FFCP PHASE1:Mm9::chrX:148776976..148777000,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=52808|HGNC=|MCL_coexpression_id=2616|UniProt=Q7TQI8|association_with_transcript=-8bp_to_ENSMUST00000044509,ENSMUST00000138918,ENSMUST00000149685_5end|description=CAGE_peak_1_at_Tspyl2_5end|id=chrX:148776976..148777000,-|ontology_enrichment_celltype=CL:0000393!4.54e-14!39;CL:0000211!4.54e-14!39;CL:0000540!6.14e-12!33;CL:0000047!6.14e-12!33;CL:0000031!6.14e-12!33;CL:0000404!6.14e-12!33;CL:0000055!1.07e-10!50;CL:0000221!7.84e-10!44;CL:0000133!7.84e-10!44;CL:0002319!1.65e-09!43;CL:0000117!2.08e-08!23;CL:0000337!2.08e-08!23|ontology_enrichment_celltype_v019_2=CL:0000393,4.54e-14,39;CL:0000211,4.54e-14,39;CL:0000540,6.14e-12,33;CL:0000047,6.14e-12,33;CL:0000031,6.14e-12,33;CL:0000404,6.14e-12,33;CL:0000221,7.84e-10,44;CL:0000133,7.84e-10,44;CL:0002319,1.65e-09,43;CL:0000117,2.08e-08,23;CL:0000337,2.08e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.86e-26!73;UBERON:0005743!5.86e-26!73;UBERON:0000073!2.48e-25!75;UBERON:0001016!2.48e-25!75;UBERON:0004121!8.57e-21!102;UBERON:0000924!8.57e-21!102;UBERON:0006601!8.57e-21!102;UBERON:0000955!1.52e-19!50;UBERON:0006238!1.52e-19!50;UBERON:0001049!1.57e-19!52;UBERON:0005068!1.57e-19!52;UBERON:0006241!1.57e-19!52;UBERON:0007135!1.57e-19!52;UBERON:0002616!6.05e-19!49;UBERON:0002346!9.91e-19!71;UBERON:0003075!9.91e-19!71;UBERON:0007284!9.91e-19!71;UBERON:0000033!2.09e-18!63;UBERON:0003080!2.37e-15!40;UBERON:0002780!1.14e-14!39;UBERON:0001890!1.14e-14!39;UBERON:0006240!1.14e-14!39;UBERON:0003056!3.07e-14!49;UBERON:0002020!3.94e-13!34;UBERON:0007811!1.59e-12!86;UBERON:0000153!2.24e-12!94;UBERON:0002791!2.28e-11!29;UBERON:0003528!2.28e-11!29;UBERON:0001893!2.28e-11!29;UBERON:0004111!1.84e-08!122;UBERON:0000025!1.21e-07!114;UBERON:0000956!2.06e-07!21;UBERON:0001869!2.06e-07!21;UBERON:0000203!2.06e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.86e-26,73;UBERON:0001016,2.48e-25,75;UBERON:0004121,4.07e-21,95;UBERON:0000924,4.07e-21,95;UBERON:0006601,4.07e-21,95;UBERON:0000073,6.55e-21,54;UBERON:0001049,1.57e-19,52;UBERON:0005068,1.57e-19,52;UBERON:0006241,1.57e-19,52;UBERON:0007135,1.57e-19,52;UBERON:0002346,1.61e-19,64;UBERON:0003075,1.61e-19,64;UBERON:0007284,1.61e-19,64;UBERON:0000955,1.58e-17,47;UBERON:0006238,1.58e-17,47;UBERON:0010371,2.02e-17,73;UBERON:0002616,6.07e-17,46;UBERON:0003080,2.37e-15,40;UBERON:0002780,1.14e-14,39;UBERON:0001890,1.14e-14,39;UBERON:0006240,1.14e-14,39;UBERON:0003056,3.07e-14,49;UBERON:0010314,1.89e-13,92;UBERON:0002020,3.94e-13,34;UBERON:0003528,2.28e-11,29;UBERON:0002791,2.28e-11,29;UBERON:0001893,2.28e-11,29;UBERON:0004111,1.84e-08,122;UBERON:0000025,1.21e-07,114;UBERON:0000956,2.06e-07,21;UBERON:0001869,2.06e-07,21;UBERON:0000203,2.06e-07,21|phase1_expression=21.9403920533568,0.348975407639361,0.909998478779072,0.30246421130683,0,4.70061961353291,5.60670337429262,35.8962839167582,24.3564489322383,26.6833560007073,11.4716038711088,11.0085579413564,22.427295620988,26.9254839450512,6.66219523631325,5.66930748691513,3.49780939064073,11.1989068702174,11.6547268564878,11.0341309467488,24.322380983206,6.55320277925843,7.31359409589019,2.3998863419011,2.75291137280604,1.72269589234506,1.29228598847722,1.50829862880122,0.760093677825496,2.52030129759931,3.76941868114018,6.98533740805594,5.53558308826113,0,7.22129049378186,3.32469290716985,4.90006455029686,5.4409111995798,9.37602413428561,5.75876118371178,7.64700934440319,10.2456822743767,6.311634589405,36.0064899410151,35.2791720643911,34.8738829107195,21.9069576417451,6.32272953503295,12.3024262331304,14.1933826324227,13.5786828976602,14.3752564364972,23.6573474541408,22.4862264023517,34.6176613116738,20.8380143189117,23.4957420749781,18.5641953219879,19.8270131642406,20.1016572123373,17.747279298173,16.2645375393183,9.78224275722253,17.0980946283466,6.92206453796882,12.0781619540837,12.583204641773,12.2949857702897,19.9084055632277,17.4157660447881,16.4053469854078,27.1368435183613,28.4920417827581,16.4137670948038,19.7441670297567,15.6267193723704,55.0579404996944,70.6110979611088,79.1073646269654,29.1468695883728,22.4144726825904,26.045668527838,77.8920567213853,87.2282045549104,86.1782117461209,20.9186295686304,28.1895927982224,25.9095229697168,10.677393259979,14.7364542208232,23.1891590961342,3.44169550792555,15.6393406752783,10.2543606411185,5.84798775702902,4.92829575807069,8.00533194750986,18.7473354835864,16.6263042945836,13.0735642568826,25.3518155598025,26.9485602570067,107.018200676791,63.9960032837998,4.11332977921307,3.29367825117628,5.05524445014783,8.33542321949138,13.7237078333001,32.3603863161318,11.1030609130327,10.9607572192371,9.68585088475446,14.6200961336044,19.4021366773913,15.5826573248798,6.67426412882809,12.5801440520323,5.30766331169925,11.3236794963186,12.1462835153216,9.69750506270444,7.45567044872489,38.9398460025358,47.5444024466543,4.08731288333746,11.6220670770743,5.39912457894067,11.1821799824297,86.2794082971779,57.6450759551469,37.8219599859722,46.0634448509533,45.77306686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| ||
|EntrezGene=52808 | |||
|HGNC= | |||
|MCL_coexpression_id=2616 | |||
|UniProt=Q7TQI8 | |||
|association_with_transcript=-8bp_to_ENSMUST00000044509,ENSMUST00000138918,ENSMUST00000149685_5end | |||
|description=CAGE_peak_1_at_Tspyl2_5end | |||
|id=chrX:148776976..148777000,- | |||
|ontology_enrichment_celltype=CL:0000393!4.54e-14!39;CL:0000211!4.54e-14!39;CL:0000540!6.14e-12!33;CL:0000047!6.14e-12!33;CL:0000031!6.14e-12!33;CL:0000404!6.14e-12!33;CL:0000055!1.07e-10!50;CL:0000221!7.84e-10!44;CL:0000133!7.84e-10!44;CL:0002319!1.65e-09!43;CL:0000117!2.08e-08!23;CL:0000337!2.08e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,4.54e-14,39;CL:0000211,4.54e-14,39;CL:0000540,6.14e-12,33;CL:0000047,6.14e-12,33;CL:0000031,6.14e-12,33;CL:0000404,6.14e-12,33;CL:0000221,7.84e-10,44;CL:0000133,7.84e-10,44;CL:0002319,1.65e-09,43;CL:0000117,2.08e-08,23;CL:0000337,2.08e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.86e-26!73;UBERON:0005743!5.86e-26!73;UBERON:0000073!2.48e-25!75;UBERON:0001016!2.48e-25!75;UBERON:0004121!8.57e-21!102;UBERON:0000924!8.57e-21!102;UBERON:0006601!8.57e-21!102;UBERON:0000955!1.52e-19!50;UBERON:0006238!1.52e-19!50;UBERON:0001049!1.57e-19!52;UBERON:0005068!1.57e-19!52;UBERON:0006241!1.57e-19!52;UBERON:0007135!1.57e-19!52;UBERON:0002616!6.05e-19!49;UBERON:0002346!9.91e-19!71;UBERON:0003075!9.91e-19!71;UBERON:0007284!9.91e-19!71;UBERON:0000033!2.09e-18!63;UBERON:0003080!2.37e-15!40;UBERON:0002780!1.14e-14!39;UBERON:0001890!1.14e-14!39;UBERON:0006240!1.14e-14!39;UBERON:0003056!3.07e-14!49;UBERON:0002020!3.94e-13!34;UBERON:0007811!1.59e-12!86;UBERON:0000153!2.24e-12!94;UBERON:0002791!2.28e-11!29;UBERON:0003528!2.28e-11!29;UBERON:0001893!2.28e-11!29;UBERON:0004111!1.84e-08!122;UBERON:0000025!1.21e-07!114;UBERON:0000956!2.06e-07!21;UBERON:0001869!2.06e-07!21;UBERON:0000203!2.06e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.86e-26,73;UBERON:0001016,2.48e-25,75;UBERON:0004121,4.07e-21,95;UBERON:0000924,4.07e-21,95;UBERON:0006601,4.07e-21,95;UBERON:0000073,6.55e-21,54;UBERON:0001049,1.57e-19,52;UBERON:0005068,1.57e-19,52;UBERON:0006241,1.57e-19,52;UBERON:0007135,1.57e-19,52;UBERON:0002346,1.61e-19,64;UBERON:0003075,1.61e-19,64;UBERON:0007284,1.61e-19,64;UBERON:0000955,1.58e-17,47;UBERON:0006238,1.58e-17,47;UBERON:0010371,2.02e-17,73;UBERON:0002616,6.07e-17,46;UBERON:0003080,2.37e-15,40;UBERON:0002780,1.14e-14,39;UBERON:0001890,1.14e-14,39;UBERON:0006240,1.14e-14,39;UBERON:0003056,3.07e-14,49;UBERON:0010314,1.89e-13,92;UBERON:0002020,3.94e-13,34;UBERON:0003528,2.28e-11,29;UBERON:0002791,2.28e-11,29;UBERON:0001893,2.28e-11,29;UBERON:0004111,1.84e-08,122;UBERON:0000025,1.21e-07,114;UBERON:0000956,2.06e-07,21;UBERON:0001869,2.06e-07,21;UBERON:0000203,2.06e-07,21 | |||
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| |||
|short_description=p1@Tspyl2 | |||
}} |
Revision as of 19:30, 14 September 2013
Short description: | p1@Tspyl2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tspyl2_5end |
Coexpression cluster: | MCL_coexpression_mm9:2616 |
Association with transcript: | -8bp_to_ENSMUST00000044509, ENSMUST00000138918, ENSMUST00000149685_5end |
EntrezGene: | Tspyl2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 4.54e-14 | 39 |
electrically active cell | 4.54e-14 | 39 |
neuron | 6.14e-12 | 33 |
neuronal stem cell | 6.14e-12 | 33 |
neuroblast | 6.14e-12 | 33 |
electrically signaling cell | 6.14e-12 | 33 |
ectodermal cell | 7.84e-10 | 44 |
neurectodermal cell | 7.84e-10 | 44 |
neural cell | 1.65e-09 | 43 |
CNS neuron (sensu Vertebrata) | 2.08e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.08e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.86e-26 | 73 |
nervous system | 2.48e-25 | 75 |
ectoderm-derived structure | 4.07e-21 | 95 |
ectoderm | 4.07e-21 | 95 |
presumptive ectoderm | 4.07e-21 | 95 |
regional part of nervous system | 6.55e-21 | 54 |
neural tube | 1.57e-19 | 52 |
neural rod | 1.57e-19 | 52 |
future spinal cord | 1.57e-19 | 52 |
neural keel | 1.57e-19 | 52 |
neurectoderm | 1.61e-19 | 64 |
neural plate | 1.61e-19 | 64 |
presumptive neural plate | 1.61e-19 | 64 |
brain | 1.58e-17 | 47 |
future brain | 1.58e-17 | 47 |
ecto-epithelium | 2.02e-17 | 73 |
regional part of brain | 6.07e-17 | 46 |
anterior neural tube | 2.37e-15 | 40 |
regional part of forebrain | 1.14e-14 | 39 |
forebrain | 1.14e-14 | 39 |
future forebrain | 1.14e-14 | 39 |
pre-chordal neural plate | 3.07e-14 | 49 |
structure with developmental contribution from neural crest | 1.89e-13 | 92 |
gray matter | 3.94e-13 | 34 |
brain grey matter | 2.28e-11 | 29 |
regional part of telencephalon | 2.28e-11 | 29 |
telencephalon | 2.28e-11 | 29 |
anatomical conduit | 1.84e-08 | 122 |
tube | 1.21e-07 | 114 |
cerebral cortex | 2.06e-07 | 21 |
cerebral hemisphere | 2.06e-07 | 21 |
pallium | 2.06e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.