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MCL coexpression mm9:431: Difference between revisions

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{{MCL_coexpression_mm9
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|tfbs_overrepresentation_for_novel_motifs=0.162057,0.380762,0.144778,0.558894,0.271545,1.10473,0.270195,0.146885,0.361988,0.115943,0.236307,0.722367,0.340991,0.766078,0.615754,0,0.44163,0.552297,0.0320188,0.278706,0.385752,0.0267127,0.279154,1.98137,0.149704,0.301898,0.289597,0.620162,0.103721,0.648885,0.595646,0.531719,0.257084,0.0235517,0.0880674,0.636026,0.0693463,0.257981,0.468707,0.706467,0.56228,0.210373,0.15533,1.03977,0.0330709,0.183361,0.372907,0.228683,0.222853,0.343195,0.426383,0.323798,0.190678,0.661847,0.67813,0.28555,1.18914,0.25091,0.27058,0.283926,0.513661,0.331566,0.69092,0.4166,0.294453,0.451957,0.806865,1.14503,0.509463,1.00145,0.132733,0.353861,0.809605,0.709559,0.105151,0.234413,0.468707,0.363297,0.498264,0.124234,0.3566,0.456892,0.330377,0.326128,0.602212,0.000691814,0.244557,0.0175925,0.377064,1.30447,0.873554,0.606796,0.543309,0.280055,0.209139,0.416353,0.0362583,0.545856,0.373124,0.553251,0.523231,0.531465,0.645628,0.4269,0.425983,0.21005,0.478524,0.225669,0.127231,0.122746,0.157325,0.647285,0.124928,0.240232,0.880323,0.945975,0.00145901,0.193921,0.442771,1.84131,0.714636,1.81953,0.303371,0.951399,0.932468,0.501574,0.276618,0.53717,0.805419,0.59554,0.629874,0.546435,0.777296,1.46093,0.9011,0.0789988,0.501821,0.607069,0.853868,1.66928,1.27308,0.811357,0.313144,0.541193,0.420352,1.78485,0.375553,1.62988,0.505775,0.0799646,0.0818785,0.461871,0.66331,0.0522757,0.29573,0.739975,0.324625,0.0943424,1.49971,0.167568,0.862985,1.46415,0.501973,0.15582,1.07177,0.289792,0.242542,0.719527,0.00143647
}}

Latest revision as of 15:17, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr2:164603706..164603728,-p@chr2:164603706..164603728
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Mm9::chr2:52024640..52024661,-p@chr2:52024640..52024661
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Mm9::chr2:52025441..52025470,-p@chr2:52025441..52025470
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Mm9::chr2:52044257..52044281,-p@chr2:52044257..52044281
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Mm9::chr2:52061205..52061216,-p@chr2:52061205..52061216
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Mm9::chr2:52126649..52126663,-p@chr2:52126649..52126663
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Mm9::chr2:52146678..52146689,-p@chr2:52146678..52146689
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Mm9::chr2:52148383..52148405,-p@chr2:52148383..52148405
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Mm9::chr2:52175183..52175194,-p@chr2:52175183..52175194
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Mm9::chr2:76686954..76686965,-p@chr2:76686954..76686965
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Mm9::chr2:76687007..76687019,-p@chr2:76687007..76687019
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Mm9::chr2:76687063..76687074,-p@chr2:76687063..76687074
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Mm9::chr2:76691701..76691712,-p@chr2:76691701..76691712
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Mm9::chr2:76695239..76695257,-p@chr2:76695239..76695257
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Mm9::chr2:76724428..76724433,-p@chr2:76724428..76724433
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Mm9::chr3:97559413..97559417,-p@chr3:97559413..97559417
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Mm9::chr4:43532533..43532590,-p3@Tpm2
Mm9::chr4:43535599..43535622,-p@chr4:43535599..43535622
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.00154554
MA0004.10.559722
MA0006.10.0854592
MA0007.10.181021
MA0009.10.5557
MA0014.10.00134458
MA0017.11.11747
MA0019.11.02123
MA0024.10.516087
MA0025.10.773017
MA0027.12.16618
MA0028.10.0910441
MA0029.10.496599
MA0030.10.502474
MA0031.10.470779
MA0038.10.301835
MA0040.10.567108
MA0041.10.140298
MA0042.10.131965
MA0043.10.644695
MA0046.10.58854
MA0048.10.0629374
MA0050.10.219748
MA0051.11.50631
MA0052.10.574473
MA0055.10.0620752
MA0056.10
MA0057.10.0539481
MA0058.10.401421
MA0059.10.421089
MA0060.10.0476793
MA0061.10.476726
MA0063.10
MA0066.10.293002
MA0067.10.879099
MA0068.10.0116947
MA0069.10.574784
MA0070.10.565924
MA0071.10.219128
MA0072.10.558195
MA0073.11.6317e-06
MA0074.10.264633
MA0076.10.110983
MA0077.10.538513
MA0078.10.336143
MA0081.11.4396
MA0083.10.643958
MA0084.11.1979
MA0087.10.604077
MA0088.10.00502864
MA0089.10
MA0090.10.167748
MA0091.10.200988
MA0092.10.167962
MA0093.10.653128
MA0095.10
MA0098.10
MA0100.10.255651
MA0101.10.141127
MA0103.10.345124
MA0105.10.239813
MA0106.10.342589
MA0107.10.335745
MA0108.21.06413
MA0109.10
MA0111.10.177475
MA0113.11.543
MA0114.11.23875
MA0115.11.56023
MA0116.10.08535
MA0117.10.617392
MA0119.10.141504
MA0122.10.635764
MA0124.10.828115
MA0125.10.757653
MA0130.10
MA0131.10.390422
MA0132.10
MA0133.10
MA0135.10.67864
MA0136.10.280269
MA0139.10.0357525
MA0140.10.710317
MA0141.10.37559
MA0142.10.457961
MA0143.10.332773
MA0144.10.0609575
MA0145.10.208013
MA0146.10.0100022
MA0147.10.236435
MA0148.10.203219
MA0149.10.444477
MA0062.20.0237736
MA0035.20.259203
MA0039.20.000301019
MA0138.20.383644
MA0002.20.338271
MA0137.20.116005
MA0104.20.162663
MA0047.20.301217
MA0112.20.0329313
MA0065.20.372253
MA0150.10.180943
MA0151.10
MA0152.10.814717
MA0153.10.694211
MA0154.10.0611613
MA0155.10.246884
MA0156.10.110475
MA0157.10.429861
MA0158.10
MA0159.10.250417
MA0160.10.592791
MA0161.10
MA0162.10.000456116
MA0163.10.000347337
MA0164.10.280556
MA0080.20.337091
MA0018.20.288261
MA0099.20.37828
MA0079.22.73242e-13
MA0102.21.24942
MA0258.10.0535937
MA0259.10.221921
MA0442.10
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