Coexpression cluster:C2366: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Coexpression_clusters
|full_id=C2366_Neutrophils_Eosinophils_leukemia_CD19_caudate_granulocyte_neuroectodermal
|id=C2366
}}") |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{Coexpression_clusters | {{Coexpression_clusters|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0592075530067425,0,0,0,0.780430585485707,0.676048769550988,0.7476741064653,0.335213973049259,0.537459073048254,0.5552988245218,0,0,0,0.357530749140561,0.55783061425606,0.397843734875608,0.815270749535292,0.810523189125655,0.821539109285313,0.493682867480562,0.477035485168542,0.343480421226371,0.565406878149527,0.391374994641644,0.626509553683914,0.421350631393177,0.561167641951691,0.649568957465674,0.483779381215282,0.410937989919879,0.421452629927133,0.593179084890453,0.628838603134337,0.352195154011568,0.454601839536748,0.560871813121993,0.382187088523759,0.558928320706477,0.465414555689934,0.647901896631172,0.530611107647772,0.555541507145852,0.523686142564004,0.394713056562904,0.380530774007794,0.442884120300888,0.589525179992688,0.369731569304974,0.369559751255047,0.505177516835081,0.571315322798822,0.503307187000519,0.419803035261121,0.547333201549921,0.695127874938622,0.643949473549035,0.571380384037128,0.6339524696006,0.457949611422052,0.594824650632323,0.684171520137556,0.797951852219577,0.810325693922155,0.697489387695054,0.642777535919522,0.697919056111867,0.674600646852905,0.612487004789267,0.674013223130792,0.739404590732567,0.777014611782201,0.815588998516195,0,0.310824058980691,0.318827566521521,0.767937099975689,0.902179201773073,0.64193592135217,0.576501355192748,0.391935565930179,0.484729466048793,0.417680440206846,0.529306967859717,0.537289865782009,0.552372789821902,0.486957940401146,0.553218762157914,0.625360342574385,0.565296065703137,0.610721252579196,0.533175087391697,0.513832777130728,0.570873785924251,0.310768747319633,0.63085587811774,0.511967921818602,0.570925224143344,0.675157027310983,0.499601451590884,0.73262525436527,0.376334323506235,0.396166827013383,0.394654952366816,0.564999711478352,0.64324011079424,0.623775416572274,0.791616146506261,0.898442090534705,0.872957826566217,0,0,0,0,0,0,0,0,0,0,0,0.395287323181004,0,0,0.108622809454255,0.256854223173876,0.154471276149238,0.463864966746857,0.391517788695791,0.13718235424895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.575808125343285,1.0366185095037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111277456157529,0.092362614382275,0.0649386517515055,0.0753236147385235,0.177208306223932,0.186580091664016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23606027219474,0.201612826790636,0.137416649103045,0,0,0,0,0,0,0,0,0,0.0476371106609188,0,0,0,0,0,0,0.564465607118363,0.213890331315177,0.34529841545452,0,0,0,0,0,0,0.411094679801198,0.466711915180772,0.470932207003334,0.642224844655105,0.714271681226625,0.155903391566415,0.123246440766861,0,0,0.130348058830422,0,0.26372037687998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0572119714236675,0,0.154781157784521,0.506474566535382,0.23921314089917,0.246264216334492,0,0,0,0,0,0,0.401697874711406,0.659085579145832,0.805773264543318,0.834504907705488,0.0491651531067128,0.361991832974167,0.0766702959926305,0.0336314698420933,0.0594293878375435,1.04088273208361,1.22704188396663,0.71984467284325,0,0,0,0,0,0,0,0,0,0.154253470262378,0,0,0,0,0,0.827981203630942,0.756852695423262,0.663610171381112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188721314387215,0.100865032118016,0.0495726269590695,0,0,0.295092822354513,0,0,0,0,0,0,0,0,0,0,0,0.0177602205939906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.058606388680655,0,0,0,0,0,0.118074039766487,0,0,0,0,0,0,0.274085884193118,0,0,0,0,0.613518016902123,0.767818469252083,0.889441719781634,0.820667491852756,0.812558481970487,0.658495817042352,0.670542737362379,0.821154513397162,0,0,0,0.249537399126817,0,0.0288869872731821,0.381068642396644,0.277770447012175,0.287980319657953,0.417879872260152,0.257430111799945,0.186431145735617,0.633042292662489,0.209288847573827,0.854729573810993,0.588073370589925,0.291579851162013,0.191405857061944,0.210820777883811,0.459747042344814,0.391047830902523,0.42102052314084,0.368197464360801,0.387575100844402,0.467707435650412,0.3484750399296,0.427128410039171,0,0.35923465754361,0,0.079109536082258,0,0,0,0,0.11292814946238,0,0.600149562354411,0.310514725473113,0,0,0,0.189560869707516,0.559559011028845,0,0,0.587715755408689,0,0,0,0.179428944922886,0.289639342531117,0.837822484160705,0,0.688182228589867,0.557892211753064,0.476561809887893,0,0,0.118394496259328,0,0,0,0,0.653140642765883,0,0.758012495132021,0.758457196530166,0.402401944384513,0.406218110713714,0.484949889935785,0.512292551068476,0,0,0.22673305138765,0,0,0,0,0,0,0.092776003344243,0.305766756572264,0.27711643155611,0.46816156618688,0.650248144789793,0.764669333767735,0.813151127305805,0.876057427286804,0.340559786702329,0,0,0,0,0.538130613478147,0.259451038132417,0.407555333921073,0.157503447377424,0.135167962399323,0.28201797128977,0.401048331083479,0,0.529715757883727,0.339262911689064,0,0,0.126325658803801,0.504964447131555,0.0579836861320005,0.358645598424411,0.08748967570992,0.058812041315866,0,0,0.059286596649457,0,0,0,0,0,0,0.126486544006946,0,0,0,0,0.132616543888561,0,0.208421808294264,0,0,0.689952261882651,0.0716796069902135,0,0.275660789920954,0,0,0,0,0,0,0,0,0,0,0,0.659268539554137,0.305869831923277,0.548406237158395,0,0,0.185637913671796,0.163853084473343,0.19331600339248,0.0395325284566706,0.155100922768919,0.080135636239237,0.091556269699426,0,0,0,0,0,0,0.455468866827141,0.310635864359066,0.484325667033654,0.207162723104352,0.327630218231671,0.075445784109205,0.395297363229097,0.613584410391336,0.70133844294373,0,0.0625541229565764,0.0630233743641811,0,0,0,0,0,0,0,0,0,0,0.805955076702708,0,0.0158226310979348,0.10882639389901,0.183217912531785,0.51666551240183,0.389973408274509,0,0,0.27577210197431,0.189832971428157,0.343237082116548,0.596148734310021,0.16563868031834,0.172667343854398,0,0.0466067107207475,0,0,0,0.144160902806388,0.76764867162865,0.655292459416178,0.816663529719511,0.383200273913616,0.324136399811715,0.457223834474962,0,0,0,0.054530184537229,0,0,0.0552682668253555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0584368832666485,0,0,0,0,0,0,0,0.7342001730538,0.071463750344373,0.197883813962695,0.271901056033001,0,0,0,0.340606363459839,0.220995100863856,0.433563830906608,0,0,0,0.228655653524008,0,0,0.424303019855359,0,0.456674068954915,0.958625903094285,0.87663098646525,0.415711526137593,0,0.15323424725168,0,0,0,0.727675694802731,0.849019580233593,0.898260328969376,0.709211774650655,0.210933472170296,0.66617249604064,0.728954843169683,0.485631059067025,0,0.0459985967800308,0,0,0,0,0.0393944182617646,0.069317366406359,0,0.204376677250511,0,0,0,0.723078942506576,0.722758114893874,0.774234518298432,0.683620633176884,0.462630279611682,0.09492163366577,0.387151574080896,0.653466421215779,0,0,0.151473880794678,0,0.0445394404812913,0.0369091684033041,0.668355839013194,0,0.444107500507551,0.696016455031985,0,0,0.370972366856957,0.864601701034688,0,0,0,0,0.379612830097997,0,0,0,0,0,0,0,0.352166595332852,0,0,0.311235231279236,0.081910592592736,0,0,0.134529615543375,0,0,0,0.0212213629697974,0,0.0859671683977995,0,0,0.0487990718960468,0,0,0,0.152210745742156,0.179335778193877,0,0.356641144846414,0,0.418815897479009,0.278678048600016,0.43565776534661,0,0.492890964733949,0.599367029335433,0.694204388083218,0,0,0,0.238130540907848,0.369140508116158,0.345810438697461,0,0.661805694415261,0.363433726724954,0.298612527598465,0,0,0,0,0.0429183168067241,0,0.0210885961662291,0.080116038955826,0.0190904186583736,0,0.224319486731864,0.394589278020164,0.529879986280471,0.493669486715251,0.336493658905572,0.216625621687715,0.565674806157198,0.741607859528139,0,0.0133987920685569,0.079946807131842,0.078491538131073,0,0.624782147422535,0.224770090170146,0.0623597393457245,0,0,0,0,0,0.0928836147782997,0.07413102496179,0,0.598561170472146,0.680770787480963|full_id=C2366_Neutrophils_Eosinophils_leukemia_CD19_caudate_granulocyte_neuroectodermal|id=C2366|ontology_enrichment_celltype=CL:0000037!1.66e-67!168;CL:0000566!1.66e-67!168;CL:0002032!4.01e-64!161;CL:0000837!4.01e-64!161;CL:0000988!3.23e-63!177;CL:0000738!1.09e-55!136;CL:0002031!2.36e-47!120;CL:0002087!4.07e-46!115;CL:0000763!5.20e-39!108;CL:0000049!5.20e-39!108;CL:0000766!2.17e-28!72;CL:0000557!4.94e-25!67;CL:0000839!8.61e-24!66;CL:0002009!2.78e-22!61;CL:0002242!1.33e-21!55;CL:0000542!1.37e-21!53;CL:0000051!1.37e-21!53;CL:0000838!1.77e-21!52;CL:0002194!1.87e-21!59;CL:0000576!1.87e-21!59;CL:0000040!1.87e-21!59;CL:0000559!1.87e-21!59;CL:0000473!8.57e-21!48;CL:0000234!8.57e-21!48;CL:0000860!1.79e-19!42;CL:0002057!1.79e-19!42;CL:0000945!1.04e-12!24;CL:0000826!1.04e-12!24;CL:0000791!2.14e-10!18;CL:0000789!2.14e-10!18;CL:0002420!2.14e-10!18;CL:0002419!2.14e-10!18;CL:0000790!2.14e-10!18;CL:0000236!2.07e-08!14;CL:0000084!2.51e-08!25;CL:0000827!2.51e-08!25;CL:0000325!1.75e-07!87;CL:0000625!4.42e-07!11|ontology_enrichment_disease=DOID:8692!5.22e-10!31;DOID:2531!7.36e-10!51;DOID:0060083!7.36e-10!51;DOID:1240!5.07e-09!39|ontology_enrichment_uberon=UBERON:0002390!1.54e-32!98;UBERON:0003061!1.54e-32!98;UBERON:0007023!3.79e-31!114;UBERON:0002193!2.54e-28!108;UBERON:0002371!7.95e-21!76;UBERON:0002405!1.84e-20!93;UBERON:0001474!6.45e-18!82;UBERON:0001049!1.19e-16!56;UBERON:0005068!1.19e-16!56;UBERON:0006241!1.19e-16!56;UBERON:0007135!1.19e-16!56;UBERON:0000073!7.76e-16!53;UBERON:0002616!7.76e-16!53;UBERON:0001893!6.28e-15!34;UBERON:0003528!1.15e-14!34;UBERON:0002020!1.15e-14!34;UBERON:0002780!1.75e-14!41;UBERON:0001890!1.75e-14!41;UBERON:0003080!1.75e-14!41;UBERON:0006240!1.75e-14!41;UBERON:0001869!1.83e-14!32;UBERON:0004765!3.79e-14!90;UBERON:0002791!5.24e-14!32;UBERON:0002619!4.23e-13!22;UBERON:0001950!1.19e-12!20;UBERON:0001017!1.67e-12!81;UBERON:0001434!1.11e-11!100;UBERON:0001016!4.05e-11!89;UBERON:0002346!1.40e-10!86;UBERON:0000955!1.69e-10!68;UBERON:0006238!1.69e-10!68;UBERON:0000956!2.03e-10!25;UBERON:0000203!2.03e-10!25;UBERON:0000178!1.06e-09!15;UBERON:0000179!1.06e-09!15;UBERON:0000463!1.06e-09!15;UBERON:0003075!6.46e-09!82;UBERON:0007284!6.46e-09!82;UBERON:0003056!3.13e-07!61|tf_chipseq_enrich=PBX3#5090;2:10.9572563433721:0.0117453018068803:0.0428335629376624!TAL1#6886;2:14.9343083387201:0.00642807757788807:0.0279458016965846|tfbs_overrepresentation=0.191353,0.0774498,0.0285313,0.0631091,0.257053,0.0761719,0.0569281,0.510252,0.043387,0.0341265,0.181435,0.288577,0.243414,0.164339,0.0199865,0.0816702,0.183412,0.128744,0.0698403,0.141416,0.243245,0.172742,0.107781,0.124486,0.0550418,0.276459,0.268949,0.119094,0.186914,0.122514,0.26347,0.149094,0.0239693,0.267529,0.0877018,0.111013,0.0212217,0.0568767,0.157159,0.0879352,0.126525,0.0326801,0.182216,0.2375,0.157881,0.0480278,0.0503649,0.234372,0.145553,0.158244,0.19996,0.0715789,0.0924421,0.12203,0.255843,0.0508907,0.140644,0.273035,0.103044,0.138225,0.0390464,0.194086,0.142115,0.0999599,0.0720888,0.0667453,0.439574,0.0792005,0.113084,0.0252868,0.133576,0.0892037,0.116917,0.155921,0.00995563,0.0227583,0.126543,0.0578308,0.0493551,0.00965832,0.125428,0.290468,0.0562614,0.150119,0.0780785,0.320801,0.0848546,0.268505,0.355976,0.0827752,0.112676,0.00219793,0.12511,0.0626609,0.112199,0.150351,0.114558,0.199405,0.121709,0.347653,0.0759036,0.350158,0.184542,0.0491142,0.280878,0.0541957,0.0883058,0.105785,0.187509,0.34189,0.23573,0.0450707,0.194256,0.0235108,0.00921236,0.0447483,0.0270258,0.0748174,0.0174545,0.110194,0.215858,0.275495,0.182323,0.00660477,0.134107,0.0283927,0.119051,0.0196757,0.110868,0.175735,0.078637,0.0985137,0.0755515,0.0302655,0.164103,0.141472,0.085537,0.0730922,0.0438087,0.0052702,0.0302521,0.166414,0.262198,0.202388,0.122756,0.0913381,0.129544,0.110696,0.0515825,0.157774,0.258146,0.186826,0.0296391,0.0352845,0.0565357,0.153577,0.0984158,0.29227,0.0683304,0.0447121,0.291455,0.124982,0.152417,0.0197458,0.346873,0.149398,0.0530169,0.166112,0.0534404,0.392741,0.2321,0.179282,0.052046,0.0715212,0.105131,0.118265,0.182591,0.234755,0.230552,0.0472274,0.205973,0.159869,0.0363736,0.15105,0.0970713,0.155237,0.236268,0.0532055,0.108938,0.224443,0.140245,0.241581,0.160458,0.292792,0.147332,0.00198009,0.102951,0.0795624,0.0891668,0.14349,0.117261,0.0797088,0.0408965,0.0799774,0.177664,0.329956,0.346995,0.197158,0.265132,0.230439,0.0606832,0.136664,0.158184,0.147626,0.393313,0.218801,0.21271,0.132273,0.0830988,0.134907,0.184613,0.462724,0.202467,0.208718,0.0972471,0.165147,0.180711,0.112956,0.0797807,0.0790532,0.309911,0.00439336,0.0553945,0.10068,0.125804,0.122288,0.0624687,0.0634515,0.21183,0.275612,0.235571,0.112872,0.128998,0.109226,0.151958,0.178155,0.107176,0.146021,0.463127,0.15291,0.206234,0.238926,0.239646,0.128521,0.1286,0.207017,0.14037,0.0370757,0.0916845,0.324438,0.0816983,0.226367,0.211672,0.167038,0.0457509,0.106603,0.106727,0.12083,0.154253,0.0993998,0.352707,0.0834863,0.324356,0.00867491,0.113754,0.0504034,0.169684,0.690367,0.810881,0.0560372,0.73998,0.668426,0.407767,0.0246898,0.104083,0.381628,0.332539,0.545329,0.129819,0.389374,0.0631104,0.414547,0.489273,0.413223,0.639461,0.00988117,0.34505,0.369161,0.0334148,0.147194,0.323639,0.341822,0.241524,0.45167,0.234628,0.00011754,0.143893,0.41477,0.279946,0.0395226,0.467825,0.0102566,0.164225,0.019108,0.624969,0.460819,0.511459,0.221488,0.322903,0.350886,0.380582,0.583749,0.0926754,0.286293,0.000414241,0.708425,0.359128,0.395864,0.109703,0.368633,0.547291,0.317802,0.512763,0.369971,0.214221,0.537928,0.0255795,0.00120723,0.356005,0.235444,0.48585,0.0832187,0.00287093,0.349116,0.302142,0.239545,0.432689,0.272581,0.343881,0.145459,0.239383,0.250139,0.00342662,0.316925,0.356561,0.0552678,0.211506,0.0883859,0.0962508,0.238465,0.70198,0.853221,0.112487,0.159267,0.187096,0.651927,0.656755,0.046332,0.280307,0.393583,0.794849,0.0596868,0.0984075,0.293026,0.753513,0.00141833,0.605423,0.372182,0.429205,0.0572193,0.365653,0.0988815,0.453022,0.35234,0.376421,0.525923,0.291917,0.421082,0.25441,0.202782,0.307342,0.517933,0.584705,0.517001,0.0746589,0.0497525,0.419676,0.188259,0.189182,0.477589,0.131612,0.0460871,0.560187,0.321282,0.198207,0.0616078,0.178485,0.329745,0.175552,0.129238,0.283924,0.370995,0.360161,0.429696,0.386216,0.385297,0.126311,0.239407,0.259338,0.360203,0.333725,0.447838,0.289666,0.153861,0.513045,0.122807,0.565545,0.287542,0.265037,0.629795,0.410093,0.53531,0.341771,0.424526,0.290547,0.356381,0.184395,0.194887,0.0766597,0.206945,0.304719,0.128825,0.296994,0.244339,0.117049,0.0786167,0.629381,0.376317,0.433821,0.64428,0.113459,0.0115435,0.499072,0.00283311,1.0709e-05,0.397546,0.0919254,0.0735469,0.248103,0.102621,0.0760107,0.187642,0.286156,0.261868,0.184029,0.540322,0.247151,0.146385,0.365815,0.0576261,0.382413,0.164977,0.175633,0.139918,0.34669,0.0828344,0.135364,0.0238089,0.0851202,0.354433,0.48311,0.0614918,0.219485,0.149782,0.136923,0.118103,0.113892,0.207214,0.140201,0.0580534,0.00518407,0.161297,0.168389,0.270152,0.249506,0.432751,0.0660736,0.108971,0.0879235,0.235214,0.145546,0.28124,0.417003,0.251882,0.172263,0.0323461,0.0637178,0.036377,7.26058e-07,0.166608,0.227224,0.238082,0.219023,0.115115,0.124916,0.0149794,0.28498,0.140114,0.348988,0.00641248,0.224626,0.183585,0.271662,0.03989,0.171436,0.05892,0.0691994,0.268299,0.198844,0.104946,0.127738,0.207615,0.161213,0.118999,0.0737069,0.357807,0.621787,0.178782,0.019419,0.0866228,0.271849,0.044355,0.105411,0.0997542,0.0237068,0.248936,0.0725263,0.102587,0.0742013,0.0552936,0.0457886,0.0514927,0.324236,0.220368,0.258624,0.064656,0.226143,0.0248217,0.0438521,0.0204239,0.281453,0.0522771,0.0787278,0.00648069,0.159873,0.142462,0.143935,0.332403,0.0379537,0.00471564,0.187953,0.051459,0.114868,0.0726892,0.18732,1.94269e-07,0.278397,0.245002,0.170848,0.487259,0.302909,0.363016,0.100188,0.223102,0.107653,0.235857,0.103852,0.191914,0.184022,0.216557,0.182956,0.116818,0.389792,0.36316,0.0625685,0.124464,0.00130916,0.173134,0.101893,0.142875,0.0149091,0.171311,0.0210393,0.548036,0.0685131,0.130287,0.0661526,0.0815772,0.0993937,1.10883e-05,0.187329,0.0451012,0.0976639,0.00979133,0.107849,0.415079,0.278645,0.365775,0.0128057,0.248017,0.028736,0.00463504,0.0760151,0.0629459,0.0300882,0.0803251,0.226641,0.379174,0.0939463,0.286748,0.0779623,0.0471607,0.163865,0.226359,0.0176801,0.0339072,0.265324,0.043404,0.141699,0.0887743,0.142302,0.0653269,0.125712,0.264432,0.0994829,0.0604041,0.144185,0.0925862,0.289561,0.199201,0.049937,0.172796,0.0595495,0.071232,0.149346,0.121978,0.22302,0.137423,0.0448074,0.0754883,0.299492,0.100006,0.362866,0.197817,0.0345492,0.279874,0.133127,0.410303,0.223717,0.107609,0.196838,0.0826805,0.246601,0.193021,0.0689994,0.202165,0.0946865,0.120618,0.079499,0.18762,0.0205193,0.127688,0.201169,0.220353,0.034089,0.178639,0.291976,0.320355,0.364334,0.15547,0.110256,0.101581,0.14794,0.147307,0.240761,0.225961,0.124417,0.335582,0.317428,0.182843,0.130771,0.327768,0.135777,0.147842,0.0339286,0.217363,0.119015,0.690952,0.21618,0.243266,0.107021,0.238657,0.20272,0.392453,0.61565,0.0780061,0.315336,0.230477,0.043419,0.0487563,0.502112,0.140541,0.0478217,0.507599,0.170854,0.0575231,0.174063,0.514243,0.003653,0.54832,0.00568499,0.296013,0.0895871,0.537932,0.459994,0.523209,0.548059,0.25423,0.490559,0.45013,0.153911,0.472542,0.111549,0.0510811,0.529642,0.244786,0.483077,0.590496,0.603763,0.541914,0.627201,0.0635843,0.0594404,0.290703,0.017476,0.0413786,0.139104,0.360199,0.00278148,0.290133,0.099511,0.365494,0.212703,0.56318,0.364079,0.000184392,0.579886,0.421038,0.569409,0.328518,0.187186,0.310552,0.0529131,0.00472069,0.528161,0.0698158,0.209437,0.284058,0.161672,0.00037168,0.169076,0.0255132,0.0572812,0.0572388,0.0565519,0.113944,0.0155453,0.261575,0.257956,0.264245,0.379063,0.00767615,0.522925,0.436016,0.475063,0.202522,0.183837,0.507324,0.126097,0.3955,0.116739,0.212239,0.294954,0.156999,0.0106153,0.301684,0.39549,0.234254,0.357409,0.146291,0.721266,0.50338,8.1848e-06,0.404625,0.0151906,0.424691,0.00931622,0.479581,0.62689,0.00176979,0.274432,0.000400972,0.512545,0.512178,0.563206,0.034169,0.0299859,0.263302,0.047857,0.180735,0.0182207,0.216102,0.254659,0.109605,0.397869,0.582542,0.226491,0.417131,0.463987,0.260097,0.156131,0.454761,0.271678,0.00471559,0.452129,0.301581,0.261657,0.346776,0.466529,0.0458396,0.438176,0.349112,0.0485429,0.385425,0.307816,0.461541,0.386339,0.382854,0.598787,0.139139,0.24434,0.319747,0.475047,0.557967,0.0690544,0.282281,0.245336,0.2536,0.246827,0.564333,0.70712,0.387134,0.198743,0.358813,0.303004,0.574252,0.493455,0.346636,0.457747,0.348802,0.476541,0.579645,0.447581,0.42505,0.254628,0.355111,0.479347,0.416962,0.264955,0.378333,0.738545,0.264038,0.22798,0.102495,0.350933,0.263896,0.0446972,0.24452,0.329284,0.242783,0.00463517,0.336551,0.210656,0.246234,0.211271,0.281295,0.267248,0.118257,0.125087,0.215123,0.321224,0.469461,0.325254,0.266651,0.00871319,0.231754,0.0340704,0.283107,7.20869e-08,0.427316,0.391071,0.279553,0.25563,0.240967,0.160955,0.256687,0.0432189,0.122439,0.16188,0.0293669,0.290415,0.353147,0.112422,0.170886,0.267687,0.315656,0.284866,0.0887542,0.267811,0.338547,0.147872,0.189388,0.293546,0.210125,0.292967,0.218414,0.0509944,0.0871471,0.0689852,0.0602698,0.341188,0.259328,0.113839,0.201057,0.15696,0.129351,0.141936,0.0786166,0.276997,0.205513,0.282389,0.251421,0.162089,0.330223,0.387837,0.233244,0.207281,0.327401,0.195748,0.27845,0.161712,0.237871,0.0311922,0.095257,0.328852,0.332769,0.262022,0.274403,0.266687,0.184534,0.248707,0.31749,0.15156,0.287598,0.313858,0.223773,0.25788,0.181895,0.253768,0.30702,0.202977,0.170837,0.327002,0.28543,0.222656,0.228479,0.127111,0.259989,0.390754,0.355805,0.279739,0.108118,0.259901,0.139723,0.0708274,0.0710478,0.196248,0.102645,0.0539258,0.0709978,0.401939,0.332746,0.271338,0.032013,0.298673,0.0326468,0.106889,0.128632,0.0845989,0.159153,0.0842401,0.13698,0.0874421,0.100355,0.167854,0.142846,0.0583767,0.088258,0.117657,0.0486914,0.175784,0.262778,0.373453,0.362662,0.0201006,0.184359,0.334474,0.325785,0.257476,0.291176,0.376537,0.0588457,0.229571,0.359036,0.335984,0.171704,0.208256,0.265058,0.256405,0.0109327,0.302133,0.40806,0.151361,0.279606,0.286696,0.150674,0.0345639,0.246177,0.35674,0.35852,0.318525,0.213257,0.287217,0.122782,0.410951,0.289049,0.266974,0.125746,0.112897,0.398354,0.222091,0.205977,0.0675312,0.0936726,0.0671916,0.132374,0.285122,0.22741,0.203996,0.0424072,0.321965,0.264707,0.450113|tfbs_overrepresentation_for_novel_motifs=0.590005,0.0888524,0.581696,0.741427,0.534346,0.739643,0.821651,0.395818,0.392841,0.902371,0.706765,0.867962,0.341754,0.809319,0.532789,0.559384,1.05593,0.471262,2.52739,0.223552,0.581762,0.505745,0.731221,0.528529,0.632849,0.892087,0.316693,1.72987,0.537869,0.297585,0.682839,1.09415,0.433165,0.344471,2.14358,0.598278,0.491074,0.740899,0.463978,0.971732,0.493145,0.66492,0.183156,0.53106,0.314427,0.61613,0.822818,0.694903,0.173425,0.538016,0.90714,0.83543,0.25073,1.17354,1.33024,0.812467,0.54284,0.777235,0.297448,0.776148,1.13655,0.825354,0.393426,1.02706,0.844545,0.991076,1.42026,1.79268,1.08337,1.62905,0.650393,0.402607,0.248021,1.32819,0.893276,0.321165,0.305238,1.00941,1.08,0.62601,0.362435,1.02594,0.844168,1.03184,1.27559,0.716653,0.221873,0.291738,0.934646,1.89266,1.51507,1.24792,1.11156,0.441618,0.535192,0.456994,0.354969,1.15558,0.939507,0.272395,0.465545,1.1057,1.14983,1.05974,0.979006,0.701817,1.04326,1.88833,1.52945,0.516141,0.594299,1.14697,0.575476,0.717043,1.46636,0.489254,2.51097,0.681522,0.988625,0.444962,1.31973,0.932085,0.736652,0.856196,1.57854,1.0102,0.814847,1.11673,1.36323,0.458105,1.24863,0.68598,1.37788,0.852645,1.52813,0.283547,0.676268,0.729481,1.48509,2.34913,1.94535,1.44718,0.8167,1.15194,0.980848,0.768101,0.963351,2.1895,0.661255,1.11576,0.234974,0.175846,1.24902,0.997363,0.824835,1.65997,0.917558,0.518428,0.632914,0.600782,1.44595,1.23002,1.07918,0.604379,0.997702,0.843324,0.423521,0.820225,1.00378|tfbs_overrepresentation_jaspar=MA0003.1;2.39007,MA0004.1;0.71247,MA0006.1;0.532262,MA0007.1;0.6918,MA0009.1;1.20602,MA0014.1;1.34758,MA0017.1;0.577281,MA0019.1;0.873355,MA0024.1;1.09684,MA0025.1;1.34373,MA0027.1;2.83281,MA0028.1;0.550763,MA0029.1;1.11704,MA0030.1;1.10506,MA0031.1;1.03735,MA0038.1;0.824639,MA0040.1;1.12314,MA0041.1;0.732902,MA0042.1;0.697662,MA0043.1;1.20635,MA0046.1;1.19471,MA0048.1;4.64626,MA0050.1;0.69864,MA0051.1;0.820063,MA0052.1;1.12718,MA0055.1;2.526,MA0056.1;0,MA0057.1;0.248209,MA0058.1;0.605914,MA0059.1;0.604454,MA0060.1;0.393285,MA0061.1;0.360128,MA0063.1;0,MA0066.1;0.825101,MA0067.1;1.53181,MA0068.1;0.313194,MA0069.1;1.19071,MA0070.1;1.17908,MA0071.1;0.782546,MA0072.1;1.1744,MA0073.1;2.36824,MA0074.1;0.819248,MA0076.1;0.623864,MA0077.1;1.16637,MA0078.1;0.926725,MA0081.1;0.604638,MA0083.1;1.21381,MA0084.1;1.72172,MA0087.1;1.17185,MA0088.1;0.182167,MA0089.1;0,MA0090.1;0.640115,MA0091.1;0.715356,MA0092.1;0.673508,MA0093.1;0.535768,MA0095.1;0,MA0098.1;0,MA0100.1;0.83965,MA0101.1;0.539569,MA0103.1;0.521546,MA0105.1;1.22348,MA0106.1;0.869173,MA0107.1;0.453492,MA0108.2;1.03412,MA0109.1;0,MA0111.1;0.655276,MA0113.1;0.886811,MA0114.1;0.447443,MA0115.1;1.45393,MA0116.1;1.15856,MA0117.1;1.24497,MA0119.1;0.586221,MA0122.1;1.27173,MA0124.1;1.41151,MA0125.1;1.32534,MA0130.1;0,MA0131.1;0.94608,MA0132.1;0,MA0133.1;0,MA0135.1;1.23748,MA0136.1;0.832277,MA0139.1;0.344952,MA0140.1;0.779643,MA0141.1;0.602484,MA0142.1;1.00381,MA0143.1;0.887001,MA0144.1;0.430413,MA0145.1;1.08195,MA0146.1;2.31379,MA0147.1;0.46175,MA0148.1;0.739888,MA0149.1;0.769072,MA0062.2;0.353589,MA0035.2;0.778873,MA0039.2;3.07509,MA0138.2;0.928035,MA0002.2;0.379056,MA0137.2;0.558189,MA0104.2;0.392359,MA0047.2;0.856092,MA0112.2;1.05083,MA0065.2;0.577908,MA0150.1;0.633493,MA0151.1;0,MA0152.1;0.78681,MA0153.1;1.30799,MA0154.1;1.21162,MA0155.1;0.180766,MA0156.1;0.560797,MA0157.1;0.97481,MA0158.1;0,MA0159.1;0.462502,MA0160.1;0.756582,MA0161.1;0,MA0162.1;0.309472,MA0163.1;0.253219,MA0164.1;0.90014,MA0080.2;0.535868,MA0018.2;0.870662,MA0099.2;0.7872,MA0079.2;3.12283,MA0102.2;1.75932,MA0258.1;0.418966,MA0259.1;0.471671,MA0442.1;0}} | ||
|full_id=C2366_Neutrophils_Eosinophils_leukemia_CD19_caudate_granulocyte_neuroectodermal | |||
|id=C2366 | |||
}} |
Latest revision as of 12:04, 17 September 2013
Full id: C2366_Neutrophils_Eosinophils_leukemia_CD19_caudate_granulocyte_neuroectodermal
Phase1 CAGE Peaks
Hg19::chr16:23847254..23847261,+ | p2@PRKCB |
Hg19::chr16:23847267..23847335,+ | p1@PRKCB |
Hg19::chr16:24060399..24060400,+ | p@chr16:24060399..24060400 + |
Hg19::chr16:24223808..24223818,+ | p@chr16:24223808..24223818 + |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 5.22e-10 | 31 |
hematologic cancer | 7.36e-10 | 51 |
immune system cancer | 7.36e-10 | 51 |
leukemia | 5.07e-09 | 39 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 2.39007 |
MA0004.1 | 0.71247 |
MA0006.1 | 0.532262 |
MA0007.1 | 0.6918 |
MA0009.1 | 1.20602 |
MA0014.1 | 1.34758 |
MA0017.1 | 0.577281 |
MA0019.1 | 0.873355 |
MA0024.1 | 1.09684 |
MA0025.1 | 1.34373 |
MA0027.1 | 2.83281 |
MA0028.1 | 0.550763 |
MA0029.1 | 1.11704 |
MA0030.1 | 1.10506 |
MA0031.1 | 1.03735 |
MA0038.1 | 0.824639 |
MA0040.1 | 1.12314 |
MA0041.1 | 0.732902 |
MA0042.1 | 0.697662 |
MA0043.1 | 1.20635 |
MA0046.1 | 1.19471 |
MA0048.1 | 4.64626 |
MA0050.1 | 0.69864 |
MA0051.1 | 0.820063 |
MA0052.1 | 1.12718 |
MA0055.1 | 2.526 |
MA0056.1 | 0 |
MA0057.1 | 0.248209 |
MA0058.1 | 0.605914 |
MA0059.1 | 0.604454 |
MA0060.1 | 0.393285 |
MA0061.1 | 0.360128 |
MA0063.1 | 0 |
MA0066.1 | 0.825101 |
MA0067.1 | 1.53181 |
MA0068.1 | 0.313194 |
MA0069.1 | 1.19071 |
MA0070.1 | 1.17908 |
MA0071.1 | 0.782546 |
MA0072.1 | 1.1744 |
MA0073.1 | 2.36824 |
MA0074.1 | 0.819248 |
MA0076.1 | 0.623864 |
MA0077.1 | 1.16637 |
MA0078.1 | 0.926725 |
MA0081.1 | 0.604638 |
MA0083.1 | 1.21381 |
MA0084.1 | 1.72172 |
MA0087.1 | 1.17185 |
MA0088.1 | 0.182167 |
MA0089.1 | 0 |
MA0090.1 | 0.640115 |
MA0091.1 | 0.715356 |
MA0092.1 | 0.673508 |
MA0093.1 | 0.535768 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.83965 |
MA0101.1 | 0.539569 |
MA0103.1 | 0.521546 |
MA0105.1 | 1.22348 |
MA0106.1 | 0.869173 |
MA0107.1 | 0.453492 |
MA0108.2 | 1.03412 |
MA0109.1 | 0 |
MA0111.1 | 0.655276 |
MA0113.1 | 0.886811 |
MA0114.1 | 0.447443 |
MA0115.1 | 1.45393 |
MA0116.1 | 1.15856 |
MA0117.1 | 1.24497 |
MA0119.1 | 0.586221 |
MA0122.1 | 1.27173 |
MA0124.1 | 1.41151 |
MA0125.1 | 1.32534 |
MA0130.1 | 0 |
MA0131.1 | 0.94608 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 1.23748 |
MA0136.1 | 0.832277 |
MA0139.1 | 0.344952 |
MA0140.1 | 0.779643 |
MA0141.1 | 0.602484 |
MA0142.1 | 1.00381 |
MA0143.1 | 0.887001 |
MA0144.1 | 0.430413 |
MA0145.1 | 1.08195 |
MA0146.1 | 2.31379 |
MA0147.1 | 0.46175 |
MA0148.1 | 0.739888 |
MA0149.1 | 0.769072 |
MA0062.2 | 0.353589 |
MA0035.2 | 0.778873 |
MA0039.2 | 3.07509 |
MA0138.2 | 0.928035 |
MA0002.2 | 0.379056 |
MA0137.2 | 0.558189 |
MA0104.2 | 0.392359 |
MA0047.2 | 0.856092 |
MA0112.2 | 1.05083 |
MA0065.2 | 0.577908 |
MA0150.1 | 0.633493 |
MA0151.1 | 0 |
MA0152.1 | 0.78681 |
MA0153.1 | 1.30799 |
MA0154.1 | 1.21162 |
MA0155.1 | 0.180766 |
MA0156.1 | 0.560797 |
MA0157.1 | 0.97481 |
MA0158.1 | 0 |
MA0159.1 | 0.462502 |
MA0160.1 | 0.756582 |
MA0161.1 | 0 |
MA0162.1 | 0.309472 |
MA0163.1 | 0.253219 |
MA0164.1 | 0.90014 |
MA0080.2 | 0.535868 |
MA0018.2 | 0.870662 |
MA0099.2 | 0.7872 |
MA0079.2 | 3.12283 |
MA0102.2 | 1.75932 |
MA0258.1 | 0.418966 |
MA0259.1 | 0.471671 |
MA0442.1 | 0 |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
TF | #promoters | Enrichment | p-value | q-value |
---|---|---|---|---|
PBX3#5090 | 2 | 10.9572563433721 | 0.0117453018068803 | 0.0428335629376624 |
TAL1#6886 | 2 | 14.9343083387201 | 0.00642807757788807 | 0.0279458016965846 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.