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Coexpression cluster:C123: Difference between revisions

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{{Coexpression_clusters
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membrane-bound organelle!0.0226705607721863!7597;84911;65986;572;57062;57620;57132;26512;79868;8013;8899;6322;9975;51335;79019;23517$GO:0043227!membrane-bound organelle!0.0226705607721863!7597;84911;65986;572;57062;57620;57132;26512;79868;8013;8899;6322;9975;51335;79019;23517$GO:0032235!negative regulation of calcium ion transport via store-operated calcium channel!0.0400800066572294!57620$GO:0004577!N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity!0.0400800066572294!79868$GO:0016070!RNA metabolic process!0.0400800066572294!26512;7597;84911;8899;8013;6322;65986;57062;9975;23517$GO:0005634!nucleus!0.0460791453004554!26512;7597;84911;8899;8013;6322;65986;57062;79019;51335;9975;23517$GO:0032234!regulation of calcium ion transport via store-operated calcium channel!0.0460791453004554!57620$GO:0008523!sodium-dependent multivitamin transmembrane transporter activity!0.0460791453004554!8884$GO:0043169!cation 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83,0.646183,0.123856,0.661918,0.83016,0.854025,0.997232,0.962822,0.947619,0.393841,0.485982,0.182823,0.9032,0.842499,0.664369,0.901884,0.118768,0.300799,0.942933,0.750937,0.96944,0.145535,0.897542,0.528292,0.318248,0.40631,0.777575,0.879502,0.693891,0.614327,0.775925,0.824875,0.577904,0.614399,0.978018,0.11418,0.55416,0.358879,0.997828,0.898442,0.916575,0.0181566,0.501926,0.364841,0.833158,0.811695,0.776422,0.568542,0.21614,0.984792,0.958275,0.538895,0.861779,0.191333,0.997667,0.600212,0.920786,0.911209,0.0199015,0.135604,0.5434,0.105841,0.600278,0.503435,0.417835,0.922247,0.973176,0.31683,0.0241322,0.230592,0.7798,0.241584,0.224094,0.302148,0.106785,0.903722,0.964559,0.538723,0.233555,0.661777,0.644325,0.654932,0.834023,0.275267,0.921121,0.999822,0.634404,0.834486,0.972293,0.863351,0.991672,0.9888,0.998646,0.803227,0.211823,0.663679,0.912407,0.65396,0.928341,0.967469,0.926663,0.871682,0.844347,0.982888,0.906042,0.967531,0.997497,0.225306,0.961955,0.84527,0.609357,0.339534,0.990606,0.882861,0.968338,0.76995,0.999943,0.111568,0.992601,0.99447,0.877209,0.36738,0.811561,0.999784,0.981141,0.465655,0.574814,0.873318,0.993919,0.590976,0.678523,0.957584,0.453068,0.949505,0.659245,0.96719,0.999354|tfbs_overrepresentation_for_novel_motifs=2.39826,0.304605,0.81666,0.13283,0.217194,0.345337,0.826163,0.113786,0.983647,1.14068,0.95591,0.0459742,0.424266,3.63287,0.40844,0.289978,1.66406,0.0307267,0.0482951,0.554865,0.174652,1.78005,0.861564,0.0498423,0.573244,1.16359,0.119651,1.08743,0.226697,0.665877,1.04376,0.228467,0.104887,0.159527,2.26942,0.0484939,2.49399,1.74692,0.076625,0.531496,0.0789972,0.550015,0.0932754,0.14013,1.00075,0.841535,1.72242,1.38178,0.0106742,0.714678,1.58615,0.88824,0.412155,0.945559,0.282866,2.78264,0.240515,0.453125,0.464113,1.10852,1.20535,0.612967,0.282823,1.51071,1.21439,0.0442386,0.384098,0.349306,0.678829,0.666071,1.30275,0.181572,0.995636,0.280736,1.27883,0.234105,0.52834,0.489234,0.0836517,0.0328456,0.0833713,0.529124,0.036271,0.891462,0.228549,3.42669,3.18427,0.272698,3.08528,0.425715,0.16897,0.447859,0.249608,0.0077829,0.866245,0.00530092,0.0703092,0.562696,2.20545,0.520972,0.000988202,0.458102,0.871927,0.189639,0.419805,1.1676,3.02796,0.756469,0.571971,2.58866,0.713308,0.295629,0.777735,2.55138,0.441102,0.442957,1.166,1.28204,0.253848,0.0853163,0.271992,0.0805421,0.0654876,0.0409771,0.592618,0.0513762,0.0681545,1.5404,0.318334,0.0688837,0.0555681,1.06384,0.102221,0.323469,1.0034,0.134481,0.120214,0.852558,0.152952,0.820932,1.18061,0.826148,0.0269699,0.554736,0.658737,0.817269,0.217936,0.676184,0.101501,0.513248,0.596303,2.50647,0.449679,2.0141,0.152521,0.71245,0.160611,1.54746,0.0364042,2.53783,0.823535,0.73608,0.211094,0.326704,0.129724,0.176799,0.669,0.0717997,1.31977|tfbs_overrepresentation_jaspar=MA0003.1;3.94459,MA0004.1;0.277155,MA0006.1;3.50363,MA0007.1;0.493714,MA0009.1;0.043756,MA0014.1;2.49147,MA0017.1;0.0314916,MA0019.1;0.048398,MA0024.1;3.48174,MA0025.1;0.297134,MA0027.1;1.2818,MA0028.1;1.18549,MA0029.1;0.104905,MA0030.1;0.73961,MA0031.1;0.166502,MA0038.1;0.419042,MA0040.1;0.108691,MA0041.1;0.0627897,MA0042.1;0.365035,MA0043.1;0.168136,MA0046.1;0.0409148,MA0048.1;1.73821,MA0050.1;0.367934,MA0051.1;0.257592,MA0052.1;0.111236,MA0055.1;0.226189,MA0056.1;0,MA0057.1;0.557244,MA0058.1;0.0898452,MA0059.1;0.146405,MA0060.1;0.697443,MA0061.1;4.48399,MA0063.1;0,MA0066.1;0.0752136,MA0067.1;0.527439,MA0068.1;0.327195,MA0069.1;1.90713,MA0070.1;0.963074,MA0071.1;0.0488448,MA0072.1;0.143581,MA0073.1;4.63255,MA0074.1;0.591374,MA0076.1;1.59981,MA0077.1;0.137748,MA0078.1;0.0771559,MA0081.1;0.772793,MA0083.1;0.174178,MA0084.1;0.298328,MA0087.1;0.0355353,MA0088.1;0.228283,MA0089.1;0,MA0090.1;0.0785385,MA0091.1;0.0511661,MA0092.1;0.586564,MA0093.1;0.149347,MA0095.1;0,MA0098.1;0,MA0100.1;0.296209,MA0101.1;3.28765,MA0103.1;0.26423,MA0105.1;3.10416,MA0106.1;0.778551,MA0107.1;3.96466,MA0108.2;0.0613141,MA0109.1;0,MA0111.1;0.0498247,MA0113.1;0.127754,MA0114.1;0.133927,MA0115.1;0.137131,MA0116.1;0.511179,MA0117.1;1.1808,MA0119.1;1.26523,MA0122.1;0.487992,MA0124.1;0.116998,MA0125.1;0.0812931,MA0130.1;0,MA0131.1;1.83582,MA0132.1;0,MA0133.1;0,MA0135.1;0.194101,MA0136.1;0.637897,MA0139.1;0.783302,MA0140.1;0.64963,MA0141.1;0.0226044,MA0142.1;0.276862,MA0143.1;0.242669,MA0144.1;0.72147,MA0145.1;0.0885127,MA0146.1;1.97967,MA0147.1;0.668203,MA0148.1;0.0296341,MA0149.1;0.000479499,MA0062.2;1.93549,MA0035.2;0.304691,MA0039.2;1.63353,MA0138.2;0.506569,MA0002.2;0.033117,MA0137.2;0.286227,MA0104.2;1.1437,MA0047.2;0.194816,MA0112.2;0.223764,MA0065.2;0.372525,MA0150.1;0.426446,MA0151.1;0,MA0152.1;0.109274,MA0153.1;0.260072,MA0154.1;0.721769,MA0155.1;1.12256,MA0156.1;0.13456,MA0157.1;0.110922,MA0158.1;0,MA0159.1;0.0452899,MA0160.1;0.153108,MA0161.1;0,MA0162.1;2.37127,MA0163.1;0.410202,MA0164.1;0.264818,MA0080.2;0.551481,MA0018.2;1.36479,MA0099.2;0.199546,MA0079.2;2.71473,MA0102.2;0.324981,MA0258.1;0.0804608,MA0259.1;2.19796,MA0442.1;0}}
|full_id=C123_CD19_Natural_CD8_CD4_CD14_Peripheral_Basophils
|id=C123
}}

Latest revision as of 10:37, 17 September 2013


Full id: C123_CD19_Natural_CD8_CD4_CD14_Peripheral_Basophils



Phase1 CAGE Peaks

Hg19::chr10:12392687..12392699,-p@chr10:12392687..12392699
-
Hg19::chr10:126432640..126432663,-p4@FAM53B
Hg19::chr10:126432670..126432723,-p3@FAM53B
Hg19::chr10:15139614..15139671,-p1@C10orf111
Hg19::chr10:5727231..5727239,-p1@AK126513
Hg19::chr11:113185382..113185393,+p3@TTC12
Hg19::chr11:46639436..46639466,-p2@HARBI1
Hg19::chr11:57509422..57509437,-p@chr11:57509422..57509437
-
Hg19::chr11:58345505..58345516,-p9@LPXN
Hg19::chr11:59437000..59437035,-p5@PATL1
Hg19::chr11:62319223..62319248,-p@chr11:62319223..62319248
-
Hg19::chr11:64052561..64052571,-p12@BAD
Hg19::chr11:69065734..69065737,+p@chr11:69065734..69065737
+
Hg19::chr12:106695911..106695928,+p@chr12:106695911..106695928
+
Hg19::chr12:106695930..106695942,+p@chr12:106695930..106695942
+
Hg19::chr12:106695946..106695967,+p@chr12:106695946..106695967
+
Hg19::chr12:12510212..12510225,+p6@LOH12CR1
Hg19::chr12:12510241..12510263,+p4@LOH12CR1
Hg19::chr12:25538611..25538629,+p@chr12:25538611..25538629
+
Hg19::chr12:25538639..25538657,+p@chr12:25538639..25538657
+
Hg19::chr12:50135975..50135991,-p@chr12:50135975..50135991
-
Hg19::chr12:65563183..65563201,-p@chr12:65563183..65563201
-
Hg19::chr12:794806..794815,+p@chr12:794806..794815
+
Hg19::chr13:28195482..28195491,-p4@LNX2
Hg19::chr13:37575209..37575223,-p@chr13:37575209..37575223
-
Hg19::chr13:52026813..52026829,-p4@INTS6
Hg19::chr13:98087050..98087059,-p@chr13:98087050..98087059
-
Hg19::chr14:52314077..52314088,-p@chr14:52314077..52314088
-
Hg19::chr14:55518677..55518700,-p@chr14:55518677..55518700
-
Hg19::chr14:55518707..55518734,-p@chr14:55518707..55518734
-
Hg19::chr14:64971288..64971316,-p2@ZBTB25
Hg19::chr14:64971346..64971357,-p9@ZBTB25
Hg19::chr14:64971893..64971928,-p8@ZBTB25
Hg19::chr14:75642741..75642766,+p@chr14:75642741..75642766
+
Hg19::chr14:75642917..75642942,+p@chr14:75642917..75642942
+
Hg19::chr14:90849734..90849772,+p2@BC039305
Hg19::chr14:94547495..94547508,-p2@DDX24
Hg19::chr15:50978554..50978560,+p@chr15:50978554..50978560
+
Hg19::chr15:52471696..52471707,+p@chr15:52471696..52471707
+
Hg19::chr15:72767490..72767526,-p1@AK026340
Hg19::chr15:83478370..83478426,+p1@WHAMM
Hg19::chr15:83478446..83478468,+p2@WHAMM
Hg19::chr15:90809334..90809354,+p7@NGRN
Hg19::chr16:2041391..2041393,+p@chr16:2041391..2041393
+
Hg19::chr16:68298781..68298792,-p@chr16:68298781..68298792
-
Hg19::chr17:38717290..38717301,+p@chr17:38717290..38717301
+
Hg19::chr17:38717306..38717321,+p@chr17:38717306..38717321
+
Hg19::chr17:41322948..41322969,-p@chr17:41322948..41322969
-
Hg19::chr17:79819420..79819433,-p@chr17:79819420..79819433
-
Hg19::chr17:80255928..80255943,-p@chr17:80255928..80255943
-
Hg19::chr17:80255969..80255980,-p@chr17:80255969..80255980
-
Hg19::chr18:11851018..11851036,+p7@CHMP1B
Hg19::chr18:71815135..71815173,+p@chr18:71815135..71815173
+
Hg19::chr19:10341278..10341304,+p@chr19:10341278..10341304
+
Hg19::chr19:10347101..10347110,+p@chr19:10347101..10347110
+
Hg19::chr19:10347111..10347120,+p@chr19:10347111..10347120
+
Hg19::chr19:14486179..14486197,+p@chr19:14486179..14486197
+
Hg19::chr19:37095638..37095647,-p@chr19:37095638..37095647
-
Hg19::chr19:37095841..37095855,+p2@ZNF382
Hg19::chr19:39881431..39881443,+p@chr19:39881431..39881443
+
Hg19::chr19:40790530..40790546,+p@chr19:40790530..40790546
+
Hg19::chr19:40790569..40790585,+p@chr19:40790569..40790585
+
Hg19::chr1:112298075..112298090,-p3@FAM212B
Hg19::chr1:115054310..115054326,+p@chr1:115054310..115054326
+
Hg19::chr1:14029343..14029381,-p@chr1:14029343..14029381
-
Hg19::chr1:14076759..14076771,+p@chr1:14076759..14076771
+
Hg19::chr1:153606799..153606818,-p8@S100A13
Hg19::chr1:156066892..156066941,-p@chr1:156066892..156066941
-
Hg19::chr1:156067106..156067143,+p1@AK123652
Hg19::chr1:171455154..171455177,-p2@BC007549
Hg19::chr1:186344666..186344694,+p4@C1orf27
Hg19::chr1:22109734..22109790,+p@chr1:22109734..22109790
+
Hg19::chr1:2232091..2232125,+p@chr1:2232091..2232125
+
Hg19::chr1:22352338..22352353,-p@chr1:22352338..22352353
-
Hg19::chr1:228327553..228327587,-p@chr1:228327553..228327587
-
Hg19::chr1:234744958..234745002,-p8@IRF2BP2
Hg19::chr1:234745050..234745097,-p1@IRF2BP2
Hg19::chr1:236959047..236959062,-p@chr1:236959047..236959062
-
Hg19::chr20:23330784..23330836,+p@chr20:23330784..23330836
+
Hg19::chr20:43992000..43992015,-p@chr20:43992000..43992015
-
Hg19::chr20:5591145..5591173,+p@chr20:5591145..5591173
+
Hg19::chr21:30398882..30398888,+p@chr21:30398882..30398888
+
Hg19::chr21:43640357..43640399,-p@chr21:43640357..43640399
-
Hg19::chr22:39097378..39097392,-p10@JOSD1
Hg19::chr22:39097393..39097425,-p7@JOSD1
Hg19::chr22:42336157..42336166,-p8@CENPM
Hg19::chr22:42336209..42336228,-p3@CENPM
Hg19::chr22:50629950..50629967,-p@chr22:50629950..50629967
-
Hg19::chr2:113033704..113033722,-p@chr2:113033704..113033722
-
Hg19::chr2:122406191..122406211,+p@chr2:122406191..122406211
+
Hg19::chr2:201828138..201828160,+p1@ENST00000332935
Hg19::chr2:202123105..202123116,-p@chr2:202123105..202123116
-
Hg19::chr2:220144408..220144433,-p@chr2:220144408..220144433
-
Hg19::chr2:232574974..232574995,-p@chr2:232574974..232574995
-
Hg19::chr2:27435537..27435561,-p7@SLC5A6
Hg19::chr2:27435611..27435624,-p8@SLC5A6
Hg19::chr2:27435634..27435665,-p6@SLC5A6
Hg19::chr2:86790191..86790209,+p@chr2:86790191..86790209
+
Hg19::chr3:107810152..107810193,+p@chr3:107810152..107810193
+
Hg19::chr3:13522103..13522125,-p@chr3:13522103..13522125
-
Hg19::chr3:135914615..135914701,-p3@MSL2
Hg19::chr3:14693622..14693632,-p@chr3:14693622..14693632
-
Hg19::chr3:179041570..179041596,-p@chr3:179041570..179041596
-
Hg19::chr3:179041606..179041620,-p@chr3:179041606..179041620
-
Hg19::chr3:179041625..179041643,-p@chr3:179041625..179041643
-
Hg19::chr3:23986876..23986885,+p4@NR1D2
Hg19::chr3:71114290..71114305,+p@chr3:71114290..71114305
+
Hg19::chr3:71115673..71115676,+p@chr3:71115673..71115676
+
Hg19::chr4:149363856..149363872,+p@chr4:149363856..149363872
+
Hg19::chr4:149364278..149364307,-p@chr4:149364278..149364307
-
Hg19::chr4:26862558..26862576,+p1@STIM2
Hg19::chr4:26863338..26863342,+p@chr4:26863338..26863342
+
Hg19::chr4:76598867..76598882,+p@chr4:76598867..76598882
+
Hg19::chr4:78783782..78783819,-p@chr4:78783782..78783819
-
Hg19::chr5:179248528..179248568,-p@chr5:179248528..179248568
-
Hg19::chr5:32312391..32312420,+p@chr5:32312391..32312420
+
Hg19::chr5:34839130..34839157,-p@chr5:34839130..34839157
-
Hg19::chr5:54603850..54603853,+p5@SKIV2L2
Hg19::chr5:98265261..98265280,-p@chr5:98265261..98265280
-
Hg19::chr6:109762344..109762356,-p5@PPIL6
Hg19::chr6:119216251..119216300,-p@chr6:119216251..119216300
-
Hg19::chr6:136610575..136610598,+p@chr6:136610575..136610598
+
Hg19::chr6:159239993..159240009,+p@chr6:159239993..159240009
+
Hg19::chr6:159290473..159290489,-p@chr6:159290473..159290489
-
Hg19::chr6:159290503..159290512,-p@chr6:159290503..159290512
-
Hg19::chr6:26285546..26285558,+p@chr6:26285546..26285558
+
Hg19::chr6:28048860..28048889,-p2@uc003nkf.2
Hg19::chr6:292408..292424,-p@chr6:292408..292424
-
Hg19::chr6:32941036..32941050,-p@chr6:32941036..32941050
-
Hg19::chr6:4021464..4021476,+p6@PRPF4B
Hg19::chr6:7389966..7389993,-p1@CAGE1
Hg19::chr6:87864744..87864763,+p@chr6:87864744..87864763
+
Hg19::chr7:108209925..108209941,-p2@THAP5
Hg19::chr7:130792816..130792827,-p2@ENST00000423414
Hg19::chr7:140714541..140714552,+p@chr7:140714541..140714552
+
Hg19::chr7:2550533..2550560,-p@chr7:2550533..2550560
-
Hg19::chr7:35840534..35840564,-p2@ENST00000424194
Hg19::chr8:104427080..104427102,+p3@DCAF13
Hg19::chr8:81398511..81398523,+p8@ZBTB10
Hg19::chr8:81398538..81398549,+p14@ZBTB10
Hg19::chr8:81398552..81398563,+p13@ZBTB10
Hg19::chr9:102583633..102583644,+p8@NR4A3
Hg19::chr9:102669358..102669378,-p1@LOC441461
Hg19::chr9:132769827..132769840,-p@chr9:132769827..132769840
-
Hg19::chrX:110924483..110924500,+p2@ALG13
Hg19::chrX:17755245..17755252,+p6@SCML1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0043231intracellular membrane-bound organelle0.0226705607721863
GO:0043227membrane-bound organelle0.0226705607721863
GO:0032235negative regulation of calcium ion transport via store-operated calcium channel0.0400800066572294
GO:0004577N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity0.0400800066572294
GO:0016070RNA metabolic process0.0400800066572294
GO:0005634nucleus0.0460791453004554
GO:0032234regulation of calcium ion transport via store-operated calcium channel0.0460791453004554
GO:0008523sodium-dependent multivitamin transmembrane transporter activity0.0460791453004554
GO:0043169cation binding0.0495674418916741



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
leukocyte1.18e-78136
hematopoietic stem cell2.21e-61168
angioblastic mesenchymal cell2.21e-61168
hematopoietic lineage restricted progenitor cell2.30e-60120
nongranular leukocyte1.44e-59115
hematopoietic cell7.42e-59177
hematopoietic oligopotent progenitor cell2.47e-53161
hematopoietic multipotent progenitor cell2.47e-53161
lymphoid lineage restricted progenitor cell1.93e-4152
lymphocyte1.95e-4053
common lymphoid progenitor1.95e-4053
nucleate cell1.53e-3855
myeloid leukocyte3.11e-2572
classical monocyte1.13e-2442
CD14-positive, CD16-negative classical monocyte1.13e-2442
lymphocyte of B lineage6.93e-2324
pro-B cell6.93e-2324
granulocyte monocyte progenitor cell8.83e-2167
defensive cell1.34e-2048
phagocyte1.34e-2048
macrophage dendritic cell progenitor1.11e-1861
myeloid lineage restricted progenitor cell4.52e-1866
myeloid cell1.25e-17108
common myeloid progenitor1.25e-17108
mesenchymal cell1.28e-17354
mature alpha-beta T cell7.13e-1718
alpha-beta T cell7.13e-1718
immature T cell7.13e-1718
mature T cell7.13e-1718
immature alpha-beta T cell7.13e-1718
connective tissue cell7.27e-17361
intermediate monocyte9.02e-179
CD14-positive, CD16-positive monocyte9.02e-179
monopoietic cell2.03e-1659
monocyte2.03e-1659
monoblast2.03e-1659
promonocyte2.03e-1659
B cell2.44e-1514
T cell9.71e-1525
pro-T cell9.71e-1525
motile cell3.18e-14386
CD4-positive, alpha-beta T cell2.60e-136
stem cell8.46e-12441
multi fate stem cell4.84e-11427
somatic stem cell1.31e-10433
granulocyte5.53e-098
blood cell2.74e-0811
stuff accumulating cell3.69e-0887
CD8-positive, alpha-beta T cell6.06e-0811
natural killer cell9.72e-083
pro-NK cell9.72e-083
dendritic cell9.83e-0810
naive T cell2.50e-073
basophil3.19e-073
single nucleate cell3.76e-073
mononuclear cell3.76e-073
plasmacytoid dendritic cell7.43e-073
Uber Anatomy
Ontology termp-valuen
hematopoietic system2.32e-1998
blood island2.32e-1998
bone marrow1.23e-1876
bone element1.35e-1682
hemolymphoid system1.48e-16108
connective tissue7.71e-16371
immune system9.13e-1693
skeletal element2.59e-1490
skeletal system5.37e-12100


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.13.94459
MA0004.10.277155
MA0006.13.50363
MA0007.10.493714
MA0009.10.043756
MA0014.12.49147
MA0017.10.0314916
MA0019.10.048398
MA0024.13.48174
MA0025.10.297134
MA0027.11.2818
MA0028.11.18549
MA0029.10.104905
MA0030.10.73961
MA0031.10.166502
MA0038.10.419042
MA0040.10.108691
MA0041.10.0627897
MA0042.10.365035
MA0043.10.168136
MA0046.10.0409148
MA0048.11.73821
MA0050.10.367934
MA0051.10.257592
MA0052.10.111236
MA0055.10.226189
MA0056.10
MA0057.10.557244
MA0058.10.0898452
MA0059.10.146405
MA0060.10.697443
MA0061.14.48399
MA0063.10
MA0066.10.0752136
MA0067.10.527439
MA0068.10.327195
MA0069.11.90713
MA0070.10.963074
MA0071.10.0488448
MA0072.10.143581
MA0073.14.63255
MA0074.10.591374
MA0076.11.59981
MA0077.10.137748
MA0078.10.0771559
MA0081.10.772793
MA0083.10.174178
MA0084.10.298328
MA0087.10.0355353
MA0088.10.228283
MA0089.10
MA0090.10.0785385
MA0091.10.0511661
MA0092.10.586564
MA0093.10.149347
MA0095.10
MA0098.10
MA0100.10.296209
MA0101.13.28765
MA0103.10.26423
MA0105.13.10416
MA0106.10.778551
MA0107.13.96466
MA0108.20.0613141
MA0109.10
MA0111.10.0498247
MA0113.10.127754
MA0114.10.133927
MA0115.10.137131
MA0116.10.511179
MA0117.11.1808
MA0119.11.26523
MA0122.10.487992
MA0124.10.116998
MA0125.10.0812931
MA0130.10
MA0131.11.83582
MA0132.10
MA0133.10
MA0135.10.194101
MA0136.10.637897
MA0139.10.783302
MA0140.10.64963
MA0141.10.0226044
MA0142.10.276862
MA0143.10.242669
MA0144.10.72147
MA0145.10.0885127
MA0146.11.97967
MA0147.10.668203
MA0148.10.0296341
MA0149.10.000479499
MA0062.21.93549
MA0035.20.304691
MA0039.21.63353
MA0138.20.506569
MA0002.20.033117
MA0137.20.286227
MA0104.21.1437
MA0047.20.194816
MA0112.20.223764
MA0065.20.372525
MA0150.10.426446
MA0151.10
MA0152.10.109274
MA0153.10.260072
MA0154.10.721769
MA0155.11.12256
MA0156.10.13456
MA0157.10.110922
MA0158.10
MA0159.10.0452899
MA0160.10.153108
MA0161.10
MA0162.12.37127
MA0163.10.410202
MA0164.10.264818
MA0080.20.551481
MA0018.21.36479
MA0099.20.199546
MA0079.22.71473
MA0102.20.324981
MA0258.10.0804608
MA0259.12.19796
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
BATF#10538142.335679623919530.002878682140648490.0155751273940417
BCL11A#53335214.080538062847595.2511043391141e-083.34402491507766e-06
BCLAF1#9774213.114421916524374.03512786888394e-060.000130230135815318
CCNT2#905532.300127969719311.25938978273084e-091.14472941269475e-07
CEBPB#1051382.074682258776327.83768942036453e-060.000222193389080741
CHD2#1106312.196333615463172.27398166442848e-050.000496638166146478
CTCF#10664391.431849305136480.01052974619356330.0389638663091538
CTCFL#140690152.028747365648050.007423901148749450.0306593701638753
E2F1#1869782.621755881921831.24781699294015e-182.87050129792238e-16
E2F4#1874262.25595594655757.61611626945388e-050.00117543899374242
E2F6#1876702.405485624786422.93846425287787e-144.87127409692558e-12
EBF1#1879533.233169471699712.09625720323142e-153.82078544586887e-13
EGR1#1958612.084102224543961.79297147894818e-091.55657646126242e-07
ELF1#1997782.274874251965675.7152335289359e-151.001498782766e-12
ELK4#2005182.001659382550850.003928365679392650.0191395121846468
EP300#2033371.716683862125060.0005662387943254660.00482951518501897
ETS1#2113312.065695812248447.2766760312596e-050.00114298205448747
FOSL1#8061102.720108199751580.004066890664794510.0194532378006996
FOXA1#3169251.897503381744080.001384524142436460.00901204842081155
FOXA2#3170142.361825291351460.002605638276908640.0144075739094696
GABPB1#2553492.372030876526892.62131201059841e-092.20780004092651e-07
GATA1#2623282.60060704127682.80000313384948e-069.68309693033463e-05
GATA2#2624282.444233483147348.99674239533548e-060.000242167726553207
GTF2F1#2962292.53048058510943.07508476512804e-060.0001036664873419
HEY1#23462812.241431469120292.30184521165727e-154.17365298715753e-13
HMGN3#9324452.52078525719712.37147513154205e-092.01853701110938e-07
IRF1#3659351.830826927224220.0002512526594229610.00270660923130218
IRF4#3662172.551689833388020.0003858212139473980.00377751774289418
JUND#3727361.724711656899710.0006302923747916220.00518323664022537
MAX#4149492.165583698228425.16774763445849e-083.2969724813391e-06
MEF2A#4205283.59459222924683.70005731333055e-093.04036416795381e-07
MEF2C#4208123.395453793914310.0002469990741823890.00268516043598777
MXI1#4601362.456277935858462.95617199405092e-071.49510724884593e-05
MYC#4609642.289219450568518.30237102636846e-121.0434312005089e-09
NFKB1#4790732.744031712096923.19606815824649e-187.16296485792071e-16
NRF1#4899211.756273071246090.008209660282979380.0324051819907813
PAX5#5079652.969327120044921.57737195449797e-173.33480059829582e-15
PBX3#5090243.602385647136025.45001790452392e-083.44757371248076e-06
POLR2A#54301372.015075925948337.75923204418568e-353.78675904421826e-32
POU2F2#5452573.555130625283041.37056967284061e-183.1390553960921e-16
REST#5978312.048978699999798.45781696355461e-050.00126878188143735
RFX5#5993211.732918680623950.00947988673547170.0357180955577737
SIN3A#25942732.704442363407577.31809245138454e-181.59894196136015e-15
SIRT6#5154855.261589177740580.002808447246561120.0153759395042775
SMARCA4#659766.442434382515950.0003780750412017480.00374912449943689
SMARCB1#6598344.250632442187345.64946383074129e-138.18341682411636e-11
SMARCC1#6599113.289705154218810.0005825874835430680.00488713688303249
SP1#6667602.341800566359272.27376308152793e-112.71704282004228e-09
SPI1#6688492.753505835052151.45592218163785e-111.78678092512427e-09
SREBF1#672082.575662983040450.01330426815193680.0470389810596203
SRF#6722242.268029303370050.0001380630973190090.00180397495569873
STAT1#6772172.411041009947850.0007274123942663630.00580191103137198
STAT2#6773104.470121314139779.43409124546188e-050.0013678842920794
TAF1#68721062.427143193760282.6236204766056e-268.83897738568427e-24
TAF7#6879272.114334752965380.0001594853186791430.00200005850114446
TBP#6908862.183440267741715.6593692866756e-161.08850620429303e-13
TCF12#6938362.622196825196655.88635663866183e-083.66586285620276e-06
TFAP2C#7022261.924931122303880.0008913595599840360.00663573320159475
USF1#7391351.525016950015610.006147831416625260.0271800095382012
USF2#7392232.046716026415070.0008128318377151260.00619373590392018
YY1#7528561.883736725971344.52099889052568e-072.14427158550232e-05
ZBTB7A#51341482.417066073822212.21707365907216e-091.89638784504371e-07
ZEB1#6935343.93292252463354.79674878610386e-126.27779005603886e-10
ZNF143#7702191.756963386933770.01179509707021820.042973143895783
ZNF263#10127553.097269109832793.03058766825208e-155.46652064740205e-13



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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