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MCL coexpression mm9:103: Difference between revisions

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{{MCL_coexpression_mm9
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matrix structural constituent conferring tensile strength;0.000256868543843512;12842,12843!GO:0005581;collagen;0.000256868543843512;12842,12843!GO:0005201;extracellular matrix structural constituent;0.000476698904675318;12842,12843!GO:0006817;phosphate transport;0.000476698904675318;12842,12843!GO:0044420;extracellular matrix part;0.000721351438663609;12842,12843!GO:0015698;inorganic anion transport;0.00139480863477384;12842,12843!GO:0006820;anion transport;0.00168113383247393;12842,12843!GO:0004287;prolyl oligopeptidase activity;0.00368729276955042;14089!GO:0005578;proteinaceous extracellular matrix;0.00368729276955042;12842,12843!GO:0004274;dipeptidyl-peptidase IV activity;0.00552056467053565;14089!GO:0008239;dipeptidyl-peptidase activity;0.00788436042515823;14089!GO:0016806;dipeptidyl-peptidase and tripeptidyl-peptidase activity;0.00788436042515823;14089!GO:0022610;biological adhesion;0.0104281690955106;12842,12843!GO:0007155;cell adhesion;0.0104281690955106;12842,12843!GO:0006811;ion transport;0.0134314950248656;12842,12843!GO:0008238;exopeptidase 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|gostat_on_MCL_coexpression=GO:0030020;extracellular matrix structural constituent conferring tensile strength;0.000256868543843512;12842,12843!GO:0005581;collagen;0.000256868543843512;12842,12843!GO:0005201;extracellular matrix structural constituent;0.000476698904675318;12842,12843!GO:0006817;phosphate transport;0.000476698904675318;12842,12843!GO:0044420;extracellular matrix part;0.000721351438663609;12842,12843!GO:0015698;inorganic anion transport;0.00139480863477384;12842,12843!GO:0006820;anion transport;0.00168113383247393;12842,12843!GO:0004287;prolyl oligopeptidase activity;0.00368729276955042;14089!GO:0005578;proteinaceous extracellular matrix;0.00368729276955042;12842,12843!GO:0004274;dipeptidyl-peptidase IV activity;0.00552056467053565;14089!GO:0008239;dipeptidyl-peptidase activity;0.00788436042515823;14089!GO:0016806;dipeptidyl-peptidase and tripeptidyl-peptidase activity;0.00788436042515823;14089!GO:0022610;biological adhesion;0.0104281690955106;12842,12843!GO:0007155;cell adhesion;0.0104281690955106;12842,12843!GO:0006811;ion transport;0.0134314950248656;12842,12843!GO:0008238;exopeptidase activity;0.0461127810323622;14089!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=
}}

Latest revision as of 14:42, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:55208064..55208101,-p@chr11:55208064..55208101
-
Mm9::chr11:55208228..55208240,-p@chr11:55208228..55208240
-
Mm9::chr11:55208247..55208258,-p@chr11:55208247..55208258
-
Mm9::chr11:94797560..94797574,+p1@Col1a1
Mm9::chr11:94799217..94799260,+p@chr11:94799217..94799260
+
Mm9::chr11:94799266..94799369,+p@chr11:94799266..94799369
+
Mm9::chr11:94799291..94799302,-p@chr11:94799291..94799302
-
Mm9::chr11:94799344..94799407,-p@chr11:94799344..94799407
-
Mm9::chr11:94799378..94799392,+p@chr11:94799378..94799392
+
Mm9::chr11:94799563..94799574,-p@chr11:94799563..94799574
-
Mm9::chr11:94799813..94799852,+p3@Col1a1
Mm9::chr11:94799879..94799901,+p4@Col1a1
Mm9::chr11:94800697..94800744,+p5@Col1a1
Mm9::chr11:94801006..94801032,+p@chr11:94801006..94801032
+
Mm9::chr11:94801214..94801242,+p@chr11:94801214..94801242
+
Mm9::chr11:94803319..94803361,+p@chr11:94803319..94803361
+
Mm9::chr11:94803693..94803724,+p@chr11:94803693..94803724
+
Mm9::chr11:94804105..94804136,+p@chr11:94804105..94804136
+
Mm9::chr11:94804150..94804191,-p@chr11:94804150..94804191
-
Mm9::chr11:94805034..94805050,+p@chr11:94805034..94805050
+
Mm9::chr11:94805053..94805091,+p@chr11:94805053..94805091
+
Mm9::chr11:94805665..94805699,+p@chr11:94805665..94805699
+
Mm9::chr11:94805939..94805955,-p@chr11:94805939..94805955
-
Mm9::chr11:94806060..94806096,+p@chr11:94806060..94806096
+
Mm9::chr11:94806219..94806250,+p6@Col1a1
Mm9::chr11:94806676..94806701,+p7@Col1a1
Mm9::chr11:94806873..94806893,+p@chr11:94806873..94806893
+
Mm9::chr11:94807117..94807146,+p@chr11:94807117..94807146
+
Mm9::chr11:94808083..94808118,+p@chr11:94808083..94808118
+
Mm9::chr11:94808423..94808459,+p@chr11:94808423..94808459
+
Mm9::chr11:94808944..94808949,+p@chr11:94808944..94808949
+
Mm9::chr11:94808975..94808987,+p@chr11:94808975..94808987
+
Mm9::chr11:94809019..94809051,+p@chr11:94809019..94809051
+
Mm9::chr11:94809191..94809214,+p@chr11:94809191..94809214
+
Mm9::chr11:94809219..94809256,+p@chr11:94809219..94809256
+
Mm9::chr11:94809677..94809702,+p@chr11:94809677..94809702
+
Mm9::chr11:94810027..94810047,+p@chr11:94810027..94810047
+
Mm9::chr11:94810048..94810099,+p@chr11:94810048..94810099
+
Mm9::chr11:94810684..94810748,+p@chr11:94810684..94810748
+
Mm9::chr11:94811404..94811488,+p@chr11:94811404..94811488
+
Mm9::chr11:94811600..94811621,+p@chr11:94811600..94811621
+
Mm9::chr11:94811624..94811643,+p@chr11:94811624..94811643
+
Mm9::chr11:94811649..94811669,+p@chr11:94811649..94811669
+
Mm9::chr11:94811702..94811748,+p@chr11:94811702..94811748
+
Mm9::chr11:94811752..94811776,+p@chr11:94811752..94811776
+
Mm9::chr11:94811786..94811789,+p@chr11:94811786..94811789
+
Mm9::chr11:94811795..94811810,+p@chr11:94811795..94811810
+
Mm9::chr11:94811811..94811864,+p@chr11:94811811..94811864
+
Mm9::chr11:94812017..94812058,+p@chr11:94812017..94812058
+
Mm9::chr11:94812063..94812152,+p@chr11:94812063..94812152
+
Mm9::chr11:94812156..94812212,-p@chr11:94812156..94812212
-
Mm9::chr11:94812163..94812170,+p@chr11:94812163..94812170
+
Mm9::chr11:94812175..94812179,+p@chr11:94812175..94812179
+
Mm9::chr11:94812185..94812190,+p@chr11:94812185..94812190
+
Mm9::chr11:94812419..94812464,+p@chr11:94812419..94812464
+
Mm9::chr11:94812471..94812485,+p@chr11:94812471..94812485
+
Mm9::chr11:94812488..94812542,+p@chr11:94812488..94812542
+
Mm9::chr11:94812525..94812571,-p@chr11:94812525..94812571
-
Mm9::chr11:94812543..94812554,+p@chr11:94812543..94812554
+
Mm9::chr11:94812557..94812568,+p@chr11:94812557..94812568
+
Mm9::chr11:94812603..94812638,+p@chr11:94812603..94812638
+
Mm9::chr11:94812610..94812635,-p@chr11:94812610..94812635
-
Mm9::chr11:94812775..94812791,+p@chr11:94812775..94812791
+
Mm9::chr11:94812800..94812851,+p@chr11:94812800..94812851
+
Mm9::chr11:94812823..94812851,-p@chr11:94812823..94812851
-
Mm9::chr11:94812856..94812891,-p@chr11:94812856..94812891
-
Mm9::chr11:94812869..94812881,+p@chr11:94812869..94812881
+
Mm9::chr11:94812891..94812914,+p@chr11:94812891..94812914
+
Mm9::chr11:94812895..94812904,-p@chr11:94812895..94812904
-
Mm9::chr11:94812907..94812964,-p@chr11:94812907..94812964
-
Mm9::chr11:94812918..94812938,+p@chr11:94812918..94812938
+
Mm9::chr11:94812940..94812978,+p@chr11:94812940..94812978
+
Mm9::chr11:94812967..94812984,-p@chr11:94812967..94812984
-
Mm9::chr11:94812998..94813021,-p@chr11:94812998..94813021
-
Mm9::chr11:94813027..94813034,+p@chr11:94813027..94813034
+
Mm9::chr11:94813036..94813049,+p@chr11:94813036..94813049
+
Mm9::chr11:94813074..94813146,+p@chr11:94813074..94813146
+
Mm9::chr11:94813222..94813253,+p@chr11:94813222..94813253
+
Mm9::chr11:94813259..94813287,+p@chr11:94813259..94813287
+
Mm9::chr11:94813317..94813331,+p@chr11:94813317..94813331
+
Mm9::chr11:94813336..94813355,+p@chr11:94813336..94813355
+
Mm9::chr11:94813369..94813378,+p@chr11:94813369..94813378
+
Mm9::chr11:94813407..94813412,+p@chr11:94813407..94813412
+
Mm9::chr11:94813435..94813446,+p@chr11:94813435..94813446
+
Mm9::chr11:94813455..94813466,+p@chr11:94813455..94813466
+
Mm9::chr11:94813579..94813586,+p@chr11:94813579..94813586
+
Mm9::chr11:94813591..94813600,+p@chr11:94813591..94813600
+
Mm9::chr11:94813605..94813619,+p@chr11:94813605..94813619
+
Mm9::chr11:94813669..94813683,+p@chr11:94813669..94813683
+
Mm9::chr11:94813770..94813788,+p@chr11:94813770..94813788
+
Mm9::chr11:94813835..94813898,+p@chr11:94813835..94813898
+
Mm9::chr11:94813931..94813947,+p@chr11:94813931..94813947
+
Mm9::chr11:94814001..94814016,+p@chr11:94814001..94814016
+
Mm9::chr11:94814017..94814032,+p@chr11:94814017..94814032
+
Mm9::chr2:62411962..62412036,-p1@Fap
Mm9::chr6:4455695..4455709,+p1@Col1a2
Mm9::chr6:4460754..4460771,+p@chr6:4460754..4460771
+
Mm9::chr6:4466391..4466413,+p@chr6:4466391..4466413
+
Mm9::chr6:4471387..4471423,+p@chr6:4471387..4471423
+
Mm9::chr6:4480952..4480966,+p@chr6:4480952..4480966
+
Mm9::chr6:4481272..4481294,-p@chr6:4481272..4481294
-
Mm9::chr6:4483737..4483768,+p@chr6:4483737..4483768
+
Mm9::chr6:4487773..4487798,+p@chr6:4487773..4487798
+
Mm9::chr6:4487845..4487879,+p@chr6:4487845..4487879
+
Mm9::chr6:4487944..4487956,+p@chr6:4487944..4487956
+
Mm9::chr6:4488616..4488645,+p@chr6:4488616..4488645
+
Mm9::chr6:4488671..4488690,+p@chr6:4488671..4488690
+
Mm9::chr6:4488691..4488777,+p@chr6:4488691..4488777
+
Mm9::chr6:4489478..4489491,+p@chr6:4489478..4489491
+
Mm9::chr6:4489492..4489502,+p@chr6:4489492..4489502
+
Mm9::chr6:4489516..4489528,+p@chr6:4489516..4489528
+
Mm9::chr6:4489538..4489545,+p@chr6:4489538..4489545
+
Mm9::chr6:4489591..4489600,+p@chr6:4489591..4489600
+
Mm9::chr6:4489655..4489677,+p@chr6:4489655..4489677
+
Mm9::chr6:4490006..4490016,+p@chr6:4490006..4490016
+
Mm9::chr6:4490528..4490542,+p@chr6:4490528..4490542
+
Mm9::chr6:4490543..4490573,+p@chr6:4490543..4490573
+
Mm9::chr6:4490574..4490585,+p@chr6:4490574..4490585
+
Mm9::chr6:4490586..4490591,+p@chr6:4490586..4490591
+
Mm9::chr6:4490599..4490620,+p@chr6:4490599..4490620
+
Mm9::chr6:4490630..4490671,+p@chr6:4490630..4490671
+
Mm9::chr6:4490843..4490852,+p@chr6:4490843..4490852
+
Mm9::chr6:4490856..4490861,+p@chr6:4490856..4490861
+
Mm9::chr6:4490864..4490875,+p@chr6:4490864..4490875
+
Mm9::chr6:4490907..4490922,+p@chr6:4490907..4490922
+
Mm9::chr6:4491038..4491055,+p@chr6:4491038..4491055
+
Mm9::chr6:4491437..4491448,+p@chr6:4491437..4491448
+
Mm9::chr8:126415740..126415759,-p@chr8:126415740..126415759
-
Mm9::chrX:70740767..70740791,+p@chrX:70740767..70740791
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030020extracellular matrix structural constituent conferring tensile strength0.000256868543843512
GO:0005581collagen0.000256868543843512
GO:0005201extracellular matrix structural constituent0.000476698904675318
GO:0006817phosphate transport0.000476698904675318
GO:0044420extracellular matrix part0.000721351438663609
GO:0015698inorganic anion transport0.00139480863477384
GO:0006820anion transport0.00168113383247393
GO:0004287prolyl oligopeptidase activity0.00368729276955042
GO:0005578proteinaceous extracellular matrix0.00368729276955042
GO:0004274dipeptidyl-peptidase IV activity0.00552056467053565
GO:0008239dipeptidyl-peptidase activity0.00788436042515823
GO:0016806dipeptidyl-peptidase and tripeptidyl-peptidase activity0.00788436042515823
GO:0022610biological adhesion0.0104281690955106
GO:0007155cell adhesion0.0104281690955106
GO:0006811ion transport0.0134314950248656
GO:0008238exopeptidase activity0.0461127810323622



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br><br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.14.45403e-08
MA0004.10.127214
MA0006.11.89115e-06
MA0007.17.29333
MA0009.11.99455
MA0014.18.19678e-15
MA0017.10.60097
MA0019.10.504451
MA0024.10.0333525
MA0025.10.134391
MA0027.11.31999
MA0028.10.00104766
MA0029.10.118994
MA0030.10.0300435
MA0031.10.246031
MA0038.10.13757
MA0040.10.0476209
MA0041.10.354445
MA0042.12.32234
MA0043.10.0749658
MA0046.12.19172
MA0048.11.77746e-09
MA0050.11.13257
MA0051.10.0650196
MA0052.10.417166
MA0055.16.2954e-05
MA0056.10
MA0057.10.00888702
MA0058.10.0672026
MA0059.11.24037
MA0060.10.00381508
MA0061.10.00159375
MA0063.10
MA0066.11.44732
MA0067.10.195365
MA0068.14.43184
MA0069.10.734589
MA0070.10.178716
MA0071.10.101826
MA0072.10.171481
MA0073.15.79898e-13
MA0074.15.69573
MA0076.10.300445
MA0077.10.353715
MA0078.11.42984
MA0081.10.184994
MA0083.10.0746746
MA0084.10.426393
MA0087.10.0598074
MA0088.10.00408604
MA0089.10
MA0090.10.36719
MA0091.10.543353
MA0092.11.70047
MA0093.10.0869128
MA0095.10
MA0098.10
MA0100.10.162516
MA0101.10.00813979
MA0103.10.271814
MA0105.10.00862001
MA0106.12.74422
MA0107.10.0018819
MA0108.20.0639737
MA0109.10
MA0111.11.8378
MA0113.10.163168
MA0114.10.791526
MA0115.11.41389
MA0116.10.91522
MA0117.10.0645742
MA0119.10.669493
MA0122.10.071476
MA0124.11.52581
MA0125.10.126403
MA0130.10
MA0131.10.0516681
MA0132.10
MA0133.10
MA0135.10.0890221
MA0136.10.770267
MA0139.10.000122338
MA0140.10.0806094
MA0141.10.799486
MA0142.10.0909962
MA0143.10.0840224
MA0144.10.225876
MA0145.10.112971
MA0146.11.39475e-09
MA0147.10.000800976
MA0148.10.253114
MA0149.15.15868e-05
MA0062.20.00559577
MA0035.20.00958417
MA0039.21.27638e-12
MA0138.20.274798
MA0002.20.000455631
MA0137.20.148732
MA0104.20.000278422
MA0047.20.0593222
MA0112.24.5851
MA0065.22.87264
MA0150.10.295221
MA0151.10
MA0152.10.887592
MA0153.10.0958819
MA0154.13.29718
MA0155.10.537165
MA0156.11.1101
MA0157.11.68337
MA0158.10
MA0159.10.548722
MA0160.10.397469
MA0161.10
MA0162.13.53145e-07
MA0163.115.3919
MA0164.11.68745
MA0080.20.254487
MA0018.20.00243973
MA0099.20.704953
MA0079.20.000696771
MA0102.20.468654
MA0258.14.51982
MA0259.10.068237
MA0442.10
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