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{{Coexpression_clusters
{{Coexpression_clusters|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.925202396917051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|full_id=C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma|gostat_on_coexpression_clusters=GO:0007399!nervous system development!0.000171765853094219!1742;4760;8929;64377;3196;4808;4440$GO:0048731!system development!0.0017186126688088!1742;4760;8929;2139;64377;3196;4808;4440$GO:0007275!multicellular organismal development!0.00189814892299092!4760;1653;8929;2139;64377;3196;1742;4440;4808$GO:0032502!developmental process!0.00343797603353163!4760;1653;8929;2139;64377;3196;1742;51454;4440;4808$GO:0048856!anatomical structure development!0.00343797603353163!1742;4760;8929;2139;64377;3196;4808;4440$GO:0032501!multicellular organismal process!0.00780958209236935!6752;4760;1653;8929;2139;64377;3196;1742;4440;4808$GO:0010468!regulation of gene expression!0.00780958209236935!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0031323!regulation of cellular metabolic process!0.00848662852663684!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0019222!regulation of metabolic process!0.0118067418075942!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0005737!cytoplasm!0.0143010395208181!4093;23426;4760;2139;64377;3196;94005;54905;1742;51454;160287;4440;118429$GO:0045449!regulation of transcription!0.0164689418232576!4093;23426;4760;8929;2139;84969;3196;222894;4808$GO:0007417!central nervous system development!0.0164689418232576!4760;64377;4808$GO:0019219!regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.0164689418232576!4093;23426;4760;8929;2139;84969;3196;222894;4808$GO:0007501!mesodermal cell fate specification!0.0164689418232576!2139$GO:0043231!intracellular membrane-bound organelle!0.0164689418232576!4093;23426;4760;8929;2139;64377;84969;3196;94005;222894;54905;118429;4440;4808$GO:0043227!membrane-bound organelle!0.0164689418232576!4093;23426;4760;8929;2139;64377;84969;3196;94005;222894;54905;118429;4440;4808$GO:0006350!transcription!0.0164689418232576!4093;23426;4760;8929;2139;84969;3196;222894;4808$GO:0050794!regulation of cellular process!0.018115554288896!6752;4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0045165!cell fate commitment!0.0222460872433!4760;2139$GO:0048869!cellular developmental process!0.0222460872433!4760;51454;8929;2139;3196;4808$GO:0030154!cell differentiation!0.0222460872433!4760;51454;8929;2139;3196;4808$GO:0016070!RNA metabolic process!0.0222460872433!4093;23426;4760;1653;8929;2139;84969;3196;4808$GO:0016167!glial cell line-derived neurotrophic factor receptor activity!0.0222460872433!2675$GO:0050774!negative regulation of dendrite morphogenesis!0.0222460872433!3196$GO:0006355!regulation of transcription, DNA-dependent!0.0235101997012121!4093;23426;4760;8929;2139;84969;3196;4808$GO:0050789!regulation of biological process!0.0236139168726967!6752;4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0006351!transcription, DNA-dependent!0.0247288604075228!4093;23426;4760;8929;2139;84969;3196;4808$GO:0032774!RNA biosynthetic process!0.0247288604075228!4093;23426;4760;8929;2139;84969;3196;4808$GO:0044424!intracellular part!0.0262669635116243!8929;2139;84969;3196;94005;4808;118429;4093;23426;4760;64377;222894;1742;54905;160287;51454;4440$GO:0048814!regulation of dendrite morphogenesis!0.0266862685324948!3196$GO:0043229!intracellular organelle!0.0286528967531669!4093;23426;4760;8929;2139;64377;84969;3196;94005;222894;54905;1742;4808;118429;4440$GO:0043226!organelle!0.0286528967531669!4093;23426;4760;8929;2139;64377;84969;3196;94005;222894;54905;1742;4808;118429;4440$GO:0010467!gene expression!0.0286528967531669!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0008266!poly(U) binding!0.0296413736381096!4440$GO:0050773!regulation of dendrite development!0.0296413736381096!3196$GO:0048813!dendrite morphogenesis!0.0296413736381096!3196$GO:0005783!endoplasmic reticulum!0.0310095440878635!23426;54905;94005;118429$GO:0065007!biological regulation!0.0310095440878635!6752;4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0001537!N-acetylgalactosamine 4-O-sulfotransferase activity!0.0310095440878635!64377$GO:0006911!phagocytosis, engulfment!0.0310095440878635!51454$GO:0004994!somatostatin receptor activity!0.0310095440878635!6752$GO:0003923!GPI-anchor transamidase activity!0.0310095440878635!94005$GO:0016255!attachment of GPI anchor to protein!0.0310095440878635!94005$GO:0007617!mating behavior!0.0348760096553614!4808$GO:0019098!reproductive behavior!0.0348760096553614!4808$GO:0006139!nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.0348760096553614!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0005515!protein binding!0.0363028831603493!6752;4093;23426;4760;3208;1653;124857;8929;3196;94005;1742;51454;118429$GO:0001710!mesodermal cell fate commitment!0.0374235450638049!2139$GO:0048333!mesodermal cell differentiation!0.0374235450638049!2139$GO:0045211!postsynaptic membrane!0.0374235450638049!23426;1742$GO:0042765!GPI-anchor transamidase complex!0.0417900332832!94005$GO:0044456!synapse part!0.0418186566332716!23426;1742$GO:0004459!L-lactate dehydrogenase activity!0.0435798547184848!160287$GO:0019642!anaerobic glycolysis!0.0435798547184848!160287$GO:0005844!polysome!0.0435798547184848!4440$GO:0004457!lactate dehydrogenase 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|full_id=C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma
|gostat_on_coexpression_clusters=GO:0007399!nervous system development!0.000171765853094219!1742;4760;8929;64377;3196;4808;4440$GO:0048731!system development!0.0017186126688088!1742;4760;8929;2139;64377;3196;4808;4440$GO:0007275!multicellular organismal development!0.00189814892299092!4760;1653;8929;2139;64377;3196;1742;4440;4808$GO:0032502!developmental process!0.00343797603353163!4760;1653;8929;2139;64377;3196;1742;51454;4440;4808$GO:0048856!anatomical structure development!0.00343797603353163!1742;4760;8929;2139;64377;3196;4808;4440$GO:0032501!multicellular organismal process!0.00780958209236935!6752;4760;1653;8929;2139;64377;3196;1742;4440;4808$GO:0010468!regulation of gene expression!0.00780958209236935!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0031323!regulation of cellular metabolic process!0.00848662852663684!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0019222!regulation of metabolic process!0.0118067418075942!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0005737!cytoplasm!0.0143010395208181!4093;23426;4760;2139;64377;3196;94005;54905;1742;51454;160287;4440;118429$GO:0045449!regulation of transcription!0.0164689418232576!4093;23426;4760;8929;2139;84969;3196;222894;4808$GO:0007417!central nervous system development!0.0164689418232576!4760;64377;4808$GO:0019219!regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.0164689418232576!4093;23426;4760;8929;2139;84969;3196;222894;4808$GO:0007501!mesodermal cell fate specification!0.0164689418232576!2139$GO:0043231!intracellular membrane-bound organelle!0.0164689418232576!4093;23426;4760;8929;2139;64377;84969;3196;94005;222894;54905;118429;4440;4808$GO:0043227!membrane-bound organelle!0.0164689418232576!4093;23426;4760;8929;2139;64377;84969;3196;94005;222894;54905;118429;4440;4808$GO:0006350!transcription!0.0164689418232576!4093;23426;4760;8929;2139;84969;3196;222894;4808$GO:0050794!regulation of cellular process!0.018115554288896!6752;4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0045165!cell fate commitment!0.0222460872433!4760;2139$GO:0048869!cellular developmental process!0.0222460872433!4760;51454;8929;2139;3196;4808$GO:0030154!cell differentiation!0.0222460872433!4760;51454;8929;2139;3196;4808$GO:0016070!RNA metabolic process!0.0222460872433!4093;23426;4760;1653;8929;2139;84969;3196;4808$GO:0016167!glial cell line-derived neurotrophic factor receptor activity!0.0222460872433!2675$GO:0050774!negative regulation of dendrite morphogenesis!0.0222460872433!3196$GO:0006355!regulation of transcription, DNA-dependent!0.0235101997012121!4093;23426;4760;8929;2139;84969;3196;4808$GO:0050789!regulation of biological process!0.0236139168726967!6752;4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0006351!transcription, DNA-dependent!0.0247288604075228!4093;23426;4760;8929;2139;84969;3196;4808$GO:0032774!RNA biosynthetic process!0.0247288604075228!4093;23426;4760;8929;2139;84969;3196;4808$GO:0044424!intracellular part!0.0262669635116243!8929;2139;84969;3196;94005;4808;118429;4093;23426;4760;64377;222894;1742;54905;160287;51454;4440$GO:0048814!regulation of dendrite morphogenesis!0.0266862685324948!3196$GO:0043229!intracellular organelle!0.0286528967531669!4093;23426;4760;8929;2139;64377;84969;3196;94005;222894;54905;1742;4808;118429;4440$GO:0043226!organelle!0.0286528967531669!4093;23426;4760;8929;2139;64377;84969;3196;94005;222894;54905;1742;4808;118429;4440$GO:0010467!gene expression!0.0286528967531669!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0008266!poly(U) binding!0.0296413736381096!4440$GO:0050773!regulation of dendrite development!0.0296413736381096!3196$GO:0048813!dendrite morphogenesis!0.0296413736381096!3196$GO:0005783!endoplasmic reticulum!0.0310095440878635!23426;54905;94005;118429$GO:0065007!biological regulation!0.0310095440878635!6752;4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0001537!N-acetylgalactosamine 4-O-sulfotransferase activity!0.0310095440878635!64377$GO:0006911!phagocytosis, engulfment!0.0310095440878635!51454$GO:0004994!somatostatin receptor activity!0.0310095440878635!6752$GO:0003923!GPI-anchor transamidase activity!0.0310095440878635!94005$GO:0016255!attachment of GPI anchor to protein!0.0310095440878635!94005$GO:0007617!mating behavior!0.0348760096553614!4808$GO:0019098!reproductive behavior!0.0348760096553614!4808$GO:0006139!nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.0348760096553614!4093;23426;4760;1653;8929;2139;84969;3196;222894;4808$GO:0005515!protein binding!0.0363028831603493!6752;4093;23426;4760;3208;1653;124857;8929;3196;94005;1742;51454;118429$GO:0001710!mesodermal cell fate commitment!0.0374235450638049!2139$GO:0048333!mesodermal cell differentiation!0.0374235450638049!2139$GO:0045211!postsynaptic membrane!0.0374235450638049!23426;1742$GO:0042765!GPI-anchor transamidase complex!0.0417900332832!94005$GO:0044456!synapse part!0.0418186566332716!23426;1742$GO:0004459!L-lactate dehydrogenase activity!0.0435798547184848!160287$GO:0019642!anaerobic glycolysis!0.0435798547184848!160287$GO:0005844!polysome!0.0435798547184848!4440$GO:0004457!lactate dehydrogenase activity!0.0475412938402424!160287
|id=C85
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000073!1.67e-29!94;UBERON:0001016!1.67e-29!94;UBERON:0001017!4.03e-29!82;UBERON:0005743!2.49e-28!86;UBERON:0001049!1.39e-23!57;UBERON:0005068!1.39e-23!57;UBERON:0006241!1.39e-23!57;UBERON:0007135!1.39e-23!57;UBERON:0000955!9.67e-23!69;UBERON:0006238!9.67e-23!69;UBERON:0007023!4.38e-22!115;UBERON:0002616!1.89e-20!59;UBERON:0002780!4.67e-20!41;UBERON:0001890!4.67e-20!41;UBERON:0006240!4.67e-20!41;UBERON:0003080!9.53e-20!42;UBERON:0002020!3.15e-17!34;UBERON:0003528!3.15e-17!34;UBERON:0001893!5.71e-17!34;UBERON:0002346!9.23e-17!90;UBERON:0002791!2.12e-16!33;UBERON:0001869!2.20e-16!32;UBERON:0003075!1.31e-15!86;UBERON:0007284!1.31e-15!86;UBERON:0002619!1.40e-13!22;UBERON:0000956!3.20e-13!25;UBERON:0000203!3.20e-13!25;UBERON:0001950!1.88e-12!20;UBERON:0003056!3.47e-12!61;UBERON:0000924!1.67e-11!173;UBERON:0006601!1.67e-11!173;UBERON:0004121!1.31e-10!169;UBERON:0000153!1.42e-09!129;UBERON:0007811!1.42e-09!129;UBERON:0000033!2.00e-08!123
}}

Latest revision as of 10:27, 17 September 2013


Full id: C85_neuroblastoma_carcinoid_retinoblastoma_small_pineal_rhabdomyosarcoma_medulloblastoma



Phase1 CAGE Peaks

Hg19::chr10:117803540..117803547,+p@chr10:117803540..117803547
+
Hg19::chr11:123567559..123567573,+p@chr11:123567559..123567573
+
Hg19::chr11:18477369..18477415,+p1@LDHAL6A
Hg19::chr11:39796850..39796855,+p@chr11:39796850..39796855
+
Hg19::chr11:8680006..8680010,-p@chr11:8680006..8680010
-
Hg19::chr11:8680046..8680060,-p@chr11:8680046..8680060
-
Hg19::chr11:8680082..8680102,-p@chr11:8680082..8680102
-
Hg19::chr12:120805876..120805897,-p6@MSI1
Hg19::chr12:133306843..133306848,-p27@ANKLE2
Hg19::chr12:14570875..14570907,+p@chr12:14570875..14570907
+
Hg19::chr12:14570928..14570945,+p@chr12:14570928..14570945
+
Hg19::chr12:66786385..66786419,-p13@GRIP1
Hg19::chr12:7527226..7527237,-p@chr12:7527226..7527237
-
Hg19::chr12:86777849..86777855,+p@chr12:86777849..86777855
+
Hg19::chr13:35778543..35778559,-p@chr13:35778543..35778559
-
Hg19::chr13:35778741..35778756,+p@chr13:35778741..35778756
+
Hg19::chr13:35782869..35782904,+p@chr13:35782869..35782904
+
Hg19::chr13:35804956..35804976,-p@chr13:35804956..35804976
-
Hg19::chr13:36045103..36045110,+p@chr13:36045103..36045110
+
Hg19::chr13:37494904..37494911,-p24@SMAD9
Hg19::chr13:37494987..37494992,-p23@SMAD9
Hg19::chr13:43873058..43873095,-p@chr13:43873058..43873095
-
Hg19::chr14:23466494..23466503,-p@chr14:23466494..23466503
-
Hg19::chr14:51057166..51057175,+p@chr14:51057166..51057175
+
Hg19::chr14:77387137..77387151,+p@chr14:77387137..77387151
+
Hg19::chr14:79880545..79880553,-p@chr14:79880545..79880553
-
Hg19::chr15:78914288..78914292,-p@chr15:78914288..78914292
-
Hg19::chr16:29825306..29825330,+p@chr16:29825306..29825330
+
Hg19::chr16:49733031..49733072,-p@chr16:49733031..49733072
-
Hg19::chr17:11389592..11389599,-p@chr17:11389592..11389599
-
Hg19::chr17:26891009..26891011,-p14@PIGS
Hg19::chr17:28903475..28903494,+p1@LRRC37BP1
Hg19::chr17:48911942..48911984,+p10@WFIKKN2
Hg19::chr17:50375199..50375224,+p@chr17:50375199..50375224
+
Hg19::chr17:66694330..66694333,-p@chr17:66694330..66694333
-
Hg19::chr17:7095595..7095641,-p5@DLG4
Hg19::chr17:7095642..7095662,-p17@DLG4
Hg19::chr17:7095665..7095701,-p4@DLG4
Hg19::chr17:7095704..7095716,-p25@DLG4
Hg19::chr17:71161140..71161174,+p1@SSTR2
Hg19::chr17:72104508..72104526,-p@chr17:72104508..72104526
-
Hg19::chr17:76713100..76713122,-p11@CYTH1
Hg19::chr17:77681118..77681143,+p1@HP09025
Hg19::chr18:18943559..18943587,+p@chr18:18943559..18943587
+
Hg19::chr18:22253333..22253348,+p@chr18:22253333..22253348
+
Hg19::chr18:435383..435391,-p@chr18:435383..435391
-
Hg19::chr19:34175642..34175654,+p3@CHST8
Hg19::chr19:41197501..41197540,+p1@CU680509
Hg19::chr19:4683283..4683314,-p@chr19:4683283..4683314
-
Hg19::chr1:11514263..11514273,-p@chr1:11514263..11514273
-
Hg19::chr1:116383701..116383706,-p9@NHLH2
Hg19::chr1:116383716..116383723,-p5@NHLH2
Hg19::chr1:116383738..116383752,-p1@NHLH2
Hg19::chr1:116908311..116908336,+p@chr1:116908311..116908336
+
Hg19::chr1:116908533..116908577,+p@chr1:116908533..116908577
+
Hg19::chr1:188791330..188791337,-p@chr1:188791330..188791337
-
Hg19::chr1:210789950..210789954,+p@chr1:210789950..210789954
+
Hg19::chr1:224847944..224847978,-p@chr1:224847944..224847978
-
Hg19::chr1:243557736..243557747,+p@chr1:243557736..243557747
+
Hg19::chr1:244419820..244419822,-p@chr1:244419820..244419822
-
Hg19::chr1:33351572..33351602,+p4@HPCA
Hg19::chr20:42667673..42667680,+p15@TOX2
Hg19::chr20:42863502..42863507,+p@chr20:42863502..42863507
+
Hg19::chr20:45523140..45523148,+p8@EYA2
Hg19::chr20:49838362..49838368,+p@chr20:49838362..49838368
+
Hg19::chr20:51453401..51453404,-p@chr20:51453401..51453404
-
Hg19::chr20:51511829..51511853,-p@chr20:51511829..51511853
-
Hg19::chr20:51511930..51511970,-p@chr20:51511930..51511970
-
Hg19::chr21:39288033..39288044,+p@chr21:39288033..39288044
+
Hg19::chr2:137523086..137523120,+p1@THSD7B
Hg19::chr2:137523123..137523134,+p3@THSD7B
Hg19::chr2:137523143..137523154,+p2@THSD7B
Hg19::chr2:137653110..137653113,+p@chr2:137653110..137653113
+
Hg19::chr2:15040249..15040252,+p@chr2:15040249..15040252
+
Hg19::chr2:15047375..15047384,+p@chr2:15047375..15047384
+
Hg19::chr2:15047385..15047399,+p@chr2:15047385..15047399
+
Hg19::chr2:15047410..15047415,+p@chr2:15047410..15047415
+
Hg19::chr2:15049487..15049491,-p@chr2:15049487..15049491
-
Hg19::chr2:15049978..15049987,-p@chr2:15049978..15049987
-
Hg19::chr2:15050016..15050024,-p@chr2:15050016..15050024
-
Hg19::chr2:15052822..15052826,-p@chr2:15052822..15052826
-
Hg19::chr2:15130380..15130381,-p@chr2:15130380..15130381
-
Hg19::chr2:15200068..15200072,-p@chr2:15200068..15200072
-
Hg19::chr2:156162072..156162084,+p@chr2:156162072..156162084
+
Hg19::chr2:156162148..156162154,+p@chr2:156162148..156162154
+
Hg19::chr2:156287980..156287983,+p@chr2:156287980..156287983
+
Hg19::chr2:15691754..15691803,-p@chr2:15691754..15691803
-
Hg19::chr2:15694908..15694923,-p@chr2:15694908..15694923
-
Hg19::chr2:15694924..15694928,-p@chr2:15694924..15694928
-
Hg19::chr2:15694929..15694950,-p@chr2:15694929..15694950
-
Hg19::chr2:15694960..15694970,-p@chr2:15694960..15694970
-
Hg19::chr2:15703776..15703783,+p@chr2:15703776..15703783
+
Hg19::chr2:15731289..15731298,+p6@DDX1
Hg19::chr2:15731692..15731705,-p@chr2:15731692..15731705
-
Hg19::chr2:15731732..15731744,-p@chr2:15731732..15731744
-
Hg19::chr2:15731782..15731899,-p@chr2:15731782..15731899
-
Hg19::chr2:15731901..15731913,-p@chr2:15731901..15731913
-
Hg19::chr2:15731978..15732050,+p1@DDX1
Hg19::chr2:15732427..15732439,-p@chr2:15732427..15732439
-
Hg19::chr2:15732443..15732474,-p@chr2:15732443..15732474
-
Hg19::chr2:15740801..15740812,+p@chr2:15740801..15740812
+
Hg19::chr2:15748757..15748764,+p@chr2:15748757..15748764
+
Hg19::chr2:15748808..15748813,+p@chr2:15748808..15748813
+
Hg19::chr2:15750164..15750182,+p@chr2:15750164..15750182
+
Hg19::chr2:15750783..15750790,+p@chr2:15750783..15750790
+
Hg19::chr2:15750933..15750939,+p@chr2:15750933..15750939
+
Hg19::chr2:15750941..15750967,+p@chr2:15750941..15750967
+
Hg19::chr2:15771117..15771141,+p@chr2:15771117..15771141
+
Hg19::chr2:15775085..15775089,+p@chr2:15775085..15775089
+
Hg19::chr2:15784374..15784378,+p@chr2:15784374..15784378
+
Hg19::chr2:16082812..16082820,+p@chr2:16082812..16082820
+
Hg19::chr2:177021851..177021861,+p@chr2:177021851..177021861
+
Hg19::chr2:182543783..182543813,-p6@NEUROD1
Hg19::chr2:189159028..189159031,+p36@GULP1
Hg19::chr2:74741642..74741658,+p2@TLX2
Hg19::chr2:74968903..74968927,-p@chr2:74968903..74968927
-
Hg19::chr2:84790187..84790195,+p@chr2:84790187..84790195
+
Hg19::chr3:13084508..13084517,-p@chr3:13084508..13084517
-
Hg19::chr3:29684296..29684311,-p1@RBMS3-AS2
Hg19::chr4:119234424..119234465,-p7@PRSS12
Hg19::chr4:121579996..121580040,+p@chr4:121579996..121580040
+
Hg19::chr4:174440289..174440300,-p@chr4:174440289..174440300
-
Hg19::chr4:174440376..174440389,-p@chr4:174440376..174440389
-
Hg19::chr4:174446653..174446657,-p@chr4:174446653..174446657
-
Hg19::chr4:174446687..174446692,-p@chr4:174446687..174446692
-
Hg19::chr4:174954376..174954399,-p@chr4:174954376..174954399
-
Hg19::chr4:174955165..174955170,-p@chr4:174955165..174955170
-
Hg19::chr4:174968748..174968753,+p@chr4:174968748..174968753
+
Hg19::chr4:175041125..175041137,-p@chr4:175041125..175041137
-
Hg19::chr4:175041762..175041777,-p2@ENST00000503140
Hg19::chr4:175041780..175041792,-p3@ENST00000503140
Hg19::chr4:175131715..175131722,+p@chr4:175131715..175131722
+
Hg19::chr4:175131785..175131801,+p@chr4:175131785..175131801
+
Hg19::chr4:175195325..175195356,-p@chr4:175195325..175195356
-
Hg19::chr4:175204466..175204499,+p5@CEP44
Hg19::chr4:175204510..175204534,+p4@CEP44
Hg19::chr4:175204540..175204549,+p11@CEP44
Hg19::chr4:175204865..175204915,+p2@CEP44
Hg19::chr4:175257438..175257442,+p@chr4:175257438..175257442
+
Hg19::chr4:175259387..175259388,+p1@AK125844
Hg19::chr4:175259702..175259704,+p2@AK125844
Hg19::chr4:3747792..3747806,+p@chr4:3747792..3747806
+
Hg19::chr4:41750047..41750056,-p7@PHOX2B
Hg19::chr4:41750057..41750078,-p3@PHOX2B
Hg19::chr4:41750310..41750322,+p2@ENST00000508038
Hg19::chr4:41750356..41750371,+p1@ENST00000508038
Hg19::chr4:41813448..41813455,-p@chr4:41813448..41813455
-
Hg19::chr4:41875745..41875750,-p@chr4:41875745..41875750
-
Hg19::chr4:80976472..80976514,-p33@ANTXR2
Hg19::chr4:80976547..80976566,-p30@ANTXR2
Hg19::chr4:85046693..85046696,-p@chr4:85046693..85046696
-
Hg19::chr4:85047369..85047375,-p@chr4:85047369..85047375
-
Hg19::chr5:112136808..112136818,+p@chr5:112136808..112136818
+
Hg19::chr5:120720126..120720131,-p@chr5:120720126..120720131
-
Hg19::chr5:134808885..134808888,-p@chr5:134808885..134808888
-
Hg19::chr5:178228030..178228032,-p@chr5:178228030..178228032
-
Hg19::chr5:178259802..178259818,-p@chr5:178259802..178259818
-
Hg19::chr5:178259821..178259898,-p@chr5:178259821..178259898
-
Hg19::chr5:38211560..38211569,-p@chr5:38211560..38211569
-
Hg19::chr5:68176275..68176277,-p@chr5:68176275..68176277
-
Hg19::chr6:117086007..117086014,-p@chr6:117086007..117086014
-
Hg19::chr6:123225630..123225667,+p@chr6:123225630..123225667
+
Hg19::chr6:16905685..16905689,+p@chr6:16905685..16905689
+
Hg19::chr6:16905879..16905882,+p@chr6:16905879..16905882
+
Hg19::chr6:23177224..23177279,-p1@ENST00000420572
Hg19::chr6:23177297..23177304,-p2@ENST00000420572
Hg19::chr6:23523310..23523315,+p@chr6:23523310..23523315
+
Hg19::chr6:3195997..3196015,-p1@LOC100507194
Hg19::chr6:33811774..33811788,+p@chr6:33811774..33811788
+
Hg19::chr6:65970038..65970044,-p@chr6:65970038..65970044
-
Hg19::chr6:79577709..79577716,+p@chr6:79577709..79577716
+
Hg19::chr6:79577721..79577739,+p@chr6:79577721..79577739
+
Hg19::chr6:79577742..79577749,+p@chr6:79577742..79577749
+
Hg19::chr7:1022943..1022954,+p3@CYP2W1
Hg19::chr7:1022973..1022988,+p2@CYP2W1
Hg19::chr7:131641304..131641315,+p@chr7:131641304..131641315
+
Hg19::chr7:18834859..18834879,-p@chr7:18834859..18834879
-
Hg19::chr7:18860636..18860637,-p@chr7:18860636..18860637
-
Hg19::chr7:18860660..18860668,-p@chr7:18860660..18860668
-
Hg19::chr7:18860675..18860696,-p@chr7:18860675..18860696
-
Hg19::chr7:18860722..18860728,-p@chr7:18860722..18860728
-
Hg19::chr7:18860743..18860764,-p@chr7:18860743..18860764
-
Hg19::chr7:18861111..18861118,-p@chr7:18861111..18861118
-
Hg19::chr7:18861136..18861151,-p@chr7:18861136..18861151
-
Hg19::chr7:19146256..19146270,-p@chr7:19146256..19146270
-
Hg19::chr7:19146281..19146282,-p@chr7:19146281..19146282
-
Hg19::chr7:19146371..19146419,-p@chr7:19146371..19146419
-
Hg19::chr7:19184929..19184938,-p4@FERD3L
Hg19::chr7:19185044..19185056,+p@chr7:19185044..19185056
+
Hg19::chr7:19185475..19185487,-p1@FERD3L
Hg19::chr7:19185559..19185569,-p@chr7:19185559..19185569
-
Hg19::chr7:19185585..19185590,-p@chr7:19185585..19185590
-
Hg19::chr7:19185639..19185643,+p@chr7:19185639..19185643
+
Hg19::chr7:19186529..19186536,+p@chr7:19186529..19186536
+
Hg19::chr7:31330919..31330935,+p@chr7:31330919..31330935
+
Hg19::chr7:31342195..31342197,+p@chr7:31342195..31342197
+
Hg19::chr7:31342221..31342227,+p@chr7:31342221..31342227
+
Hg19::chr7:31342233..31342240,+p@chr7:31342233..31342240
+
Hg19::chr7:31726791..31726798,+p2@PPP1R17
Hg19::chr7:43000472..43000514,-p@chr7:43000472..43000514
-
Hg19::chr7:54612889..54612921,+p@chr7:54612889..54612921
+
Hg19::chr7:79220418..79220423,+p@chr7:79220418..79220423
+
Hg19::chr7:79220442..79220449,+p@chr7:79220442..79220449
+
Hg19::chr7:79220491..79220512,+p@chr7:79220491..79220512
+
Hg19::chr7:79224173..79224178,+p@chr7:79224173..79224178
+
Hg19::chr7:79351016..79351020,+p@chr7:79351016..79351020
+
Hg19::chr7:79510641..79510652,+p@chr7:79510641..79510652
+
Hg19::chr7:79512462..79512500,+p@chr7:79512462..79512500
+
Hg19::chr8:104664732..104664739,+p@chr8:104664732..104664739
+
Hg19::chr8:21669826..21669866,-p6@GFRA2
Hg19::chr8:21743352..21743370,-p@chr8:21743352..21743370
-
Hg19::chr8:84824920..84824939,+p1@ENST00000523678
Hg19::chr8:85087398..85087406,-p@chr8:85087398..85087406
-
Hg19::chr8:85087424..85087449,-p@chr8:85087424..85087449
-
Hg19::chr9:120324983..120325003,-p@chr9:120324983..120325003
-
Hg19::chr9:26936427..26936432,-p@chr9:26936427..26936432
-
Hg19::chrX:12989627..12989651,+p@chrX:12989627..12989651
+
Hg19::chrX:12989653..12989663,+p@chrX:12989653..12989663
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0007399nervous system development0.000171765853094219
GO:0048731system development0.0017186126688088
GO:0007275multicellular organismal development0.00189814892299092
GO:0032502developmental process0.00343797603353163
GO:0048856anatomical structure development0.00343797603353163
GO:0032501multicellular organismal process0.00780958209236935
GO:0010468regulation of gene expression0.00780958209236935
GO:0031323regulation of cellular metabolic process0.00848662852663684
GO:0019222regulation of metabolic process0.0118067418075942
GO:0005737cytoplasm0.0143010395208181
GO:0045449regulation of transcription0.0164689418232576
GO:0007417central nervous system development0.0164689418232576
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0164689418232576
GO:0007501mesodermal cell fate specification0.0164689418232576
GO:0043231intracellular membrane-bound organelle0.0164689418232576
GO:0043227membrane-bound organelle0.0164689418232576
GO:0006350transcription0.0164689418232576
GO:0050794regulation of cellular process0.018115554288896
GO:0045165cell fate commitment0.0222460872433
GO:0048869cellular developmental process0.0222460872433
GO:0030154cell differentiation0.0222460872433
GO:0016070RNA metabolic process0.0222460872433
GO:0016167glial cell line-derived neurotrophic factor receptor activity0.0222460872433
GO:0050774negative regulation of dendrite morphogenesis0.0222460872433
GO:0006355regulation of transcription, DNA-dependent0.0235101997012121
GO:0050789regulation of biological process0.0236139168726967
GO:0006351transcription, DNA-dependent0.0247288604075228
GO:0032774RNA biosynthetic process0.0247288604075228
GO:0044424intracellular part0.0262669635116243
GO:0048814regulation of dendrite morphogenesis0.0266862685324948
GO:0043229intracellular organelle0.0286528967531669
GO:0043226organelle0.0286528967531669
GO:0010467gene expression0.0286528967531669
GO:0008266poly(U) binding0.0296413736381096
GO:0050773regulation of dendrite development0.0296413736381096
GO:0048813dendrite morphogenesis0.0296413736381096
GO:0005783endoplasmic reticulum0.0310095440878635
GO:0065007biological regulation0.0310095440878635
GO:0001537N-acetylgalactosamine 4-O-sulfotransferase activity0.0310095440878635
GO:0006911phagocytosis, engulfment0.0310095440878635
GO:0004994somatostatin receptor activity0.0310095440878635
GO:0003923GPI-anchor transamidase activity0.0310095440878635
GO:0016255attachment of GPI anchor to protein0.0310095440878635
GO:0007617mating behavior0.0348760096553614
GO:0019098reproductive behavior0.0348760096553614
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0348760096553614
GO:0005515protein binding0.0363028831603493
GO:0001710mesodermal cell fate commitment0.0374235450638049
GO:0048333mesodermal cell differentiation0.0374235450638049
GO:0045211postsynaptic membrane0.0374235450638049
GO:0042765GPI-anchor transamidase complex0.0417900332832
GO:0044456synapse part0.0418186566332716
GO:0004459L-lactate dehydrogenase activity0.0435798547184848
GO:0019642anaerobic glycolysis0.0435798547184848
GO:0005844polysome0.0435798547184848
GO:0004457lactate dehydrogenase activity0.0475412938402424



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br>disease_data<br>

Uber Anatomy
Ontology termp-valuen
sympathetic nervous system1.48e-405
autonomic nervous system1.48e-405
peripheral nervous system2.62e-238
Disease
Ontology termp-valuen
neuroendocrine tumor4.27e-346
neuroectodermal tumor3.81e-2110
germ cell and embryonal cancer1.80e-1022
germ cell cancer1.80e-1022


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10
MA0004.10.203717
MA0006.10.279671
MA0007.10.90744
MA0009.10.56092
MA0014.13.65962e-14
MA0017.10.00632628
MA0019.11.25143
MA0024.10.080176
MA0025.12.91063
MA0027.11.11339
MA0028.10.0133568
MA0029.11.13516
MA0030.10.786784
MA0031.10.220787
MA0038.10.740276
MA0040.10.209771
MA0041.10.484828
MA0042.10.608019
MA0043.10.561734
MA0046.10.315033
MA0048.10.121575
MA0050.10.35295
MA0051.11.67888
MA0052.10.100619
MA0055.11.0098
MA0056.10
MA0057.10.0942452
MA0058.10.314386
MA0059.13.43268
MA0060.10.0648382
MA0061.10.00322074
MA0063.10
MA0066.10.282439
MA0067.10.0951582
MA0068.10.929396
MA0069.10.153184
MA0070.10.290044
MA0071.10.909231
MA0072.10.282783
MA0073.15.20737e-13
MA0074.10.268235
MA0076.10.0346709
MA0077.10.131463
MA0078.10.275533
MA0081.10.0238047
MA0083.10.347011
MA0084.10.552004
MA0087.11.04222
MA0088.10.00957882
MA0089.10
MA0090.10.458291
MA0091.111.2751
MA0092.10.627943
MA0093.10.379309
MA0095.10
MA0098.10
MA0100.10.127539
MA0101.10.0826903
MA0103.10.313526
MA0105.10.00930462
MA0106.10.000158871
MA0107.10.00284349
MA0108.20.782626
MA0109.10
MA0111.13.37522
MA0113.10.000222759
MA0114.10.00454094
MA0115.10.0665923
MA0116.10.000100759
MA0117.10.0182192
MA0119.10.0811926
MA0122.10.735004
MA0124.10.764806
MA0125.10.30851
MA0130.10
MA0131.10.00472057
MA0132.10
MA0133.10
MA0135.10.954237
MA0136.10.0639719
MA0139.10.0135046
MA0140.10.183287
MA0141.10.000764633
MA0142.11.19251
MA0143.13.05638
MA0144.10.0148372
MA0145.10.000636034
MA0146.19.19486e-14
MA0147.10.157221
MA0148.10.382222
MA0149.12.0729
MA0062.20.000639583
MA0035.20.390667
MA0039.20
MA0138.20.0902553
MA0002.20.00217996
MA0137.20.0288273
MA0104.20.120089
MA0047.20.903294
MA0112.20.00213648
MA0065.20.263206
MA0150.11.02141
MA0151.10
MA0152.10.737946
MA0153.10.527332
MA0154.10.00125613
MA0155.10.000144603
MA0156.10.00063017
MA0157.10.386631
MA0158.10
MA0159.10.159454
MA0160.10.0856262
MA0161.10
MA0162.12.37597e-10
MA0163.10.000678509
MA0164.10.907862
MA0080.20.0172286
MA0018.20.0980267
MA0099.20.0702519
MA0079.21.54292e-14
MA0102.21.13935
MA0258.10.0419658
MA0259.10.139333
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
CTBP2#1488102.87692662107010.002868435675745450.0155406211308388
GATA2#2624291.69542669850030.003752528590979940.0186739569025279
NANOG#79923152.012255400069680.008525026105325370.0324931645346548
SUZ12#23512163.67822245218819.8197633091822e-060.000257615237439759



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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