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{{Coexpression_clusters
{
|coexpression_dpi_cluster_scores_median=0,0,0

Latest revision as of 10:29, 17 September 2013


Full id: C91_Fibroblast_Smooth_mesenchymal_Mesothelial_Small_Preadipocyte_Hair



Phase1 CAGE Peaks

Hg19::chr10:14083240..14083244,-p@chr10:14083240..14083244
-
Hg19::chr10:54248451..54248453,-p@chr10:54248451..54248453
-
Hg19::chr11:10349108..10349113,+p@chr11:10349108..10349113
+
Hg19::chr11:12107935..12107951,-p@chr11:12107935..12107951
-
Hg19::chr11:12108136..12108151,+p4@ENST00000527997
Hg19::chr11:28779323..28779364,-p@chr11:28779323..28779364
-
Hg19::chr11:28779555..28779601,+p@chr11:28779555..28779601
+
Hg19::chr11:28858122..28858128,+p@chr11:28858122..28858128
+
Hg19::chr11:28858441..28858464,+p@chr11:28858441..28858464
+
Hg19::chr11:29207409..29207435,+p@chr11:29207409..29207435
+
Hg19::chr11:29328382..29328391,+p@chr11:29328382..29328391
+
Hg19::chr11:29331768..29331769,-p@chr11:29331768..29331769
-
Hg19::chr11:36796505..36796529,+p@chr11:36796505..36796529
+
Hg19::chr11:5385751..5385762,+p@chr11:5385751..5385762
+
Hg19::chr11:9588526..9588534,+p@chr11:9588526..9588534
+
Hg19::chr12:16505568..16505582,-p@chr12:16505568..16505582
-
Hg19::chr12:65959415..65959422,-p@chr12:65959415..65959422
-
Hg19::chr12:65959975..65959997,+p@chr12:65959975..65959997
+
Hg19::chr12:66009286..66009299,+p@chr12:66009286..66009299
+
Hg19::chr12:71054737..71054749,-p@chr12:71054737..71054749
-
Hg19::chr12:76056397..76056405,-p@chr12:76056397..76056405
-
Hg19::chr12:76108116..76108123,-p@chr12:76108116..76108123
-
Hg19::chr12:76108149..76108159,-p@chr12:76108149..76108159
-
Hg19::chr12:76175230..76175237,-p@chr12:76175230..76175237
-
Hg19::chr12:76175239..76175250,-p@chr12:76175239..76175250
-
Hg19::chr12:76219575..76219590,-p@chr12:76219575..76219590
-
Hg19::chr12:76270706..76270708,-p@chr12:76270706..76270708
-
Hg19::chr12:88782727..88782732,-p@chr12:88782727..88782732
-
Hg19::chr12:96199635..96199641,-p@chr12:96199635..96199641
-
Hg19::chr13:38275506..38275512,-p@chr13:38275506..38275512
-
Hg19::chr13:84979566..84979573,-p@chr13:84979566..84979573
-
Hg19::chr14:23158454..23158473,-p@chr14:23158454..23158473
-
Hg19::chr14:68614207..68614210,-p@chr14:68614207..68614210
-
Hg19::chr14:79436226..79436229,+p@chr14:79436226..79436229
+
Hg19::chr15:32975140..32975144,+p@chr15:32975140..32975144
+
Hg19::chr15:33066256..33066281,-p@chr15:33066256..33066281
-
Hg19::chr15:33144134..33144145,+p@chr15:33144134..33144145
+
Hg19::chr15:33212102..33212104,-p@chr15:33212102..33212104
-
Hg19::chr15:39087787..39087794,-p@chr15:39087787..39087794
-
Hg19::chr15:39087815..39087824,-p@chr15:39087815..39087824
-
Hg19::chr15:39288691..39288698,+p@chr15:39288691..39288698
+
Hg19::chr15:39420495..39420503,+p@chr15:39420495..39420503
+
Hg19::chr15:39420650..39420666,+p@chr15:39420650..39420666
+
Hg19::chr15:39765414..39765425,+p1@ENST00000560552
Hg19::chr15:39765435..39765438,+p2@ENST00000560552
Hg19::chr15:88212656..88212660,+p@chr15:88212656..88212660
+
Hg19::chr16:88337786..88337798,-p@chr16:88337786..88337798
-
Hg19::chr17:39109341..39109347,+p@chr17:39109341..39109347
+
Hg19::chr17:57841314..57841323,-p@chr17:57841314..57841323
-
Hg19::chr17:62679110..62679113,+p@chr17:62679110..62679113
+
Hg19::chr17:67057203..67057228,-p4@ABCA9
Hg19::chr18:20143107..20143124,-p@chr18:20143107..20143124
-
Hg19::chr18:55487026..55487030,-p@chr18:55487026..55487030
-
Hg19::chr19:43584268..43584275,+p@chr19:43584268..43584275
+
Hg19::chr1:115732772..115732797,-p@chr1:115732772..115732797
-
Hg19::chr1:115733003..115733008,+p@chr1:115733003..115733008
+
Hg19::chr1:115801241..115801245,+p@chr1:115801241..115801245
+
Hg19::chr1:115873480..115873484,+p@chr1:115873480..115873484
+
Hg19::chr1:160881636..160881640,+p@chr1:160881636..160881640
+
Hg19::chr1:172961144..172961147,+p@chr1:172961144..172961147
+
Hg19::chr1:183204105..183204116,+p@chr1:183204105..183204116
+
Hg19::chr1:199267284..199267291,+p@chr1:199267284..199267291
+
Hg19::chr1:215157211..215157225,+p@chr1:215157211..215157225
+
Hg19::chr1:215157270..215157279,+p@chr1:215157270..215157279
+
Hg19::chr1:219514172..219514177,-p@chr1:219514172..219514177
-
Hg19::chr1:226851965..226851967,+p@chr1:226851965..226851967
+
Hg19::chr1:238811500..238811513,+p@chr1:238811500..238811513
+
Hg19::chr1:246579848..246579858,-p@chr1:246579848..246579858
-
Hg19::chr1:86073371..86073381,+p@chr1:86073371..86073381
+
Hg19::chr1:86078791..86078795,+p@chr1:86078791..86078795
+
Hg19::chr20:7717290..7717300,+p@chr20:7717290..7717300
+
Hg19::chr20:7741649..7741652,+p@chr20:7741649..7741652
+
Hg19::chr20:7755823..7755848,-p@chr20:7755823..7755848
-
Hg19::chr21:28945118..28945164,-p@chr21:28945118..28945164
-
Hg19::chr21:28955184..28955188,+p@chr21:28955184..28955188
+
Hg19::chr21:30000326..30000330,+p@chr21:30000326..30000330
+
Hg19::chr2:151537893..151537898,-p@chr2:151537893..151537898
-
Hg19::chr2:159992786..159992791,+p20@TANC1
Hg19::chr2:162927693..162927706,-p@chr2:162927693..162927706
-
Hg19::chr2:162929164..162929167,+p@chr2:162929164..162929167
+
Hg19::chr2:162929288..162929298,+p5@ENST00000418335
Hg19::chr2:162943708..162943739,+p@chr2:162943708..162943739
+
Hg19::chr2:162949963..162949969,+p1@ENST00000432251
Hg19::chr2:18807662..18807665,-p@chr2:18807662..18807665
-
Hg19::chr2:196478728..196478750,-p@chr2:196478728..196478750
-
Hg19::chr2:216301308..216301324,+p@chr2:216301308..216301324
+
Hg19::chr2:216578345..216578377,+p@chr2:216578345..216578377
+
Hg19::chr2:216588131..216588134,+p@chr2:216588131..216588134
+
Hg19::chr2:216623643..216623668,+p@chr2:216623643..216623668
+
Hg19::chr2:216623697..216623706,+p@chr2:216623697..216623706
+
Hg19::chr2:216638374..216638390,-p@chr2:216638374..216638390
-
Hg19::chr2:228682897..228682916,-p@chr2:228682897..228682916
-
Hg19::chr2:37938667..37938670,-p@chr2:37938667..37938670
-
Hg19::chr2:38055275..38055310,-p@chr2:38055275..38055310
-
Hg19::chr2:54199052..54199059,-p@chr2:54199052..54199059
-
Hg19::chr2:55327810..55327812,-p@chr2:55327810..55327812
-
Hg19::chr2:56089534..56089541,-p@chr2:56089534..56089541
-
Hg19::chr2:56220069..56220077,+p@chr2:56220069..56220077
+
Hg19::chr2:67730504..67730512,+p@chr2:67730504..67730512
+
Hg19::chr2:72789317..72789322,+p@chr2:72789317..72789322
+
Hg19::chr3:101899338..101899342,+p@chr3:101899338..101899342
+
Hg19::chr3:106464246..106464276,-p@chr3:106464246..106464276
-
Hg19::chr3:111480481..111480482,+p@chr3:111480481..111480482
+
Hg19::chr3:111522000..111522033,-p@chr3:111522000..111522033
-
Hg19::chr3:111584345..111584377,+p@chr3:111584345..111584377
+
Hg19::chr3:112359324..112359338,+p@chr3:112359324..112359338
+
Hg19::chr3:134046037..134046050,+p@chr3:134046037..134046050
+
Hg19::chr3:141105560..141105572,-p@chr3:141105560..141105572
-
Hg19::chr3:141105574..141105581,-p@chr3:141105574..141105581
-
Hg19::chr3:141105589..141105621,-p@chr3:141105589..141105621
-
Hg19::chr3:156207749..156207761,+p@chr3:156207749..156207761
+
Hg19::chr3:156437182..156437193,+p@chr3:156437182..156437193
+
Hg19::chr3:156877038..156877058,-p35@CCNL1
Hg19::chr3:156878186..156878199,-p71@CCNL1
Hg19::chr3:156878415..156878435,-p9@CCNL1
Hg19::chr3:170430340..170430344,+p@chr3:170430340..170430344
+
Hg19::chr3:170459091..170459101,-p4@ENST00000473110
Hg19::chr3:170459106..170459125,-p1@ENST00000473110
Hg19::chr3:170463391..170463423,+p@chr3:170463391..170463423
+
Hg19::chr3:170464281..170464285,+p@chr3:170464281..170464285
+
Hg19::chr3:170469063..170469069,+p@chr3:170469063..170469069
+
Hg19::chr3:29800057..29800074,+p@chr3:29800057..29800074
+
Hg19::chr3:71222427..71222440,+p@chr3:71222427..71222440
+
Hg19::chr4:10182011..10182023,-p@chr4:10182011..10182023
-
Hg19::chr4:114355620..114355627,+p@chr4:114355620..114355627
+
Hg19::chr4:115193252..115193270,-p@chr4:115193252..115193270
-
Hg19::chr4:120133504..120133520,-p1@AK098126
Hg19::chr4:123686305..123686329,+p@chr4:123686305..123686329
+
Hg19::chr4:13890014..13890023,+p@chr4:13890014..13890023
+
Hg19::chr4:15692343..15692349,+p@chr4:15692343..15692349
+
Hg19::chr4:181844926..181844937,+p@chr4:181844926..181844937
+
Hg19::chr4:38143865..38143904,-p@chr4:38143865..38143904
-
Hg19::chr4:38147484..38147500,-p@chr4:38147484..38147500
-
Hg19::chr4:47533429..47533432,-p@chr4:47533429..47533432
-
Hg19::chr4:67281053..67281056,-p@chr4:67281053..67281056
-
Hg19::chr4:67292646..67292650,-p@chr4:67292646..67292650
-
Hg19::chr4:67298860..67298867,-p@chr4:67298860..67298867
-
Hg19::chr4:67300735..67300776,-p@chr4:67300735..67300776
-
Hg19::chr4:67430351..67430354,-p@chr4:67430351..67430354
-
Hg19::chr4:67441054..67441061,+p@chr4:67441054..67441061
+
Hg19::chr4:77703570..77703577,+p@chr4:77703570..77703577
+
Hg19::chr4:81159520..81159523,+p@chr4:81159520..81159523
+
Hg19::chr4:88930306..88930310,+p@chr4:88930306..88930310
+
Hg19::chr4:99934696..99934700,-p@chr4:99934696..99934700
-
Hg19::chr5:111342511..111342533,-p@chr5:111342511..111342533
-
Hg19::chr5:14109718..14109721,+p@chr5:14109718..14109721
+
Hg19::chr5:144875561..144875565,+p@chr5:144875561..144875565
+
Hg19::chr5:151066253..151066272,-p@chr5:151066253..151066272
-
Hg19::chr5:163602194..163602199,-p@chr5:163602194..163602199
-
Hg19::chr5:163787736..163787752,-p@chr5:163787736..163787752
-
Hg19::chr5:37772283..37772287,+p@chr5:37772283..37772287
+
Hg19::chr5:52660072..52660094,-p@chr5:52660072..52660094
-
Hg19::chr5:53358788..53358795,-p@chr5:53358788..53358795
-
Hg19::chr5:97750593..97750597,-p@chr5:97750593..97750597
-
Hg19::chr6:121837348..121837351,+p@chr6:121837348..121837351
+
Hg19::chr6:121843766..121843798,+p@chr6:121843766..121843798
+
Hg19::chr6:135231685..135231692,+p@chr6:135231685..135231692
+
Hg19::chr6:136397717..136397720,-p@chr6:136397717..136397720
-
Hg19::chr6:140070083..140070090,+p@chr6:140070083..140070090
+
Hg19::chr6:57128349..57128352,+p@chr6:57128349..57128352
+
Hg19::chr7:119692917..119692924,-p@chr7:119692917..119692924
-
Hg19::chr7:120724895..120724911,-p@chr7:120724895..120724911
-
Hg19::chr7:139295794..139295798,+p@chr7:139295794..139295798
+
Hg19::chr7:22629318..22629324,+p1@ENST00000439823
Hg19::chr7:22687639..22687644,+p@chr7:22687639..22687644
+
Hg19::chr7:32133423..32133424,+p@chr7:32133423..32133424
+
Hg19::chr7:34019832..34019836,+p@chr7:34019832..34019836
+
Hg19::chr7:41956273..41956284,-p@chr7:41956273..41956284
-
Hg19::chr7:47835322..47835327,-p@chr7:47835322..47835327
-
Hg19::chr7:84349905..84349926,-p@chr7:84349905..84349926
-
Hg19::chr7:84349931..84349955,-p@chr7:84349931..84349955
-
Hg19::chr7:84807360..84807364,+p@chr7:84807360..84807364
+
Hg19::chr7:93928562..93928567,+p@chr7:93928562..93928567
+
Hg19::chr8:107870700..107870705,-p@chr8:107870700..107870705
-
Hg19::chr8:11373722..11373763,+p@chr8:11373722..11373763
+
Hg19::chr8:119452230..119452235,+p@chr8:119452230..119452235
+
Hg19::chr8:123139671..123139687,+p@chr8:123139671..123139687
+
Hg19::chr8:123141284..123141287,-p@chr8:123141284..123141287
-
Hg19::chr8:123376383..123376386,+p@chr8:123376383..123376386
+
Hg19::chr8:123446690..123446696,+p@chr8:123446690..123446696
+
Hg19::chr8:125193673..125193689,-p@chr8:125193673..125193689
-
Hg19::chr8:129188825..129188841,-p@chr8:129188825..129188841
-
Hg19::chr8:129522281..129522284,-p@chr8:129522281..129522284
-
Hg19::chr8:129527052..129527059,-p@chr8:129527052..129527059
-
Hg19::chr8:13230011..13230026,-p@chr8:13230011..13230026
-
Hg19::chr8:23210765..23210805,+p@chr8:23210765..23210805
+
Hg19::chr8:23213977..23213984,+p@chr8:23213977..23213984
+
Hg19::chr8:37003588..37003608,-p@chr8:37003588..37003608
-
Hg19::chr8:69832864..69832865,+p@chr8:69832864..69832865
+
Hg19::chr8:69834272..69834299,-p@chr8:69834272..69834299
-
Hg19::chr8:69837388..69837402,-p@chr8:69837388..69837402
-
Hg19::chr9:107039238..107039243,-p@chr9:107039238..107039243
-
Hg19::chr9:114720627..114720666,+p@chr9:114720627..114720666
+
Hg19::chr9:114811656..114811667,+p@chr9:114811656..114811667
+
Hg19::chr9:114811717..114811737,+p@chr9:114811717..114811737
+
Hg19::chr9:114835859..114835862,+p@chr9:114835859..114835862
+
Hg19::chr9:118356219..118356259,+p@chr9:118356219..118356259
+
Hg19::chr9:118413157..118413164,-p@chr9:118413157..118413164
-
Hg19::chr9:118413835..118413843,-p@chr9:118413835..118413843
-
Hg19::chr9:13706264..13706267,+p@chr9:13706264..13706267
+
Hg19::chr9:13707925..13707941,+p@chr9:13707925..13707941
+
Hg19::chr9:83647430..83647434,+p@chr9:83647430..83647434
+
Hg19::chrX:3445372..3445378,-p@chrX:3445372..3445378
-
Hg19::chrX:45376982..45376988,+p@chrX:45376982..45376988
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
artery wall4.00e-504
tunica adventitia of artery4.00e-504
adventitia4.00e-504
tunica adventitia of blood vessel4.00e-504
aorta tunica adventitia4.00e-504
aorta wall4.00e-504
blood vessel layer3.16e-297
brachiocephalic artery9.18e-262
brachiocephalic vasculature9.18e-262
systemic artery9.87e-2533
systemic arterial system9.87e-2533
aorta4.43e-2221
aortic system4.43e-2221
artery1.19e-1942
arterial blood vessel1.19e-1942
arterial system1.19e-1942
anatomical wall1.44e-1712
epithelial tube open at both ends2.92e-1459
blood vessel2.92e-1459
blood vasculature2.92e-1459
vascular cord2.92e-1459
vessel1.71e-1268
vasculature5.31e-1178
vascular system5.31e-1178
splanchnic layer of lateral plate mesoderm2.17e-1083
cardiovascular system4.22e-08109
circulatory system6.64e-08112
epithelial tube1.34e-07117


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10
MA0004.10.181395
MA0006.19.61017e-06
MA0007.15.04841e-05
MA0009.10.63234
MA0014.10
MA0017.10.0404753
MA0019.10.223241
MA0024.10.00621958
MA0025.10.669498
MA0027.11.14111
MA0028.13.34135e-06
MA0029.13.51021
MA0030.10.393241
MA0031.10.14152
MA0038.11.6502
MA0040.10.432001
MA0041.11.42414
MA0042.10.933118
MA0043.10.383072
MA0046.10.90243
MA0048.11.1391e-07
MA0050.10.330511
MA0051.10.481446
MA0052.10.440905
MA0055.11.71168e-13
MA0056.10
MA0057.11.36159e-06
MA0058.10.107068
MA0059.10.309246
MA0060.10.038129
MA0061.10.00244674
MA0063.10
MA0066.10.0156627
MA0067.10.107027
MA0068.11.56901e-05
MA0069.10.888638
MA0070.10.335351
MA0071.10.358157
MA0072.11.16843
MA0073.10
MA0074.10.0748959
MA0076.10.000233045
MA0077.11.13448
MA0078.11.83149
MA0081.10.665723
MA0083.13.86823
MA0084.10.591974
MA0087.10.824899
MA0088.12.63359e-11
MA0089.10
MA0090.13.90312
MA0091.10.387177
MA0092.10.254823
MA0093.10.233058
MA0095.10
MA0098.10
MA0100.10.00616252
MA0101.10.1261
MA0103.10.000116242
MA0105.12.53653e-09
MA0106.10.00222508
MA0107.10.152998
MA0108.21.52365
MA0109.10
MA0111.10.0132169
MA0113.10.0122028
MA0114.10.02828
MA0115.10.263828
MA0116.17.37643e-06
MA0117.10.0974943
MA0119.10.176831
MA0122.10.274565
MA0124.10.836002
MA0125.10.150885
MA0130.10
MA0131.10.000948174
MA0132.10
MA0133.10
MA0135.10.232203
MA0136.10.707977
MA0139.15.4008e-07
MA0140.11.55879
MA0141.10.0635916
MA0142.12.90201
MA0143.11.85157
MA0144.10.797643
MA0145.12.7482e-09
MA0146.10
MA0147.10.00410523
MA0148.10.633811
MA0149.13.20458e-05
MA0062.25.7722e-08
MA0035.26.75842
MA0039.20
MA0138.20.000718581
MA0002.20.190898
MA0137.20.647507
MA0104.20.000590714
MA0047.20.445297
MA0112.22.76055e-09
MA0065.27.32227e-05
MA0150.12.20928
MA0151.10
MA0152.11.34962
MA0153.10.588038
MA0154.11.36948e-06
MA0155.12.55209e-13
MA0156.10.121227
MA0157.10.458806
MA0158.10
MA0159.10.000334511
MA0160.10.403945
MA0161.10
MA0162.10
MA0163.10
MA0164.13.11207
MA0080.20.169589
MA0018.20.0287537
MA0099.24.99286
MA0079.20
MA0102.20.646154
MA0258.10.0036945
MA0259.10.000479994
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
CEBPB#1051652.539826449404974.68082420165369e-136.84678709799033e-11
EP300#2033802.65644773577381.35062987529171e-172.87874354174676e-15
ESR1#2099152.262397301187830.002966980173026560.0158144555624539
FOS#2353682.999318436298142.64408983603706e-175.4899820752659e-15
GATA2#2624754.685636666747793.6698247966208e-311.5392483210212e-28
GATA3#2625192.536734366602520.000212620714811310.00245152294481988
JUN#3725774.722979646126952.50618264375689e-321.10908139462426e-29
JUND#3727672.297267078947841.75325451469847e-112.12669161742849e-09
NR3C1#2908322.348709542144796.18715449940844e-060.000182846697443044
PRDM1#63963.877381052278260.004929941781788110.0230391171356796
SIRT6#5154853.765647156618260.01124293297375360.041275333128721
STAT3#6774603.093960293280669.81881038044625e-161.85102299155853e-13



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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