Personal tools

Coexpression cluster:C58: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{Coexpression_clusters
{
|coexpression_dpi_cluster_scores_median=0,0,0

Latest revision as of 10:20, 17 September 2013


Full id: C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9



Phase1 CAGE Peaks

Hg19::chr10:128358850..128358879,-p3@C10orf90
Hg19::chr10:128358880..128358891,-p6@C10orf90
Hg19::chr10:128358905..128358916,-p10@C10orf90
Hg19::chr10:128358945..128358954,-p9@C10orf90
Hg19::chr10:133584167..133584176,+p@chr10:133584167..133584176
+
Hg19::chr10:133584190..133584202,+p@chr10:133584190..133584202
+
Hg19::chr10:29811702..29811713,-p34@SVIL
Hg19::chr10:700369..700374,-p@chr10:700369..700374
-
Hg19::chr10:89577589..89577596,-p7@ATAD1
Hg19::chr11:12398076..12398108,+p@chr11:12398076..12398108
+
Hg19::chr11:12398115..12398128,+p@chr11:12398115..12398128
+
Hg19::chr11:126225900..126225954,+p3@ST3GAL4
Hg19::chr11:48066945..48066951,+p@chr11:48066945..48066951
+
Hg19::chr11:68816541..68816554,+p4@TPCN2
Hg19::chr11:88911033..88911049,+p1@TYR
Hg19::chr11:88911074..88911102,+p2@TYR
Hg19::chr11:88911848..88911856,+p@chr11:88911848..88911856
+
Hg19::chr12:124850646..124850656,-p@chr12:124850646..124850656
-
Hg19::chr12:125305957..125305968,-p@chr12:125305957..125305968
-
Hg19::chr12:12938328..12938349,+p9@APOLD1
Hg19::chr12:18782689..18782690,+p@chr12:18782689..18782690
+
Hg19::chr12:20725009..20725050,+p10@PDE3A
Hg19::chr12:56121498..56121521,-p25@CD63
Hg19::chr12:56121580..56121604,-p17@CD63
Hg19::chr12:56121612..56121634,-p19@CD63
Hg19::chr12:56347889..56347893,+p@chr12:56347889..56347893
+
Hg19::chr12:56349314..56349330,-p@chr12:56349314..56349330
-
Hg19::chr12:56349406..56349415,-p@chr12:56349406..56349415
-
Hg19::chr12:56349991..56350009,-p10@PMEL
Hg19::chr12:56350792..56350801,-p16@PMEL
Hg19::chr12:56350809..56350818,+p@chr12:56350809..56350818
+
Hg19::chr12:56350891..56350902,-p@chr12:56350891..56350902
-
Hg19::chr12:56350929..56350943,-p@chr12:56350929..56350943
-
Hg19::chr12:56351078..56351092,-p@chr12:56351078..56351092
-
Hg19::chr12:56351122..56351134,-p9@PMEL
Hg19::chr12:56351139..56351147,-p19@PMEL
Hg19::chr12:56351157..56351164,-p22@PMEL
Hg19::chr12:56351196..56351222,-p7@PMEL
Hg19::chr12:56351230..56351243,-p15@PMEL
Hg19::chr12:56351803..56351813,-p@chr12:56351803..56351813
-
Hg19::chr12:56351862..56351871,-p@chr12:56351862..56351871
-
Hg19::chr12:56352368..56352379,-p13@PMEL
Hg19::chr12:56359816..56359833,-p1@PMEL
Hg19::chr12:56360605..56360636,+p1@CDK2
Hg19::chr12:56360642..56360664,+p4@CDK2
Hg19::chr12:56361044..56361056,+p15@CDK2
Hg19::chr12:56364867..56364892,+p7@CDK2
Hg19::chr12:85380605..85380628,+p@chr12:85380605..85380628
+
Hg19::chr12:9560067..9560068,-p@chr12:9560067..9560068
-
Hg19::chr12:9721581..9721590,+p@chr12:9721581..9721590
+
Hg19::chr13:102611454..102611460,-p@chr13:102611454..102611460
-
Hg19::chr13:103433284..103433289,+p@chr13:103433284..103433289
+
Hg19::chr13:113698772..113698791,+p18@MCF2L
Hg19::chr13:113698799..113698819,+p15@MCF2L
Hg19::chr13:113698895..113698898,+p45@MCF2L
Hg19::chr13:113698911..113698924,+p16@MCF2L
Hg19::chr13:21276825..21276861,+p@chr13:21276825..21276861
+
Hg19::chr13:21276901..21276911,+p@chr13:21276901..21276911
+
Hg19::chr13:41635759..41635774,-p21@ELF1
Hg19::chr13:49155318..49155336,+p@chr13:49155318..49155336
+
Hg19::chr13:49155339..49155364,+p@chr13:49155339..49155364
+
Hg19::chr13:95092079..95092089,-p@chr13:95092079..95092089
-
Hg19::chr13:95092141..95092159,-p@chr13:95092141..95092159
-
Hg19::chr13:95092257..95092282,-p@chr13:95092257..95092282
-
Hg19::chr13:95118885..95118894,-p@chr13:95118885..95118894
-
Hg19::chr13:95121132..95121142,-p9@DCT
Hg19::chr13:95131276..95131338,-p1@CU688450
Hg19::chr14:25065045..25065064,+p1@ENST00000557736
Hg19::chr14:32545064..32545095,+p4@ARHGAP5
Hg19::chr15:28344426..28344431,-p2@OCA2
Hg19::chr15:28360788..28360789,-p@chr15:28360788..28360789
-
Hg19::chr15:28360793..28360804,-p@chr15:28360793..28360804
-
Hg19::chr15:28360922..28360926,-p@chr15:28360922..28360926
-
Hg19::chr15:31370137..31370148,-p@chr15:31370137..31370148
-
Hg19::chr15:31370168..31370177,-p@chr15:31370168..31370177
-
Hg19::chr15:31393917..31393936,-p1@TRPM1
Hg19::chr15:33440518..33440555,-p@chr15:33440518..33440555
-
Hg19::chr15:42694534..42694544,+p15@CAPN3
Hg19::chr15:48388885..48388923,-p@chr15:48388885..48388923
-
Hg19::chr15:48413179..48413208,+p1@SLC24A5
Hg19::chr15:48413211..48413239,+p2@SLC24A5
Hg19::chr15:55562387..55562396,-p10@RAB27A
Hg19::chr15:55562400..55562416,-p9@RAB27A
Hg19::chr15:55562479..55562490,-p12@RAB27A
Hg19::chr15:55562496..55562505,-p13@RAB27A
Hg19::chr15:55562567..55562578,-p5@RAB27A
Hg19::chr15:55562582..55562617,-p3@RAB27A
Hg19::chr15:55562632..55562652,-p7@RAB27A
Hg19::chr15:55562656..55562664,-p14@RAB27A
Hg19::chr15:55563100..55563135,-p4@RAB27A
Hg19::chr15:93221419..93221434,-p@chr15:93221419..93221434
-
Hg19::chr16:1521744..1521788,-p@chr16:1521744..1521788
-
Hg19::chr16:29819122..29819141,+p34@MAZ
Hg19::chr16:69176102..69176122,+p@chr16:69176102..69176122
+
Hg19::chr17:18853199..18853231,+p@chr17:18853199..18853231
+
Hg19::chr17:77923816..77923828,-p@chr17:77923816..77923828
-
Hg19::chr17:77925732..77925744,-p@chr17:77925732..77925744
-
Hg19::chr17:77925835..77925864,+p@chr17:77925835..77925864
+
Hg19::chr17:79609296..79609335,+p2@TSPAN10
Hg19::chr17:79609341..79609358,+p1@TSPAN10
Hg19::chr18:55888551..55888595,+p24@NEDD4L
Hg19::chr19:1169092..1169103,-p@chr19:1169092..1169103
-
Hg19::chr19:29374434..29374443,+p@chr19:29374434..29374443
+
Hg19::chr19:3508220..3508222,+p@chr19:3508220..3508222
+
Hg19::chr19:3547320..3547327,+p@chr19:3547320..3547327
+
Hg19::chr19:3548134..3548169,+p@chr19:3548134..3548169
+
Hg19::chr19:36027660..36027671,+p@chr19:36027660..36027671
+
Hg19::chr19:36027740..36027747,+p@chr19:36027740..36027747
+
Hg19::chr19:36027761..36027786,+p@chr19:36027761..36027786
+
Hg19::chr19:49232649..49232659,-p6@RASIP1
Hg19::chr1:152178320..152178327,+p1@ENST00000429352
Hg19::chr1:207082874..207082909,-p@chr1:207082874..207082909
-
Hg19::chr1:207082917..207082938,-p@chr1:207082917..207082938
-
Hg19::chr1:207083104..207083127,-p7@FAIM3
Hg19::chr1:212594718..212594723,+p@chr1:212594718..212594723
+
Hg19::chr1:212594743..212594757,+p@chr1:212594743..212594757
+
Hg19::chr1:216219005..216219021,+p@chr1:216219005..216219021
+
Hg19::chr1:2487932..2487943,+p10@TNFRSF14
Hg19::chr1:2489000..2489018,+p13@TNFRSF14
Hg19::chr1:2489027..2489046,+p17@TNFRSF14
Hg19::chr1:2489047..2489054,+p24@TNFRSF14
Hg19::chr1:2491291..2491303,+p18@TNFRSF14
Hg19::chr1:2491322..2491336,+p16@TNFRSF14
Hg19::chr1:79215652..79215659,+p@chr1:79215652..79215659
+
Hg19::chr22:19938419..19938432,+p26@COMT
Hg19::chr22:26878129..26878141,-p12@HPS4
Hg19::chr22:26878167..26878178,-p16@HPS4
Hg19::chr22:26878182..26878233,-p5@HPS4
Hg19::chr22:38368691..38368700,-p@chr22:38368691..38368700
-
Hg19::chr2:114581429..114581464,-p@chr2:114581429..114581464
-
Hg19::chr2:11752360..11752376,+p3@GREB1
Hg19::chr2:11752415..11752445,+p2@GREB1
Hg19::chr2:12856642..12856654,+p28@TRIB2
Hg19::chr2:12857320..12857334,+p14@TRIB2
Hg19::chr2:128641937..128641957,-p@chr2:128641937..128641957
-
Hg19::chr2:128642165..128642176,+p@chr2:128642165..128642176
+
Hg19::chr2:128642195..128642207,+p@chr2:128642195..128642207
+
Hg19::chr2:128642255..128642269,+p@chr2:128642255..128642269
+
Hg19::chr2:128642287..128642297,+p@chr2:128642287..128642297
+
Hg19::chr2:145780726..145780735,+p1@ENST00000451478
Hg19::chr2:145780741..145780759,+p2@ENST00000420472
Hg19::chr2:145780767..145780811,+p1@ENST00000420472
Hg19::chr2:166702601..166702625,-p2@ENST00000428888
Hg19::chr2:166702701..166702714,-p1@ENST00000428888
Hg19::chr2:191115237..191115258,-p9@HIBCH
Hg19::chr2:202285303..202285324,-p7@TRAK2
Hg19::chr2:224824613..224824666,+p@chr2:224824613..224824666
+
Hg19::chr2:37551788..37551799,-p12@PRKD3
Hg19::chr2:37551812..37551828,-p4@PRKD3
Hg19::chr2:37569921..37569952,+p@chr2:37569921..37569952
+
Hg19::chr2:37569959..37569973,+p@chr2:37569959..37569973
+
Hg19::chr2:37594367..37594376,+p12@QPCT
Hg19::chr2:37594377..37594388,+p10@QPCT
Hg19::chr2:37594397..37594409,+p5@QPCT
Hg19::chr2:53161742..53161748,-p@chr2:53161742..53161748
-
Hg19::chr3:108964494..108964500,-p@chr3:108964494..108964500
-
Hg19::chr3:16025028..16025044,+p@chr3:16025028..16025044
+
Hg19::chr3:16025137..16025147,+p@chr3:16025137..16025147
+
Hg19::chr3:43498948..43498958,-p@chr3:43498948..43498958
-
Hg19::chr3:46000129..46000130,-p10@FYCO1
Hg19::chr3:46000146..46000161,-p3@FYCO1
Hg19::chr3:69985734..69985749,+p2@MITF
Hg19::chr3:69985792..69985803,+p7@MITF
Hg19::chr3:69988248..69988289,+p@chr3:69988248..69988289
+
Hg19::chr4:14889801..14889805,-p1@ENST00000505089
p1@uc003gne.2
p1@uc003gnf.2
Hg19::chr4:3387459..3387478,+p7@RGS12
Hg19::chr4:3387594..3387615,+p18@RGS12
Hg19::chr4:3387801..3387823,+p16@RGS12
Hg19::chr4:4343807..4343817,+p@chr4:4343807..4343817
+
Hg19::chr4:4343850..4343857,+p@chr4:4343850..4343857
+
Hg19::chr4:7142992..7143002,+p@chr4:7142992..7143002
+
Hg19::chr5:156015602..156015609,+p@chr5:156015602..156015609
+
Hg19::chr5:17129858..17129896,+p@chr5:17129858..17129896
+
Hg19::chr5:32843676..32843681,+p@chr5:32843676..32843681
+
Hg19::chr5:33984741..33984774,-p1@SLC45A2
Hg19::chr5:33984786..33984820,-p2@SLC45A2
Hg19::chr5:39462221..39462233,-p33@DAB2
Hg19::chr5:39462245..39462252,-p50@DAB2
Hg19::chr5:39462267..39462297,-p9@DAB2
Hg19::chr5:39462298..39462311,-p27@DAB2
Hg19::chr5:39462336..39462343,-p49@DAB2
Hg19::chr5:39462348..39462359,-p41@DAB2
Hg19::chr5:8839965..8839971,+p1@ENST00000510067
p1@uc003jej.2
Hg19::chr6:10528560..10528589,+p5@GCNT2
Hg19::chr6:10528595..10528622,+p3@GCNT2
Hg19::chr6:10528638..10528647,+p17@GCNT2
Hg19::chr6:139349616..139349629,+p5@C6orf115
Hg19::chr6:139349636..139349663,+p3@C6orf115
Hg19::chr6:139370365..139370372,+p@chr6:139370365..139370372
+
Hg19::chr6:29716766..29716777,-p2@HLA-F-AS1
Hg19::chr6:4610818..4610830,+p1@uc010jns.1
Hg19::chr6:4610857..4610862,+p2@uc010jns.1
Hg19::chr6:4610888..4610895,+p2@ENST00000380106
Hg19::chr6:4610902..4610913,+p1@ENST00000380106
Hg19::chr6:53964336..53964352,+p4@MLIP
Hg19::chr7:104398152..104398162,-p1@ENST00000433514
Hg19::chr7:20686946..20686958,+p1@ABCB5
Hg19::chr7:20686977..20686980,+p4@ABCB5
Hg19::chr7:20686988..20686999,+p3@ABCB5
Hg19::chr7:20687017..20687030,+p2@ABCB5
Hg19::chr7:20700591..20700601,+p@chr7:20700591..20700601
+
Hg19::chr7:20703657..20703681,+p@chr7:20703657..20703681
+
Hg19::chr8:12651797..12651804,+p29@KIAA1456
Hg19::chr8:12651821..12651829,+p24@KIAA1456
Hg19::chr8:144918542..144918553,-p@chr8:144918542..144918553
-
Hg19::chr8:29605842..29605856,+p1@ENST00000523123
p1@uc003xho.2
p1@uc003xhp.2
Hg19::chr8:29605860..29605870,+p3@ENST00000517491
Hg19::chr8:29605879..29605888,+p5@ENST00000517491
Hg19::chr8:29605929..29605934,+p4@ENST00000517491
Hg19::chr8:29605937..29605953,+p2@ENST00000517491
Hg19::chr8:29605959..29605973,+p1@ENST00000517491
Hg19::chr8:62438700..62438702,-p28@ASPH
Hg19::chr8:62438762..62438775,-p20@ASPH
Hg19::chr8:62438804..62438812,-p26@ASPH
Hg19::chr8:95690444..95690464,+p@chr8:95690444..95690464
+
Hg19::chr8:95690467..95690509,+p@chr8:95690467..95690509
+
Hg19::chr9:103191797..103191807,+p22@C9orf30
Hg19::chr9:12693225..12693228,+p17@TYRP1
Hg19::chr9:12693260..12693263,+p37@TYRP1
Hg19::chr9:12693272..12693281,+p25@TYRP1
Hg19::chr9:12693291..12693298,+p33@TYRP1
Hg19::chr9:12693305..12693317,+p10@TYRP1
Hg19::chr9:12693336..12693460,+p1@TYRP1
Hg19::chr9:12693544..12693551,+p26@TYRP1
Hg19::chr9:12693929..12693940,+p6@TYRP1
Hg19::chr9:12694192..12694201,+p13@TYRP1
Hg19::chr9:12694221..12694237,+p2@TYRP1
Hg19::chr9:12695566..12695573,+p28@TYRP1
Hg19::chr9:12695585..12695593,+p24@TYRP1
Hg19::chr9:12695588..12695604,-p@chr9:12695588..12695604
-
Hg19::chr9:12695633..12695642,-p@chr9:12695633..12695642
-
Hg19::chr9:12695636..12695648,+p11@TYRP1
Hg19::chr9:12695659..12695660,+p31@TYRP1
Hg19::chr9:12695674..12695681,+p36@TYRP1
Hg19::chr9:12695702..12695719,+p3@TYRP1
Hg19::chr9:12695726..12695759,+p5@TYRP1
Hg19::chr9:12695764..12695782,+p7@TYRP1
Hg19::chr9:12695789..12695802,+p14@TYRP1
Hg19::chr9:12698311..12698315,+p39@TYRP1
Hg19::chr9:12698444..12698487,+p8@TYRP1
Hg19::chr9:12698499..12698524,+p9@TYRP1
Hg19::chr9:12698542..12698573,+p16@TYRP1
Hg19::chr9:12698593..12698608,+p20@TYRP1
Hg19::chr9:12701182..12701196,+p19@TYRP1
Hg19::chr9:12701203..12701216,+p18@TYRP1
Hg19::chr9:12701221..12701232,+p30@TYRP1
Hg19::chr9:12701618..12701630,+p44@TYRP1
Hg19::chr9:12701691..12701717,+p34@TYRP1
Hg19::chr9:12702314..12702344,+p@chr9:12702314..12702344
+
Hg19::chr9:12702367..12702377,+p@chr9:12702367..12702377
+
Hg19::chr9:12702379..12702409,+p@chr9:12702379..12702409
+
Hg19::chr9:12704281..12704285,+p@chr9:12704281..12704285
+
Hg19::chr9:12704349..12704362,+p@chr9:12704349..12704362
+
Hg19::chr9:12704523..12704531,+p@chr9:12704523..12704531
+
Hg19::chr9:12704539..12704547,+p@chr9:12704539..12704547
+
Hg19::chr9:12704603..12704616,+p@chr9:12704603..12704616
+
Hg19::chr9:12704666..12704671,+p@chr9:12704666..12704671
+
Hg19::chr9:12708011..12708027,+p27@TYRP1
Hg19::chr9:12708060..12708071,-p@chr9:12708060..12708071
-
Hg19::chr9:12708124..12708130,-p@chr9:12708124..12708130
-
Hg19::chr9:12708131..12708142,-p@chr9:12708131..12708142
-
Hg19::chr9:12708978..12708990,+p@chr9:12708978..12708990
+
Hg19::chr9:12709003..12709034,-p@chr9:12709003..12709034
-
Hg19::chr9:12709019..12709029,+p@chr9:12709019..12709029
+
Hg19::chr9:12709173..12709185,+p@chr9:12709173..12709185
+
Hg19::chr9:12709200..12709209,+p@chr9:12709200..12709209
+
Hg19::chr9:12709332..12709345,+p@chr9:12709332..12709345
+
Hg19::chr9:12709393..12709400,+p@chr9:12709393..12709400
+
Hg19::chr9:12709766..12709773,+p@chr9:12709766..12709773
+
Hg19::chr9:12709809..12709819,+p@chr9:12709809..12709819
+
Hg19::chr9:12710363..12710372,+p@chr9:12710363..12710372
+
Hg19::chr9:12711113..12711142,+p@chr9:12711113..12711142
+
Hg19::chr9:12711354..12711364,+p@chr9:12711354..12711364
+
Hg19::chr9:12711574..12711585,+p@chr9:12711574..12711585
+
Hg19::chr9:12711878..12711885,+p@chr9:12711878..12711885
+
Hg19::chr9:12711969..12711978,+p@chr9:12711969..12711978
+
Hg19::chr9:12712159..12712169,+p@chr9:12712159..12712169
+
Hg19::chr9:12712242..12712247,+p@chr9:12712242..12712247
+
Hg19::chr9:15850201..15850216,+p5@C9orf93
Hg19::chr9:5890872..5890902,+p1@MLANA
Hg19::chr9:5892516..5892527,+p3@MLANA
Hg19::chr9:5897549..5897564,+p4@MLANA
Hg19::chr9:5897587..5897603,+p2@MLANA
Hg19::chr9:5897612..5897613,+p6@MLANA
Hg19::chr9:5906938..5906951,+p@chr9:5906938..5906951
+
Hg19::chr9:5909554..5909563,+p@chr9:5909554..5909563
+
Hg19::chr9:5911420..5911427,+p@chr9:5911420..5911427
+
Hg19::chr9:5911554..5911558,+p@chr9:5911554..5911558
+
Hg19::chrX:125606845..125606851,+p5@MTND4P24
Hg19::chrX:133340200..133340206,+p@chrX:133340200..133340206
+
Hg19::chrX:40005796..40005807,-p25@BCOR
Hg19::chrX:48121210..48121215,+p@chrX:48121210..48121215
+
Hg19::chrX:9707625..9707629,-p6@GPR143
Hg19::chrX:9715046..9715050,-p@chrX:9715046..9715050
-
Hg19::chrX:9733879..9733897,-p1@GPR143
Hg19::chrX:9733914..9733919,-p4@GPR143
Hg19::chrX:9734013..9734027,-p5@GPR143
Hg19::chrY:14230731..14230736,-p@chrY:14230731..14230736
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
8.03848239734226e-070.000508835935751765441Tyrosine metabolism (KEGG):00350
2.9998725986943e-050.009494596774867454101Melanogenesis (KEGG):04916



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0045009chitosome1.01550561555299e-15
GO:0033162melanosome membrane1.01550561555299e-15
GO:0048770pigment granule2.0127813577785e-13
GO:0042470melanosome2.0127813577785e-13
GO:0046148pigment biosynthetic process9.16657857646154e-10
GO:0048069eye pigmentation1.09223589456247e-09
GO:0048066pigmentation during development1.09223589456247e-09
GO:0042440pigment metabolic process1.28656442500503e-09
GO:0042438melanin biosynthetic process2.24898991768669e-09
GO:0006583melanin biosynthetic process from tyrosine2.24898991768669e-09
GO:0019748secondary metabolic process4.05189448198049e-09
GO:0006582melanin metabolic process4.36891639684899e-09
GO:0031410cytoplasmic vesicle6.77732025937624e-09
GO:0031982vesicle7.37543217418518e-09
GO:0016023cytoplasmic membrane-bound vesicle2.31196890711952e-08
GO:0031988membrane-bound vesicle2.45751310409556e-08
GO:0006570tyrosine metabolic process1.19370324868788e-07
GO:0030659cytoplasmic vesicle membrane1.65130678029567e-07
GO:0044433cytoplasmic vesicle part1.75340061229367e-07
GO:0012506vesicle membrane2.26077734734176e-07
GO:0042441eye pigment metabolic process2.26077734734176e-07
GO:0006726eye pigment biosynthetic process2.26077734734176e-07
GO:0005737cytoplasm1.87106705033339e-06
GO:0016020membrane3.04899380799492e-06
GO:0009072aromatic amino acid family metabolic process1.02917455232679e-05
GO:0044444cytoplasmic part7.61692228091255e-05
GO:0006725aromatic compound metabolic process8.94339243027082e-05
GO:0012505endomembrane system0.000123166212943886
GO:0016021integral to membrane0.000156493734980448
GO:0031224intrinsic to membrane0.000169024544737753
GO:0009308amine metabolic process0.000324428666777075
GO:0031090organelle membrane0.000350535978297858
GO:0006807nitrogen compound metabolic process0.000458947234800906
GO:0044425membrane part0.000637281098808289
GO:0006519amino acid and derivative metabolic process0.00126165692039151
GO:0044424intracellular part0.00133592842829585
GO:0032501multicellular organismal process0.00358674910664708
GO:0032502developmental process0.00358674910664708
GO:0005624membrane fraction0.00374764391159449
GO:0045807positive regulation of endocytosis0.00379983817690436
GO:0006520amino acid metabolic process0.00536881457738956
GO:0044464cell part0.00536881457738956
GO:0005507copper ion binding0.00679192261221231
GO:0043231intracellular membrane-bound organelle0.00728675590190563
GO:0043227membrane-bound organelle0.00728675590190563
GO:0030100regulation of endocytosis0.0119569322366124
GO:0000267cell fraction0.0128265022808157
GO:0051050positive regulation of transport0.0128265022808157
GO:0042803protein homodimerization activity0.0128265022808157
GO:0042802identical protein binding0.0128265022808157
GO:0006369transcription termination from RNA polymerase II promoter0.0128265022808157
GO:0048075positive regulation of eye pigmentation0.0128265022808157
GO:0035173histone kinase activity0.0128265022808157
GO:0005395eye pigment precursor transporter activity0.0128265022808157
GO:0015173aromatic amino acid transmembrane transporter activity0.0128265022808157
GO:0005302L-tyrosine transmembrane transporter activity0.0128265022808157
GO:0016603glutaminyl-peptide cyclotransferase activity0.0128265022808157
GO:0004503monophenol monooxygenase activity0.0128265022808157
GO:0048073regulation of eye pigmentation0.0128265022808157
GO:00038603-hydroxyisobutyryl-CoA hydrolase activity0.0128265022808157
GO:0048087positive regulation of pigmentation0.0128265022808157
GO:0016206catechol O-methyltransferase activity0.0128265022808157
GO:0043229intracellular organelle0.0184456068227657
GO:0005622intracellular0.0184456068227657
GO:0043226organelle0.0184456068227657
GO:0005764lysosome0.0210082571779636
GO:0000323lytic vacuole0.0210082571779636
GO:0015746citrate transport0.0211930623408738
GO:0016716oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen0.0211930623408738
GO:0006842tricarboxylic acid transport0.0211930623408738
GO:0004119cGMP-inhibited cyclic-nucleotide phosphodiesterase activity0.0211930623408738
GO:0015137citrate transmembrane transporter activity0.0211930623408738
GO:0048070regulation of pigmentation during development0.0211930623408738
GO:0015105arsenite transmembrane transporter activity0.0211930623408738
GO:0015142tricarboxylic acid transmembrane transporter activity0.0211930623408738
GO:0007601visual perception0.0241687437842909
GO:0050953sensory perception of light stimulus0.0241687437842909
GO:0003008system process0.0258990309458589
GO:0005773vacuole0.0258990309458589
GO:0006810transport0.0258990309458589
GO:0019752carboxylic acid metabolic process0.0258990309458589
GO:0006082organic acid metabolic process0.0258990309458589
GO:0003836beta-galactoside alpha-2,3-sialyltransferase activity0.0258990309458589
GO:0042827platelet dense granule0.0258990309458589
GO:0004167dopachrome isomerase activity0.0258990309458589
GO:0006883cellular sodium ion homeostasis0.0258990309458589
GO:0050858negative regulation of antigen receptor-mediated signaling pathway0.0258990309458589
GO:0042420dopamine catabolic process0.0258990309458589
GO:0042424catecholamine catabolic process0.0258990309458589
GO:0017080sodium channel regulator activity0.0258990309458589
GO:0050860negative regulation of T cell receptor signaling pathway0.0258990309458589
GO:0055078sodium ion homeostasis0.0258990309458589
GO:0051234establishment of localization0.0302620967249725
GO:0008109N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity0.0334203989349797
GO:0043034costamere0.0334203989349797
GO:0007089traversing start control point of mitotic cell cycle0.041314188255513
GO:0009310amine catabolic process0.0420576545969071
GO:0044270nitrogen compound catabolic process0.0433574730002079
GO:0050811GABA receptor binding0.0475638460819058
GO:0050856regulation of T cell receptor signaling pathway0.0475638460819058



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br><br>disease_data<br>

Disease
Ontology termp-valuen
melanoma1.70e-362


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10
MA0004.10.717358
MA0006.10.00176676
MA0007.10.00246364
MA0009.10.460135
MA0014.10
MA0017.10.654455
MA0019.10.0416867
MA0024.10.0237023
MA0025.10.173427
MA0027.10.983911
MA0028.10.000771358
MA0029.10.266604
MA0030.11.33236
MA0031.10.727711
MA0038.10.362691
MA0040.10.435431
MA0041.10.858766
MA0042.10.222531
MA0043.10.0676196
MA0046.10.432425
MA0048.11.95365e-05
MA0050.10.161568
MA0051.10.0659311
MA0052.10.446198
MA0055.12.61085e-07
MA0056.10
MA0057.11.04232e-06
MA0058.10.895365
MA0059.10.882141
MA0060.10.00207587
MA0061.10.0114157
MA0063.10
MA0066.10.262356
MA0067.10.186524
MA0068.10.145755
MA0069.14.19687
MA0070.10.596694
MA0071.10.0650326
MA0072.10.0514636
MA0073.10
MA0074.10.168522
MA0076.19.41686e-05
MA0077.10.218983
MA0078.10.143036
MA0081.11.03193
MA0083.10.0718285
MA0084.10.379195
MA0087.11.75626
MA0088.10.00282037
MA0089.10
MA0090.10.00658647
MA0091.10.0605364
MA0092.10.293707
MA0093.10.554678
MA0095.10
MA0098.10
MA0100.10.0111838
MA0101.10.110495
MA0103.10.185119
MA0105.15.60304e-06
MA0106.10.0733302
MA0107.10.16615
MA0108.20.361512
MA0109.10
MA0111.10.00976617
MA0113.10.151332
MA0114.10.111011
MA0115.10.555043
MA0116.10.000296537
MA0117.10.0307205
MA0119.13.31375
MA0122.10.409135
MA0124.10.467724
MA0125.11.92703
MA0130.10
MA0131.10.00964426
MA0132.10
MA0133.10
MA0135.10.791653
MA0136.10.517868
MA0139.15.45797e-05
MA0140.12.19693
MA0141.10.0272498
MA0142.11.27033
MA0143.10.23275
MA0144.10.0251218
MA0145.12.60215e-05
MA0146.12.81294e-13
MA0147.10.19831
MA0148.10.477796
MA0149.10.000223487
MA0062.24.24908e-06
MA0035.20.845162
MA0039.20
MA0138.20.043688
MA0002.21.23592
MA0137.20.0144351
MA0104.20.029057
MA0047.20.251216
MA0112.22.76787e-05
MA0065.20.0165099
MA0150.10.22586
MA0151.10
MA0152.12.57817
MA0153.10.285585
MA0154.10.000392395
MA0155.13.05612e-06
MA0156.10.757668
MA0157.10.657964
MA0158.10
MA0159.10.0216555
MA0160.10.331487
MA0161.10
MA0162.10
MA0163.16.11297e-12
MA0164.15.17656
MA0080.20.460955
MA0018.20.289601
MA0099.20.451791
MA0079.20
MA0102.20.136875
MA0258.10.195633
MA0259.10.0425291
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=Coexpression_cluster:C58&oldid=3067176"