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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0035107;appendage morphogenesis;0.0495393326676861;11695,232174!GO:0035108;limb morphogenesis;0.0495393326676861;11695,232174!GO:0060173;limb development;0.0495393326676861;11695,232174!GO:0048736;appendage development;0.0495393326676861;11695,232174!GO:0032502;developmental process;0.0495393326676861;12015,11695,18007,20204,232174,56699!GO:0004938;alpha2-adrenergic receptor activity;0.0495393326676861;11551!GO:0048856;anatomical structure development;0.0495393326676861;12015,11695,18007,232174,56699!GO:0004500;dopamine beta-monooxygenase activity;0.0495393326676861;59012!GO:0048384;retinoic acid receptor signaling pathway;0.0495393326676861;232174!GO:0016715;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen;0.0495393326676861;59012!GO:0045579;positive regulation of B cell differentiation;0.0495393326676861;12015!GO:0045296;cadherin binding;0.0495393326676861;18007!GO:0050839;cell adhesion molecule binding;0.0495393326676861;18007!GO:0003002;regionalization;0.0495393326676861;11695,232174!GO:0007275;multicellular organismal development;0.0495393326676861;12015,11695,18007,20204,232174!GO:0004936;alpha-adrenergic receptor activity;0.0495393326676861;11551!GO:0007517;muscle development;0.0495393326676861;11695,18007!GO:0000768;syncytium formation by plasma membrane fusion;0.0495393326676861;18007!GO:0007520;myoblast fusion;0.0495393326676861;18007!GO:0014902;myotube differentiation;0.0495393326676861;18007!GO:0008191;metalloendopeptidase inhibitor activity;0.0495393326676861;278507!GO:0006949;syncytium formation;0.0495393326676861;18007!GO:0042573;retinoic acid metabolic process;0.0495393326676861;232174!GO:0045577;regulation of B cell differentiation;0.0495393326676861;12015!GO:0006548;histidine catabolic process;0.0495393326676861;59012!GO:0007140;male meiosis;0.0495393326676861;232174!GO:0009077;histidine family amino acid catabolic process;0.0495393326676861;59012!GO:0050789;regulation of biological process;0.0495393326676861;12015,11695,18007,20204,17965,56699!GO:0009954;proximal/distal pattern formation;0.0495393326676861;232174!GO:0006547;histidine metabolic process;0.0495393326676861;59012!GO:0009075;histidine family amino acid metabolic process;0.0495393326676861;59012!GO:0005021;vascular endothelial growth factor receptor activity;0.0495393326676861;18007!}}
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adhesion molecule binding;0.0495393326676861;18007!GO:0003002;regionalization;0.0495393326676861;11695,232174!GO:0007275;multicellular organismal development;0.0495393326676861;12015,11695,18007,20204,232174!GO:0004936;alpha-adrenergic receptor activity;0.0495393326676861;11551!GO:0007517;muscle development;0.0495393326676861;11695,18007!GO:0000768;syncytium formation by plasma membrane fusion;0.0495393326676861;18007!GO:0007520;myoblast fusion;0.0495393326676861;18007!GO:0014902;myotube differentiation;0.0495393326676861;18007!GO:0008191;metalloendopeptidase inhibitor activity;0.0495393326676861;278507!GO:0006949;syncytium formation;0.0495393326676861;18007!GO:0042573;retinoic acid metabolic process;0.0495393326676861;232174!GO:0045577;regulation of B cell differentiation;0.0495393326676861;12015!GO:0006548;histidine catabolic process;0.0495393326676861;59012!GO:0007140;male meiosis;0.0495393326676861;232174!GO:0009077;histidine family amino acid catabolic process;0.0495393326676861;59012!GO:0050789;regulation of biological process;0.0495393326676861;12015,11695,18007,20204,17965,56699!GO:0009954;proximal/distal pattern formation;0.0495393326676861;232174!GO:0006547;histidine metabolic process;0.0495393326676861;59012!GO:0009075;histidine family amino acid metabolic process;0.0495393326676861;59012!GO:0005021;vascular endothelial growth factor receptor activity;0.0495393326676861;18007!|ontology_enrichment_celltype=CL:0002453!4.49e-08!8|ontology_enrichment_disease=|ontology_enrichment_uberon=|tfbs_overrepresentation_for_novel_motifs=2.48816,2.19029,0.479262,0.0912674,0.0248591,0.666391,0.148388,0.115588,0.455649,0.838607,0.779211,0.435892,0.242781,0.155782,0.288144,0,0.785262,0.0992523,2.34593,0.136186,0.0473293,0.0303668,0.917251,0.255788,0.495614,0.514394,0.193923,0.109159,1.85176,1.08608,0.333765,0.367297,0.455792,0.157123,0.533394,1.86796,0.430294,0.849202,0.19064,0.512008,0.102492,0.340818,0.110058,0.122302,1.32464,1.01862,1.89025,1.80006,0.21866,0.625994,0.755487,0.190239,0.536864,0.485586,0.500658,0.483088,0.365068,0.13388,0.51474,0.158905,0.926415,0.196469,0.290657,1.35287,0.500124,0.297204,0.621417,0.947606,0.347523,0.807939,1.17282,0.255354,0.984329,0.529888,2.4933,0.440677,0.47031,0.632797,0.337634,0.0488158,0.0443708,0.301475,0.195512,0.402298,0.430864,1.98614,0.0145099,0.810034,0.233678,1.10402,0.684894,0.435043,0.377655,0.110957,2.1068,0.158698,0.236902,0.379937,0.23041,0.0871454,0.0900436,0.367072,0.470627,0.756497,0.274889,0.10429,0.857465,0.369494,2.11885,1.10275,0.242899,0.472153,0.049218,0.396939,0.691366,0.248416,4.05083,0.0930994,0.28928,0.0871017,0.534627,0.251614,0.174046,0.221668,0.741383,0.902678,5.27725,0.372164,0.620047,1.18297,0.456151,0.295631,0.593454,0.972702,0.711262,0.220498,0.0756323,1.15327,0.6661,1.46501,1.07314,0.625675,1.0259,0.375761,0.270089,0.104751,0.232424,1.42588,0.560633,1.14513,1.42583,2.9773,0.486938,0.559278,0.168063,0.558342,0.1909,0.13155,2.47117,0.554693,0.674799,0.430147,0.340904,0.883434,0.26765,0.163443,2.33447,0.140344,1.44738|tfbs_overrepresentation_jaspar=MA0003.1;2.86201,MA0004.1;0.0915017,MA0006.1;0.280185,MA0007.1;1.00725,MA0009.1;0.388771,MA0014.1;2.46315,MA0017.1;0.329305,MA0019.1;0.248074,MA0024.1;0.353393,MA0025.1;0.589418,MA0027.1;1.95996,MA0028.1;0.549468,MA0029.1;0.336166,MA0030.1;0.341346,MA0031.1;0.313542,MA0038.1;0.17284,MA0040.1;0.399043,MA0041.1;2.26059,MA0042.1;1.63919,MA0043.1;0.469769,MA0046.1;0.418434,MA0048.1;1.87427,MA0050.1;0.111159,MA0051.1;0.178537,MA0052.1;0.405693,MA0055.1;0.679085,MA0056.1;0,MA0057.1;2.88831,MA0058.1;0.189695,MA0059.1;1.66994,MA0060.1;0.056085,MA0061.1;0.380864,MA0063.1;0,MA0066.1;0.165937,MA0067.1;0.690195,MA0068.1;0.0786082,MA0069.1;0.405974,MA0070.1;0.397975,MA0071.1;0.110717,MA0072.1;0.391015,MA0073.1;0.703623,MA0074.1;0.443199,MA0076.1;0.0413193,MA0077.1;0.373365,MA0078.1;0.200156,MA0081.1;0.856045,MA0083.1;0.469091,MA0084.1;0.999346,MA0087.1;0.432564,MA0088.1;2.50608,MA0089.1;0,MA0090.1;0.555288,MA0091.1;0.0979655,MA0092.1;0.262306,MA0093.1;0.0330762,MA0095.1;0,MA0098.1;0,MA0100.1;0.137416,MA0101.1;0.809895,MA0103.1;0.350053,MA0105.1;0.277094,MA0106.1;0.205373,MA0107.1;0.957408,MA0108.2;0.731286,MA0109.1;0,MA0111.1;1.47406,MA0113.1;1.65139,MA0114.1;0.192056,MA0115.1;0.472164,MA0116.1;0.518649,MA0117.1;0.44472,MA0119.1;0.059082,MA0122.1;0.461557,MA0124.1;0.641584,MA0125.1;0.574947,MA0130.1;0,MA0131.1;0.244817,MA0132.1;0,MA0133.1;0,MA0135.1;0.501131,MA0136.1;0.156089,MA0139.1;0.92028,MA0140.1;0.13735,MA0141.1;0.17205,MA0142.1;0.302401,MA0143.1;0.197439,MA0144.1;1.30677,MA0145.1;0.087554,MA0146.1;0.520811,MA0147.1;0.415293,MA0148.1;0.0995133,MA0149.1;2.3072,MA0062.2;0.00387198,MA0035.2;0.140079,MA0039.2;0.806238,MA0138.2;0.239154,MA0002.2;0.114411,MA0137.2;0.383209,MA0104.2;0.469212,MA0047.2;0.172355,MA0112.2;2.68067,MA0065.2;0.591782,MA0150.1;0.0843224,MA0151.1;0,MA0152.1;0.172422,MA0153.1;0.515592,MA0154.1;0.663509,MA0155.1;0.113555,MA0156.1;0.0410387,MA0157.1;0.278203,MA0158.1;0,MA0159.1;0.442699,MA0160.1;0.101031,MA0161.1;0,MA0162.1;0.824796,MA0163.1;0.31967,MA0164.1;0.473545,MA0080.2;0.0370406,MA0018.2;0.488272,MA0099.2;0.234689,MA0079.2;5.29247,MA0102.2;1.04989,MA0258.1;0.570617,MA0259.1;0.386929,MA0442.1;0}}

Latest revision as of 15:02, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:23943345..23943407,+p1@Moxd1
Mm9::chr11:113612623..113612641,-p5@Cdc42ep4
Mm9::chr11:113613098..113613120,-p1@Cdc42ep4
Mm9::chr11:45940767..45940771,+p@chr11:45940767..45940771
+
Mm9::chr11:94104253..94104270,-p3@Wfikkn2
Mm9::chr13:99124757..99124764,+p@chr13:99124757..99124764
+
Mm9::chr16:30599803..30599820,+p1@Fam43a
Mm9::chr19:54120233..54120243,+p4@Adra2a
Mm9::chr19:6532264..6532286,-p4@ENSMUST00000149574
Mm9::chr19:7025211..7025226,+p8@Bad
Mm9::chr2:163317341..163317353,+p@chr2:163317341..163317353
+
Mm9::chr2:30701003..30701028,+p6@Prrx2
Mm9::chr2:93482426..93482434,+p3@Alx4
Mm9::chr2:93482464..93482491,+p1@Alx4
Mm9::chr4:138641482..138641515,-p@chr4:138641482..138641515
-
Mm9::chr4:138648873..138648892,-p1@Nbl1
Mm9::chr4:138648925..138648936,-p2@Nbl1
Mm9::chr6:84537931..84537980,-p@chr6:84537931..84537980
-
Mm9::chr6:84537985..84538004,-p@chr6:84537985..84538004
-
Mm9::chr6:84538594..84538603,-p6@Cyp26b1
Mm9::chr6:84538625..84538639,-p2@Cyp26b1
Mm9::chr6:84538689..84538700,-p5@Cyp26b1
Mm9::chr6:84538957..84538977,-p1@Cyp26b1
Mm9::chr8:113329722..113329748,-p3@Il34
Mm9::chr8:113329763..113329852,-p1@Il34
Mm9::chr9:43915755..43915801,+p@chr9:43915755..43915801
+
Mm9::chr9:57385390..57385441,+p1@2310046O06Rik
Mm9::chr9:57389282..57389286,+p@chr9:57389282..57389286
+
Mm9::chr9:58884009..58884028,-p2@Neo1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0035107appendage morphogenesis0.0495393326676861
GO:0035108limb morphogenesis0.0495393326676861
GO:0060173limb development0.0495393326676861
GO:0048736appendage development0.0495393326676861
GO:0032502developmental process0.0495393326676861
GO:0004938alpha2-adrenergic receptor activity0.0495393326676861
GO:0048856anatomical structure development0.0495393326676861
GO:0004500dopamine beta-monooxygenase activity0.0495393326676861
GO:0048384retinoic acid receptor signaling pathway0.0495393326676861
GO:0016715oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen0.0495393326676861
GO:0045579positive regulation of B cell differentiation0.0495393326676861
GO:0045296cadherin binding0.0495393326676861
GO:0050839cell adhesion molecule binding0.0495393326676861
GO:0003002regionalization0.0495393326676861
GO:0007275multicellular organismal development0.0495393326676861
GO:0004936alpha-adrenergic receptor activity0.0495393326676861
GO:0007517muscle development0.0495393326676861
GO:0000768syncytium formation by plasma membrane fusion0.0495393326676861
GO:0007520myoblast fusion0.0495393326676861
GO:0014902myotube differentiation0.0495393326676861
GO:0008191metalloendopeptidase inhibitor activity0.0495393326676861
GO:0006949syncytium formation0.0495393326676861
GO:0042573retinoic acid metabolic process0.0495393326676861
GO:0045577regulation of B cell differentiation0.0495393326676861
GO:0006548histidine catabolic process0.0495393326676861
GO:0007140male meiosis0.0495393326676861
GO:0009077histidine family amino acid catabolic process0.0495393326676861
GO:0050789regulation of biological process0.0495393326676861
GO:0009954proximal/distal pattern formation0.0495393326676861
GO:0006547histidine metabolic process0.0495393326676861
GO:0009075histidine family amino acid metabolic process0.0495393326676861
GO:0005021vascular endothelial growth factor receptor activity0.0495393326676861



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br><br><br>

Cell Type
Ontology termp-valuen
oligodendrocyte precursor cell4.49e-088


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.12.86201
MA0004.10.0915017
MA0006.10.280185
MA0007.11.00725
MA0009.10.388771
MA0014.12.46315
MA0017.10.329305
MA0019.10.248074
MA0024.10.353393
MA0025.10.589418
MA0027.11.95996
MA0028.10.549468
MA0029.10.336166
MA0030.10.341346
MA0031.10.313542
MA0038.10.17284
MA0040.10.399043
MA0041.12.26059
MA0042.11.63919
MA0043.10.469769
MA0046.10.418434
MA0048.11.87427
MA0050.10.111159
MA0051.10.178537
MA0052.10.405693
MA0055.10.679085
MA0056.10
MA0057.12.88831
MA0058.10.189695
MA0059.11.66994
MA0060.10.056085
MA0061.10.380864
MA0063.10
MA0066.10.165937
MA0067.10.690195
MA0068.10.0786082
MA0069.10.405974
MA0070.10.397975
MA0071.10.110717
MA0072.10.391015
MA0073.10.703623
MA0074.10.443199
MA0076.10.0413193
MA0077.10.373365
MA0078.10.200156
MA0081.10.856045
MA0083.10.469091
MA0084.10.999346
MA0087.10.432564
MA0088.12.50608
MA0089.10
MA0090.10.555288
MA0091.10.0979655
MA0092.10.262306
MA0093.10.0330762
MA0095.10
MA0098.10
MA0100.10.137416
MA0101.10.809895
MA0103.10.350053
MA0105.10.277094
MA0106.10.205373
MA0107.10.957408
MA0108.20.731286
MA0109.10
MA0111.11.47406
MA0113.11.65139
MA0114.10.192056
MA0115.10.472164
MA0116.10.518649
MA0117.10.44472
MA0119.10.059082
MA0122.10.461557
MA0124.10.641584
MA0125.10.574947
MA0130.10
MA0131.10.244817
MA0132.10
MA0133.10
MA0135.10.501131
MA0136.10.156089
MA0139.10.92028
MA0140.10.13735
MA0141.10.17205
MA0142.10.302401
MA0143.10.197439
MA0144.11.30677
MA0145.10.087554
MA0146.10.520811
MA0147.10.415293
MA0148.10.0995133
MA0149.12.3072
MA0062.20.00387198
MA0035.20.140079
MA0039.20.806238
MA0138.20.239154
MA0002.20.114411
MA0137.20.383209
MA0104.20.469212
MA0047.20.172355
MA0112.22.68067
MA0065.20.591782
MA0150.10.0843224
MA0151.10
MA0152.10.172422
MA0153.10.515592
MA0154.10.663509
MA0155.10.113555
MA0156.10.0410387
MA0157.10.278203
MA0158.10
MA0159.10.442699
MA0160.10.101031
MA0161.10
MA0162.10.824796
MA0163.10.31967
MA0164.10.473545
MA0080.20.0370406
MA0018.20.488272
MA0099.20.234689
MA0079.25.29247
MA0102.21.04989
MA0258.10.570617
MA0259.10.386929
MA0442.10
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