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Coexpression cluster:C112: Difference between revisions

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{{Coexpression_clusters
{
|full_id=C112_gastric_pancreas_temporal_duodenum_small_extraskeletal_adrenal
 

Latest revision as of 10:34, 17 September 2013


Full id: C112_gastric_pancreas_temporal_duodenum_small_extraskeletal_adrenal



Phase1 CAGE Peaks

Hg19::chr10:114886432..114886455,+p20@TCF7L2
Hg19::chr10:114886477..114886480,+p60@TCF7L2
Hg19::chr10:29104359..29104365,-p1@BC036238
Hg19::chr10:29115171..29115179,-p@chr10:29115171..29115179
-
Hg19::chr10:29115341..29115355,-p@chr10:29115341..29115355
-
Hg19::chr10:54082425..54082451,+p@chr10:54082425..54082451
+
Hg19::chr10:54141655..54141664,+p@chr10:54141655..54141664
+
Hg19::chr11:111385417..111385459,-p@chr11:111385417..111385459
-
Hg19::chr11:111385487..111385494,+p4@C11orf88
Hg19::chr11:111385497..111385541,+p1@C11orf88
Hg19::chr11:111385544..111385565,+p3@C11orf88
Hg19::chr11:111385569..111385587,+p2@C11orf88
Hg19::chr11:111385680..111385681,+p6@C11orf88
Hg19::chr11:111385685..111385694,+p5@C11orf88
Hg19::chr11:31832207..31832226,-p12@PAX6
Hg19::chr12:66276327..66276349,-p6@ENST00000439236
Hg19::chr12:66444639..66444651,-p@chr12:66444639..66444651
-
Hg19::chr12:66444663..66444670,-p@chr12:66444663..66444670
-
Hg19::chr12:89744460..89744485,+p3@LOC100131490
Hg19::chr12:91451547..91451586,-p3@KERA
Hg19::chr12:91451645..91451650,-p8@KERA
Hg19::chr13:23115519..23115567,+p@chr13:23115519..23115567
+
Hg19::chr13:23216072..23216074,-p@chr13:23216072..23216074
-
Hg19::chr13:23218856..23218862,-p@chr13:23218856..23218862
-
Hg19::chr13:23367690..23367696,+p@chr13:23367690..23367696
+
Hg19::chr13:23404401..23404405,+p@chr13:23404401..23404405
+
Hg19::chr13:24099079..24099085,+p@chr13:24099079..24099085
+
Hg19::chr13:72440434..72440479,-p6@DACH1
Hg19::chr13:72440693..72440706,-p15@DACH1
Hg19::chr13:72440726..72440736,-p19@DACH1
Hg19::chr13:72440745..72440757,-p18@DACH1
Hg19::chr13:72440765..72440769,-p25@DACH1
Hg19::chr13:72440772..72440847,-p5@DACH1
Hg19::chr13:72440880..72440895,-p7@DACH1
Hg19::chr13:72441047..72441060,-p11@DACH1
Hg19::chr13:80760013..80760054,+p@chr13:80760013..80760054
+
Hg19::chr13:80930487..80930491,+p@chr13:80930487..80930491
+
Hg19::chr13:80973595..80973596,+p@chr13:80973595..80973596
+
Hg19::chr13:80974616..80974617,+p@chr13:80974616..80974617
+
Hg19::chr15:36402459..36402465,-p@chr15:36402459..36402465
-
Hg19::chr15:36529433..36529436,-p@chr15:36529433..36529436
-
Hg19::chr17:46262248..46262256,-p@chr17:46262248..46262256
-
Hg19::chr17:46262278..46262285,-p@chr17:46262278..46262285
-
Hg19::chr17:46262596..46262608,-p@chr17:46262596..46262608
-
Hg19::chr17:46262677..46262688,-p@chr17:46262677..46262688
-
Hg19::chr17:63705566..63705573,-p@chr17:63705566..63705573
-
Hg19::chr17:68153707..68153744,+p@chr17:68153707..68153744
+
Hg19::chr17:68164752..68164760,+p5@KCNJ2
Hg19::chr17:68365063..68365071,-p@chr17:68365063..68365071
-
Hg19::chr17:68531786..68531797,-p@chr17:68531786..68531797
-
Hg19::chr18:25664742..25664747,-p@chr18:25664742..25664747
-
Hg19::chr18:25664756..25664765,-p@chr18:25664756..25664765
-
Hg19::chr18:25664876..25664887,-p@chr18:25664876..25664887
-
Hg19::chr18:25664902..25664907,-p@chr18:25664902..25664907
-
Hg19::chr18:26665245..26665249,+p@chr18:26665245..26665249
+
Hg19::chr18:26719107..26719110,+p@chr18:26719107..26719110
+
Hg19::chr18:30350270..30350285,-p1@KLHL14
Hg19::chr18:30350293..30350305,-p2@KLHL14
Hg19::chr18:30350548..30350560,-p1@AB385461
Hg19::chr18:30470140..30470150,+p@chr18:30470140..30470150
+
Hg19::chr18:3582085..3582094,-p@chr18:3582085..3582094
-
Hg19::chr18:3582140..3582180,-p@chr18:3582140..3582180
-
Hg19::chr18:3582190..3582205,-p@chr18:3582190..3582205
-
Hg19::chr1:168215739..168215744,-p@chr1:168215739..168215744
-
Hg19::chr1:187230638..187230648,+p@chr1:187230638..187230648
+
Hg19::chr1:187230650..187230660,+p@chr1:187230650..187230660
+
Hg19::chr1:187230669..187230677,+p@chr1:187230669..187230677
+
Hg19::chr1:219619827..219619873,+p@chr1:219619827..219619873
+
Hg19::chr1:82563868..82563872,-p@chr1:82563868..82563872
-
Hg19::chr1:82564018..82564041,-p@chr1:82564018..82564041
-
Hg19::chr1:82564065..82564076,-p@chr1:82564065..82564076
-
Hg19::chr1:82564127..82564132,-p@chr1:82564127..82564132
-
Hg19::chr20:50479417..50479427,-p2@ENST00000438154
Hg19::chr2:163003953..163003967,-p2@GCG
Hg19::chr2:163003975..163003985,-p5@GCG
Hg19::chr2:163003987..163003999,-p4@GCG
Hg19::chr2:163004022..163004031,-p8@GCG
Hg19::chr2:163008749..163008765,-p1@GCG
Hg19::chr2:163008903..163008907,-p9@GCG
Hg19::chr2:163008923..163008930,-p6@GCG
Hg19::chr2:163138115..163138124,-p14@IFIH1
Hg19::chr2:163138982..163138987,-p@chr2:163138982..163138987
-
Hg19::chr2:163139078..163139089,-p@chr2:163139078..163139089
-
Hg19::chr2:163139094..163139101,-p@chr2:163139094..163139101
-
Hg19::chr2:163174639..163174649,-p12@IFIH1
Hg19::chr2:171573417..171573466,+p@chr2:171573417..171573466
+
Hg19::chr2:175412745..175412752,-p@chr2:175412745..175412752
-
Hg19::chr2:178517296..178517300,+p@chr2:178517296..178517300
+
Hg19::chr2:178554647..178554660,+p@chr2:178554647..178554660
+
Hg19::chr2:187455359..187455362,-p@chr2:187455359..187455362
-
Hg19::chr2:192787304..192787309,+p1@ENST00000428980
Hg19::chr3:109035256..109035277,-p2@DPPA2
Hg19::chr3:29222527..29222532,+p@chr3:29222527..29222532
+
Hg19::chr3:29224330..29224339,+p@chr3:29224330..29224339
+
Hg19::chr3:77033393..77033407,+p@chr3:77033393..77033407
+
Hg19::chr3:77060738..77060739,+p@chr3:77060738..77060739
+
Hg19::chr3:77060770..77060781,+p@chr3:77060770..77060781
+
Hg19::chr3:77060783..77060789,+p@chr3:77060783..77060789
+
Hg19::chr3:77088656..77088667,+p20@ROBO2
Hg19::chr3:82104160..82104182,-p@chr3:82104160..82104182
-
Hg19::chr4:108076638..108076680,-p@chr4:108076638..108076680
-
Hg19::chr4:127876508..127876525,-p4@ENST00000515428
Hg19::chr4:127876527..127876545,-p2@ENST00000515428
Hg19::chr4:127876550..127876557,-p5@ENST00000515428
Hg19::chr4:127877921..127877928,-p@chr4:127877921..127877928
-
Hg19::chr4:138450916..138450926,-p@chr4:138450916..138450926
-
Hg19::chr4:139026794..139026805,+p1@ENST00000514752
Hg19::chr4:139026816..139026817,+p4@ENST00000514752
Hg19::chr4:139026882..139026889,+p3@ENST00000514752
Hg19::chr4:158966213..158966216,+p@chr4:158966213..158966216
+
Hg19::chr4:158980656..158980671,-p@chr4:158980656..158980671
-
Hg19::chr4:158980701..158980716,-p@chr4:158980701..158980716
-
Hg19::chr4:158980718..158980727,-p@chr4:158980718..158980727
-
Hg19::chr4:20270462..20270471,+p@chr4:20270462..20270471
+
Hg19::chr4:86844857..86844866,+p37@ARHGAP24
Hg19::chr4:90816544..90816555,+p9@MMRN1
Hg19::chr5:124298657..124298672,+p@chr5:124298657..124298672
+
Hg19::chr5:124298737..124298741,+p@chr5:124298737..124298741
+
Hg19::chr5:124468141..124468176,-p@chr5:124468141..124468176
-
Hg19::chr5:127547744..127547762,-p@chr5:127547744..127547762
-
Hg19::chr5:127547772..127547782,-p@chr5:127547772..127547782
-
Hg19::chr5:127547788..127547810,-p@chr5:127547788..127547810
-
Hg19::chr5:127547948..127547958,-p@chr5:127547948..127547958
-
Hg19::chr5:127805756..127805778,+p@chr5:127805756..127805778
+
Hg19::chr5:27927276..27927286,+p@chr5:27927276..27927286
+
Hg19::chr5:28404451..28404458,+p@chr5:28404451..28404458
+
Hg19::chr5:28614667..28614692,+p@chr5:28614667..28614692
+
Hg19::chr5:44388908..44388918,-p11@FGF10
Hg19::chr5:44389148..44389161,-p8@FGF10
Hg19::chr5:44389252..44389259,-p15@FGF10
Hg19::chr5:44389319..44389328,-p14@FGF10
Hg19::chr6:121801606..121801619,-p@chr6:121801606..121801619
-
Hg19::chr6:121938611..121938612,-p@chr6:121938611..121938612
-
Hg19::chr6:121947097..121947100,-p@chr6:121947097..121947100
-
Hg19::chr6:121950306..121950309,-p@chr6:121950306..121950309
-
Hg19::chr6:121951983..121951986,+p@chr6:121951983..121951986
+
Hg19::chr6:122213434..122213435,-p@chr6:122213434..122213435
-
Hg19::chr6:122213456..122213459,-p@chr6:122213456..122213459
-
Hg19::chr6:122213466..122213473,-p@chr6:122213466..122213473
-
Hg19::chr6:125535544..125535572,+p@chr6:125535544..125535572
+
Hg19::chr6:3226653..3226665,-p6@TUBB2B
Hg19::chr6:50237117..50237124,-p@chr6:50237117..50237124
-
Hg19::chr6:56569442..56569469,-p@chr6:56569442..56569469
-
Hg19::chr6:80228516..80228529,-p8@LCA5
Hg19::chr6:80246963..80246975,+p@chr6:80246963..80246975
+
Hg19::chr6:80247193..80247200,-p7@LCA5
Hg19::chr6:94129359..94129404,-p3@EPHA7
Hg19::chr7:13045950..13045959,+p@chr7:13045950..13045959
+
Hg19::chr7:15639445..15639451,-p@chr7:15639445..15639451
-
Hg19::chr7:20825232..20825239,-p5@AB464710
Hg19::chr7:20825258..20825272,-p2@AB464710
Hg19::chr7:20825278..20825288,-p3@AB464710
Hg19::chr7:20825326..20825336,-p4@AB464710
Hg19::chr7:20825374..20825388,-p1@AB464710
Hg19::chr7:20826148..20826154,-p4@SP8
Hg19::chr7:21469733..21469741,+p@chr7:21469733..21469741
+
Hg19::chr7:27169555..27169590,+p1@ENST00000518848
Hg19::chr7:83303630..83303638,+p@chr7:83303630..83303638
+
Hg19::chr7:83776852..83776860,+p@chr7:83776852..83776860
+
Hg19::chr8:107669952..107669963,+p34@OXR1
Hg19::chr8:116462568..116462574,-p@chr8:116462568..116462574
-
Hg19::chr8:16859835..16859861,-p1@FGF20
Hg19::chr8:16943825..16943841,+p@chr8:16943825..16943841
+
Hg19::chr8:16943957..16943965,+p@chr8:16943957..16943965
+
Hg19::chr8:32504790..32504800,+p35@NRG1
Hg19::chr8:32504816..32504828,+p37@NRG1
Hg19::chr9:12325689..12325694,-p@chr9:12325689..12325694
-
Hg19::chr9:75772924..75772957,+p17@ANXA1
Hg19::chrX:133371199..133371244,+p1@CCDC160
Hg19::chrX:133371248..133371261,+p3@CCDC160
Hg19::chrX:133371274..133371290,+p2@CCDC160
Hg19::chrY:20835552..20835555,+p1@OFD1P6Y


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005515protein binding0.000666432550302563
GO:0048869cellular developmental process0.000666432550302563
GO:0030154cell differentiation0.000666432550302563
GO:0032502developmental process0.000684302246634942
GO:0030111regulation of Wnt receptor signaling pathway0.0101269456508289
GO:0032501multicellular organismal process0.0110569204705015
GO:0007275multicellular organismal development0.011313664961938
GO:0050767regulation of neurogenesis0.011313664961938
GO:0030182neuron differentiation0.011313664961938
GO:0005102receptor binding0.011313664961938
GO:0009653anatomical structure morphogenesis0.011313664961938
GO:0016043cellular component organization and biogenesis0.011313664961938
GO:0050793regulation of developmental process0.011313664961938
GO:0048699generation of neurons0.011313664961938
GO:0008083growth factor activity0.011313664961938
GO:0009605response to external stimulus0.011313664961938
GO:0022008neurogenesis0.011313664961938
GO:0021902commitment of a neuronal cell to a specific type of neuron in the forebrain0.011313664961938
GO:0030177positive regulation of Wnt receptor signaling pathway0.011313664961938
GO:0050674urothelial cell proliferation0.011313664961938
GO:0050675regulation of urothelial cell proliferation0.011313664961938
GO:0021877forebrain neuron fate commitment0.011313664961938
GO:0050677positive regulation of urothelial cell proliferation0.011313664961938
GO:0048468cell development0.0113869173760949
GO:0007610behavior0.0113869173760949
GO:0045596negative regulation of cell differentiation0.0113869173760949
GO:0048856anatomical structure development0.0126056496574786
GO:0045165cell fate commitment0.0126056496574786
GO:0008283cell proliferation0.0128047057897627
GO:0051093negative regulation of developmental process0.0135501785815822
GO:0007423sensory organ development0.0135501785815822
GO:0021879forebrain neuron differentiation0.0135501785815822
GO:0021872generation of neurons in the forebrain0.0135501785815822
GO:0007435salivary gland morphogenesis0.0135501785815822
GO:0021798forebrain dorsal/ventral pattern formation0.0135501785815822
GO:0022612gland morphogenesis0.0135501785815822
GO:0050482arachidonic acid secretion0.0135501785815822
GO:0003002regionalization0.0135501785815822
GO:0009887organ morphogenesis0.0135501785815822
GO:0048286alveolus development0.0181443336156858
GO:0019834phospholipase A2 inhibitor activity0.0181443336156858
GO:0030297transmembrane receptor protein tyrosine kinase activator activity0.0181443336156858
GO:0008046axon guidance receptor activity0.0181443336156858
GO:0048731system development0.0193292871414374
GO:0007409axonogenesis0.0193292871414374
GO:0048667neuron morphogenesis during differentiation0.0193292871414374
GO:0048812neurite morphogenesis0.0193292871414374
GO:0046717acid secretion0.0193292871414374
GO:0048260positive regulation of receptor-mediated endocytosis0.0193292871414374
GO:0021871forebrain regionalization0.0193292871414374
GO:0007431salivary gland development0.0193292871414374
GO:0030971receptor tyrosine kinase binding0.0193292871414374
GO:0030949positive regulation of vascular endothelial growth factor receptor signaling pathway0.0193292871414374
GO:0065007biological regulation0.0193292871414374
GO:0007389pattern specification process0.0193292871414374
GO:0000904cellular morphogenesis during differentiation0.0194054358599516
GO:0042127regulation of cell proliferation0.0194054358599516
GO:0032989cellular structure morphogenesis0.0197832759713202
GO:0000902cell morphogenesis0.0197832759713202
GO:0031175neurite development0.020934182437169
GO:0009950dorsal/ventral axis specification0.0209615622830589
GO:0030947regulation of vascular endothelial growth factor receptor signaling pathway0.0209615622830589
GO:0007420brain development0.0211110636785166
GO:0042330taxis0.0215622815095724
GO:0006935chemotaxis0.0215622815095724
GO:0045595regulation of cell differentiation0.0215622815095724
GO:0016055Wnt receptor signaling pathway0.0215622815095724
GO:0048514blood vessel morphogenesis0.0216542255060573
GO:0009986cell surface0.0216542255060573
GO:0030296protein tyrosine kinase activator activity0.0216542255060573
GO:0042462eye photoreceptor cell development0.0216542255060573
GO:0015272ATP-activated inward rectifier potassium channel activity0.0216542255060573
GO:0048666neuron development0.021871863817229
GO:0048523negative regulation of cellular process0.021871863817229
GO:0048513organ development0.021871863817229
GO:0021543pallium development0.021871863817229
GO:0010092specification of organ identity0.021871863817229
GO:0001754eye photoreceptor cell differentiation0.021871863817229
GO:0048566embryonic gut development0.021871863817229
GO:0005104fibroblast growth factor receptor binding0.021871863817229
GO:0001759induction of an organ0.021871863817229
GO:0001974blood vessel remodeling0.021871863817229
GO:0048259regulation of receptor-mediated endocytosis0.021871863817229
GO:0001568blood vessel development0.021871863817229
GO:0001944vasculature development0.0221309968842317
GO:0048519negative regulation of biological process0.0223114032265178
GO:0005634nucleus0.0223114032265178
GO:0031128induction0.0223114032265178
GO:0035272exocrine system development0.0223114032265178
GO:0045168cell-cell signaling during cell fate commitment0.0223114032265178
GO:0042461photoreceptor cell development0.0223114032265178
GO:0051145smooth muscle cell differentiation0.0223114032265178
GO:0050930induction of positive chemotaxis0.0223114032265178
GO:0042221response to chemical stimulus0.0223114032265178
GO:0007626locomotory behavior0.0234294788141137
GO:0006950response to stress0.0234345336193008
GO:0050926regulation of positive chemotaxis0.0259560297700271
GO:0046530photoreceptor cell differentiation0.0259560297700271
GO:0050927positive regulation of positive chemotaxis0.0259560297700271
GO:0050918positive chemotaxis0.0259560297700271
GO:0032990cell part morphogenesis0.0261868381351817
GO:0048858cell projection morphogenesis0.0261868381351817
GO:0030030cell projection organization and biogenesis0.0261868381351817
GO:0045665negative regulation of neuron differentiation0.0261868381351817
GO:0048565gut development0.0261868381351817
GO:0021983pituitary gland development0.0261868381351817
GO:0050921positive regulation of chemotaxis0.0261868381351817
GO:0021537telencephalon development0.0261868381351817
GO:0048010vascular endothelial growth factor receptor signaling pathway0.0261868381351817
GO:0007169transmembrane receptor protein tyrosine kinase signaling pathway0.0269822242495383
GO:0050920regulation of chemotaxis0.0275485218398447
GO:0021536diencephalon development0.0275485218398447
GO:0030295protein kinase activator activity0.0275485218398447
GO:0007601visual perception0.0289773842701976
GO:0050953sensory perception of light stimulus0.0289773842701976
GO:0050772positive regulation of axonogenesis0.0289773842701976
GO:0008285negative regulation of cell proliferation0.0289773842701976
GO:0007399nervous system development0.03021425911993
GO:0048663neuron fate commitment0.03021425911993
GO:0005625soluble fraction0.03021425911993
GO:0007417central nervous system development0.03021425911993
GO:0009790embryonic development0.03021425911993
GO:0008543fibroblast growth factor receptor signaling pathway0.0331680580880202
GO:0042383sarcolemma0.0331680580880202
GO:0050769positive regulation of neurogenesis0.0331680580880202
GO:0050679positive regulation of epithelial cell proliferation0.0361368433285746
GO:0009798axis specification0.0361368433285746
GO:0045807positive regulation of endocytosis0.0361368433285746
GO:0019209kinase activator activity0.0361368433285746
GO:0001657ureteric bud development0.0369869110297901
GO:0004859phospholipase inhibitor activity0.0369869110297901
GO:0016998cell wall catabolic process0.0369869110297901
GO:0055102lipase inhibitor activity0.0369869110297901
GO:0010382cell wall metabolic process0.0378399979117725
GO:0048568embryonic organ development0.0378399979117725
GO:0007047cell wall organization and biogenesis0.0378399979117725
GO:0007166cell surface receptor linked signal transduction0.0378399979117725
GO:0000060protein import into nucleus, translocation0.0406515262191312
GO:0001533cornified envelope0.0406515262191312
GO:0045229external encapsulating structure organization and biogenesis0.0406515262191312
GO:0043229intracellular organelle0.0408042810139765
GO:0043226organelle0.0408042810139765
GO:0007167enzyme linked receptor protein signaling pathway0.0410990211796084
GO:0001656metanephros development0.0430911822645252
GO:0048592eye morphogenesis0.0447898115022178
GO:0043624cellular protein complex disassembly0.0447898115022178
GO:0005242inward rectifier potassium channel activity0.0447898115022178
GO:0018149peptide cross-linking0.0447898115022178
GO:0050770regulation of axonogenesis0.0447898115022178
GO:0045664regulation of neuron differentiation0.0447898115022178
GO:0042472inner ear morphogenesis0.0458876775950725
GO:0043241protein complex disassembly0.0458876775950725
GO:0005003ephrin receptor activity0.0463540943469556
GO:0032984macromolecular complex disassembly0.0463540943469556
GO:0048754branching morphogenesis of a tube0.0463540943469556
GO:0009953dorsal/ventral pattern formation0.0463540943469556
GO:0001709cell fate determination0.0476904902705381
GO:0030216keratinocyte differentiation0.0487008291420214
GO:0050678regulation of epithelial cell proliferation0.0487008291420214
GO:0042471ear morphogenesis0.0496910683309607
GO:0050789regulation of biological process0.0496910683309607



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br>disease_data<br>

Uber Anatomy
Ontology termp-valuen
stomach5.22e-268
food storage organ5.22e-268
gastrointestinal system4.34e-0925
Disease
Ontology termp-valuen
gastrointestinal system cancer1.43e-1514


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.11.6408e-13
MA0004.10.0880421
MA0006.10.090674
MA0007.10.034381
MA0009.10.523217
MA0014.16.16736e-13
MA0017.10.0410081
MA0019.10.063436
MA0024.10.0122036
MA0025.10.0635465
MA0027.11.21268
MA0028.10.00547973
MA0029.11.22888
MA0030.10.166157
MA0031.10.399876
MA0038.10.777194
MA0040.10.184549
MA0041.10.286501
MA0042.10.431236
MA0043.10.0283808
MA0046.10.0262004
MA0048.10.115614
MA0050.10.12965
MA0051.10.0356931
MA0052.10.0157591
MA0055.14.91754
MA0056.10
MA0057.10.500865
MA0058.10.00764348
MA0059.10.00741391
MA0060.11.01227
MA0061.10.0990787
MA0063.10
MA0066.10.0133942
MA0067.10.141036
MA0068.10.303213
MA0069.11.14913
MA0070.11.10491
MA0071.10.10507
MA0072.10.242588
MA0073.10.00564634
MA0074.10.0791867
MA0076.10.048049
MA0077.10.719265
MA0078.10.52131
MA0081.10.166228
MA0083.10.122916
MA0084.10.250798
MA0087.10.453383
MA0088.11.27905e-05
MA0089.10
MA0090.10.0321478
MA0091.12.51395
MA0092.10.158307
MA0093.10.0184035
MA0095.10
MA0098.10
MA0100.10.29444
MA0101.10.220153
MA0103.10.0757244
MA0105.10.00281665
MA0106.10.363729
MA0107.10.22821
MA0108.21.57021
MA0109.10
MA0111.10.292644
MA0113.10.00775359
MA0114.10.0708963
MA0115.10.104885
MA0116.10.0107499
MA0117.10.144788
MA0119.10.00498388
MA0122.10.670075
MA0124.10.295135
MA0125.10.210495
MA0130.10
MA0131.10.0512401
MA0132.10
MA0133.10
MA0135.10.929977
MA0136.10.1682
MA0139.10.000370528
MA0140.11.25886
MA0141.10.033883
MA0142.13.61003
MA0143.11.0853
MA0144.10.0176986
MA0145.10.110002
MA0146.11.65122e-12
MA0147.10.0614267
MA0148.10.598257
MA0149.10.161596
MA0062.28.82784e-06
MA0035.20.581732
MA0039.20.00158182
MA0138.20.343018
MA0002.20.0336681
MA0137.20.198064
MA0104.20.0183476
MA0047.20.113143
MA0112.20.000670387
MA0065.20.15664
MA0150.10.0968546
MA0151.10
MA0152.11.04764
MA0153.10.0526728
MA0154.10.0456202
MA0155.10.00112655
MA0156.10.794686
MA0157.11.59076
MA0158.10
MA0159.10.342605
MA0160.10.015487
MA0161.10
MA0162.10.0133656
MA0163.19.29456e-09
MA0164.10.881882
MA0080.20.0346526
MA0018.20.00627871
MA0099.20.0558283
MA0079.22.73977e-10
MA0102.20.275729
MA0258.10.00334227
MA0259.10.161276
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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