479430421456;64934!GO:0000166;nucleotide binding;0.00518423122245799;12465,12462,12464,12461!GO:0000089;mitotic metaphase;0.00518423122245799;64934!GO:0022613;ribonucleoprotein complex biogenesis and assembly;0.00581672890966684;64934,55944!GO:0032991;macromolecular complex;0.0059380503134956;12465,12462,12464,12461!GO:0051323;metaphase;0.00666361437877628;64934!GO:0006997;nuclear organization and biogenesis;0.0273469592557103;64934!GO:0044444;cytoplasmic part;0.0273469592557103;12465,12462,12464,12461!GO:0043170;macromolecule metabolic process;0.028407679656586;12465,12462,12464,55944,12461!GO:0006413;translational initiation;0.0392642313831404;55944!GO:0000793;condensed chromosome;0.0392642313831404;64934!GO:0044238;primary metabolic process;0.0481885656443548;12465,12462,12464,55944,12461!GO:0044237;cellular metabolic process;0.0481885656443548;12465,12462,12464,55944,12461!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=
}}

Latest revision as of 15:43, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:116500820..116500858,-p1@Cct2
Mm9::chr11:22890617..22890654,+p1@Cct4
Mm9::chr11:3863990..3864024,+p1@Pes1
Mm9::chr15:31531471..31531538,-p1@Cct5
Mm9::chr15:77801160..77801173,-p2@Eif3d
Mm9::chr15:77801180..77801254,-p1@Eif3d
Mm9::chr15:78905639..78905675,+p1@Eif3l
Mm9::chr3:88101037..88101066,+p2@Cct3
Mm9::chr3:88101069..88101115,+p1@Cct3
Mm9::chr4:138908232..138908261,-p2@Gm5633
p2@Gm9178
p2@Mrto4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005832chaperonin-containing T-complex8.05972835473819e-12
GO:0051082unfolded protein binding4.86318037139402e-08
GO:0044445cytosolic part2.32295397199559e-07
GO:0006457protein folding6.46891643753644e-07
GO:0005829cytosol2.36143671966275e-05
GO:0005524ATP binding0.00245854689842092
GO:0032559adenyl ribonucleotide binding0.00245854689842092
GO:0044267cellular protein metabolic process0.00245854689842092
GO:0044260cellular macromolecule metabolic process0.00245854689842092
GO:0030554adenyl nucleotide binding0.00245854689842092
GO:0019538protein metabolic process0.00245854689842092
GO:0032553ribonucleotide binding0.00349489910110125
GO:0032555purine ribonucleotide binding0.00349489910110125
GO:0043234protein complex0.00349489910110125
GO:0017076purine nucleotide binding0.0037554488061163
GO:0007000nucleolus organization and biogenesis0.00437479430421456
GO:0000166nucleotide binding0.00518423122245799
GO:0000089mitotic metaphase0.00518423122245799
GO:0022613ribonucleoprotein complex biogenesis and assembly0.00581672890966684
GO:0032991macromolecular complex0.0059380503134956
GO:0051323metaphase0.00666361437877628
GO:0006997nuclear organization and biogenesis0.0273469592557103
GO:0044444cytoplasmic part0.0273469592557103
GO:0043170macromolecule metabolic process0.028407679656586
GO:0006413translational initiation0.0392642313831404
GO:0000793condensed chromosome0.0392642313831404
GO:0044238primary metabolic process0.0481885656443548
GO:0044237cellular metabolic process0.0481885656443548



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.347165
MA0004.10.946922
MA0006.11.13936
MA0007.10.346734
MA0009.10.780842
MA0014.10.544988
MA0017.10.233089
MA0019.10.603066
MA0024.12.92806
MA0025.11.01089
MA0027.12.42079
MA0028.11.83149
MA0029.10.716673
MA0030.10.723093
MA0031.10.688336
MA0038.10.496338
MA0040.10.79313
MA0041.10.291712
MA0042.10.279998
MA0043.10.875991
MA0046.10.816137
MA0048.10.066679
MA0050.10.396459
MA0051.10.504875
MA0052.10.801048
MA0055.10.0139872
MA0056.10
MA0057.10.471918
MA0058.10.273976
MA0059.10.28489
MA0060.10.8754
MA0061.10.504772
MA0063.10
MA0066.10.485868
MA0067.11.12095
MA0068.10.836551
MA0069.10.801381
MA0070.10.791856
MA0071.10.395679
MA0072.10.783532
MA0073.10.0100778
MA0074.10.451832
MA0076.11.99258
MA0077.10.762273
MA0078.10.536502
MA0081.10.824359
MA0083.10.875209
MA0084.11.44691
MA0087.10.832758
MA0088.11.86507
MA0089.10
MA0090.10.329158
MA0091.10.372635
MA0092.10.877917
MA0093.10.226349
MA0095.10
MA0098.10
MA0100.10.440912
MA0101.10.795627
MA0103.10.242398
MA0105.10.304995
MA0106.10.543967
MA0107.10.237082
MA0108.20.625209
MA0109.10
MA0111.10.342068
MA0113.10.516916
MA0114.10.167085
MA0115.10.878749
MA0116.10.604438
MA0117.10.846964
MA0119.10.293392
MA0122.10.866511
MA0124.11.06819
MA0125.10.994853
MA0130.10
MA0131.10.598671
MA0132.10
MA0133.10
MA0135.10.911905
MA0136.11.18666
MA0139.10.385513
MA0140.10.440804
MA0141.10.259554
MA0142.10.674191
MA0143.10.53259
MA0144.10.169559
MA0145.10.664015
MA0146.10.00739145
MA0147.11.6106
MA0148.10.375491
MA0149.10.2978
MA0062.22.18244
MA0035.20.44524
MA0039.20.857069
MA0138.20.590987
MA0002.20.123715
MA0137.20.257017
MA0104.21.9417
MA0047.20.495607
MA0112.20.371983
MA0065.20.0424448
MA0150.10.346631
MA0151.10
MA0152.10.495709
MA0153.10.92832
MA0154.10.0653255
MA0155.10.186607
MA0156.11.28579
MA0157.10.642984
MA0158.10
MA0159.10.550545
MA0160.10.378276
MA0161.10
MA0162.10.134999
MA0163.10.439212
MA0164.10.471016
MA0080.20.669221
MA0018.20.480226
MA0099.20.584892
MA0079.20.0983396
MA0102.21.49914
MA0258.10.156336
MA0259.10.981631
MA0442.10
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