FFCP PHASE1:Mm9::chr9:9238950..9238964,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=71544|HGNC=|MCL_coexpression_id=3730|UniProt=B2RQE8|association_with_transcript=48bp_to_ENSMUST00000093893,NM_027823,uc009odp.2,uc012gnz.1_5end|description=CAGE_peak_5_at_Arhgap42_5end|id=chr9:9238950..9238964,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005157!1.90e-08!27|ontology_enrichment_uberon_v019_2=UBERON:0005157,4.52e-09,20;UBERON:0000010,3.35e-07,11;UBERON:0009569,4.68e-07,66;UBERON:0002365,5.08e-07,25;UBERON:0002330,5.08e-07,25;UBERON:0005153,5.26e-07,17|phase1_expression=0.640595388419176,2.79180326111489,1.81999695755814,4.23449895829562,4.50806156951712,1.00727563147134,1.16806320297763,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,0.510259740906419,0,0,0.799962113967033,0.45881856213434,4.59385571292016,1.7230479846363,1.29282739611533,0.950117097281869,1.76421090831952,0.443461021310609,0,0,0,0.288851619751275,0.664938581433969,0.612508068787107,0,0,0,0,0,0,0.377690453926732,0.811015449756117,1.65192076945513,0.782391344348039,0.218025156380447,0.219686182734472,0.388859798148567,0,0,0,0,0,1.28629718017973,2.57880095944881,1.03134418455488,0.202316460859598,0,0.633831403506179,0,0,0,0,0,0,0.768436610643109,0.207379224616955,0.135005938331691,0.210324961351382,0.571301968807607,0,0,0.287536413054709,0,1.10115880999389,0.638436690425939,0.614426133024974,0.263772575460388,0.365950574409639,0,0.279182999001381,0.56276261003168,0.916789486660861,0.589257170947335,0.854230084794618,0.372798891650601,1.81742863999642,2.11600368298999,0.579728977403356,5.16254326188832,0.679971333707751,4.31762553310254,3.89865850468601,4.92829575807069,1.54488862144927,0.852151612890289,0.779358013808606,0.35333957451034,0.845060518660083,1.28326477414318,12.7402619853323,0,0,0.506719730950197,0,1.82694207550496,1.55362730188303,1.03909497345377,0.693941307064543,1.82679286987285,2.07553947530453,1.50722640552623,1.17588707135705,1.0053327306374,1.73036477414062,1.3013942122792,0.884610551949874,1.45590164952668,0.220841518460394,0,0,0.292780797011547,0.209446706813455,2.04365644166873,0.11981512450592,0,0.127070227073065,1.19832511523858,0,0.502617408451458,0.521472960576829,0.511430914660661,0.41557608911912,1.46017136760982,0.101839363850316,1.24406970610093,1.0108910337347,0,0.130120442962704,1.14951052216736,0.540186389416048,0.452114453507145,0.816437989815934,0.512454881139399,0.655912071918102,0.258703370739016,0.646703978798527,0.378212160335639,0.175951124163949,0,0,0.696504333044333,0.61734640922383,0.398068533636986,0,0,0,0,0.703578179943289,0.540186184383045,0,0.590292695242212,0.462801338662135,0.697601834251224,1.07309360559848,1.05088808130453,0.822799249567402,1.14917224855367,1.37816976227955,1.02339991197733,0.878200461164203,1.34206418760372,0.630869845692382,0,2.31293148088659,1.58670339998127,0,0.232236671860439,0.38660238396628,0.605050573870028,0.667134131534611,1.33157938278791,0.949058123089023,1.15289268306808,1.00534083520108,1.1937388322469,0.974820435595601,0.898819408654221,1.94524244887225,2.38969527905241,0.569003702859245,0.913988100877831,0,0.610953983535943,0.775809948670503,1.05203729835478,0.885311519739602,0,1.09899109488962,1.60416313098341,2.66807364378434,0,0.393117990226406,0.674586337154561,0,0.482354319504834,1.2731292589071,2.30156909960649,0.324270453550071,1.09824565275233,1.43768206527355,2.97712758134803,2.80833905803104,3.28352541331245,2.69096120282868,3.85954817090694,2.77129785249907,0.189491411770485,0.488894929326078,0.678980343100753,1.40814148973101,2.1775813467436,1.90434912708811,2.73187107000918,5.67486518782288,5.53661724121937,4.30527875375215,3.27726629431476,1.20879487306127,2.60368305446721,0,0,2.45882136509518,1.93155722413313,0.160550589987792,0.468846746368813,0.327869890753351,1.26235463602186,4.41711507182759,4.68526493155966,1.50796378412959,1.43381278771531,2.00518806674155,0.849229592366497,4.45291771842384,2.33804686329049,2.37172666767914,0,0.283880170416537,0,0.488660878060728,1.97964147567043,0,0.242780636154981,0,0,0.295301892880773,0.614870295887855,0.516856586336442,0.363533729477506,0,0,0,0,0.340439605753788,0.900305470156551,0.517434735131018,1.07168517515796,0,0.535106452806212,0.822745103010605,0.608929898229199,1.64270195644597,2.75381692122966,0,2.4732937941222,1.77610869365496,1.26657142349127,0.716234064018819,1.31312719796049,1.45740418314925,1.48340241608408,0,0.412773735926445,0.740778109478847,0.565105371014073,0.27338845544205,0,0.339956859987711,0,0.138199973804424,0,0.316335993581135,0.609958401380546,0.86404272657441,1.04544148007234,0.655087691238533,1.07891477107857,0.909188012978695,0.785267825952089,0.777689839750757,1.86401793926078,0,0.598066184175915,0.330916980914195,0.388902376688095,0,0.168956125490778,0.117357238645754,0,0.419437377702843,0,0,0,0.202725215290164,0.616265742988964,0.389762468933385,0,0.39736270956253,0.240390899039938,0.295379054349154,0.100966449948148,0.228620419965,0.201652370273681,0,0.288635524920988,0.233753804363138,1.36038230169127,0,0.0897138566094757,0.503653849092235,1.15913756419314,0.93841237725591,1.46521299413812,0.428736758158132,1.00314420807073,1.12950368523413,0,0.572895513439397,0.171853182343688,0,1.5107877947794,0,0.900642406448441,1.35942722695261,0,0.207574695168353,1.19707462020309,0.512200817262403,0.486213434136588,0.419226325255965,0.551530525350042,0.666740183404846,0,0.64183841918363,1.01078884705519,1.52087579934144,1.13175804831646,0.842773567228942,1.02440243847791,0.861532034334199,0,1.62238056322798,0.38581844092741,0.824171801606613,0.147198920134397,1.37147700954166,1.24233064311536,0.953744759789284,1.74415699958794,1.03520318456864,1.4384483341585,0.73171189149109,1.05227884575137,1.08643291076689,1.12228454331548,1.54225523561426,0.591026894253381,2.45538625901814,1.08455788830176,1.15743966588685,0.249810577937946,0.233931608445408,0.429742108096597,1.14772999241306,0.661774257358546,0.695603506861264|short_description=p5@Arhgap42}} | ||
|EntrezGene=71544 | |||
|HGNC= | |||
|MCL_coexpression_id=3730 | |||
|UniProt=B2RQE8 | |||
|association_with_transcript=48bp_to_ENSMUST00000093893,NM_027823,uc009odp.2,uc012gnz.1_5end | |||
|description=CAGE_peak_5_at_Arhgap42_5end | |||
|id=chr9:9238950..9238964,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005157!1.90e-08!27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005157,4.52e-09,20;UBERON:0000010,3.35e-07,11;UBERON:0009569,4.68e-07,66;UBERON:0002365,5.08e-07,25;UBERON:0002330,5.08e-07,25;UBERON:0005153,5.26e-07,17 | |||
|phase1_expression=0.640595388419176,2.79180326111489,1.81999695755814,4.23449895829562,4.50806156951712,1.00727563147134,1.16806320297763,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,0.510259740906419,0,0,0.799962113967033,0.45881856213434,4.59385571292016,1.7230479846363,1.29282739611533,0.950117097281869,1.76421090831952,0.443461021310609,0,0,0,0.288851619751275,0.664938581433969,0.612508068787107,0,0,0,0,0,0,0.377690453926732,0.811015449756117,1.65192076945513,0.782391344348039,0.218025156380447,0.219686182734472,0.388859798148567,0,0,0,0,0,1.28629718017973,2.57880095944881,1.03134418455488,0.202316460859598,0,0.633831403506179,0,0,0,0,0,0,0.768436610643109,0.207379224616955,0.135005938331691,0.210324961351382,0.571301968807607,0,0,0.287536413054709,0,1.10115880999389,0.638436690425939,0.614426133024974,0.263772575460388,0.365950574409639,0,0.279182999001381,0.56276261003168,0.916789486660861,0.589257170947335,0.854230084794618,0.372798891650601,1.81742863999642,2.11600368298999,0.579728977403356,5.16254326188832,0.679971333707751,4.31762553310254,3.89865850468601,4.92829575807069,1.54488862144927,0.852151612890289,0.779358013808606,0.35333957451034,0.845060518660083,1.28326477414318,12.7402619853323,0,0,0.506719730950197,0,1.82694207550496,1.55362730188303,1.03909497345377,0.693941307064543,1.82679286987285,2.07553947530453,1.50722640552623,1.17588707135705,1.0053327306374,1.73036477414062,1.3013942122792,0.884610551949874,1.45590164952668,0.220841518460394,0,0,0.292780797011547,0.209446706813455,2.04365644166873,0.11981512450592,0,0.127070227073065,1.19832511523858,0,0.502617408451458,0.521472960576829,0.511430914660661,0.41557608911912,1.46017136760982,0.101839363850316,1.24406970610093,1.0108910337347,0,0.130120442962704,1.14951052216736,0.540186389416048,0.452114453507145,0.816437989815934,0.512454881139399,0.655912071918102,0.258703370739016,0.646703978798527,0.378212160335639,0.175951124163949,0,0,0.696504333044333,0.61734640922383,0.398068533636986,0,0,0,0,0.703578179943289,0.540186184383045,0,0.590292695242212,0.462801338662135,0.697601834251224,1.07309360559848,1.05088808130453,0.822799249567402,1.14917224855367,1.37816976227955,1.02339991197733,0.878200461164203,1.34206418760372,0.630869845692382,0,2.31293148088659,1.58670339998127,0,0.232236671860439,0.38660238396628,0.605050573870028,0.667134131534611,1.33157938278791,0.949058123089023,1.15289268306808,1.00534083520108,1.1937388322469,0.974820435595601,0.898819408654221,1.94524244887225,2.38969527905241,0.569003702859245,0.913988100877831,0,0.610953983535943,0.775809948670503,1.05203729835478,0.885311519739602,0,1.09899109488962,1.60416313098341,2.66807364378434,0,0.393117990226406,0.674586337154561,0,0.482354319504834,1.2731292589071,2.30156909960649,0.324270453550071,1.09824565275233,1.43768206527355,2.97712758134803,2.80833905803104,3.28352541331245,2.69096120282868,3.85954817090694,2.77129785249907,0.189491411770485,0.488894929326078,0.678980343100753,1.40814148973101,2.1775813467436,1.90434912708811,2.73187107000918,5.67486518782288,5.53661724121937,4.30527875375215,3.27726629431476,1.20879487306127,2.60368305446721,0,0,2.45882136509518,1.93155722413313,0.160550589987792,0.468846746368813,0.327869890753351,1.26235463602186,4.41711507182759,4.68526493155966,1.50796378412959,1.43381278771531,2.00518806674155,0.849229592366497,4.45291771842384,2.33804686329049,2.37172666767914,0,0.283880170416537,0,0.488660878060728,1.97964147567043,0,0.242780636154981,0,0,0.295301892880773,0.614870295887855,0.516856586336442,0.363533729477506,0,0,0,0,0.340439605753788,0.900305470156551,0.517434735131018,1.07168517515796,0,0.535106452806212,0.822745103010605,0.608929898229199,1.64270195644597,2.75381692122966,0,2.4732937941222,1.77610869365496,1.26657142349127,0.716234064018819,1.31312719796049,1.45740418314925,1.48340241608408,0,0.412773735926445,0.740778109478847,0.565105371014073,0.27338845544205,0,0.339956859987711,0,0.138199973804424,0,0.316335993581135,0.609958401380546,0.86404272657441,1.04544148007234,0.655087691238533,1.07891477107857,0.909188012978695,0.785267825952089,0.777689839750757,1.86401793926078,0,0.598066184175915,0.330916980914195,0.388902376688095,0,0.168956125490778,0.117357238645754,0,0.419437377702843,0,0,0,0.202725215290164,0.616265742988964,0.389762468933385,0,0.39736270956253,0.240390899039938,0.295379054349154,0.100966449948148,0.228620419965,0.201652370273681,0,0.288635524920988,0.233753804363138,1.36038230169127,0,0.0897138566094757,0.503653849092235,1.15913756419314,0.93841237725591,1.46521299413812,0.428736758158132,1.00314420807073,1.12950368523413,0,0.572895513439397,0.171853182343688,0,1.5107877947794,0,0.900642406448441,1.35942722695261,0,0.207574695168353,1.19707462020309,0.512200817262403,0.486213434136588,0.419226325255965,0.551530525350042,0.666740183404846,0,0.64183841918363,1.01078884705519,1.52087579934144,1.13175804831646,0.842773567228942,1.02440243847791,0.861532034334199,0,1.62238056322798,0.38581844092741,0.824171801606613,0.147198920134397,1.37147700954166,1.24233064311536,0.953744759789284,1.74415699958794,1.03520318456864,1.4384483341585,0.73171189149109,1.05227884575137,1.08643291076689,1.12228454331548,1.54225523561426,0.591026894253381,2.45538625901814,1.08455788830176,1.15743966588685,0.249810577937946,0.233931608445408,0.429742108096597,1.14772999241306,0.661774257358546,0.695603506861264 | |||
|short_description=p5@Arhgap42 | |||
}} | |||
Revision as of 18:59, 14 September 2013
| Short description: | p5@Arhgap42 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_5_at_Arhgap42_5end |
| Coexpression cluster: | MCL_coexpression_mm9:3730 |
| Association with transcript: | 48bp_to_ENSMUST00000093893, NM_027823, uc009odp.2, uc012gnz.1_5end |
| EntrezGene: | Arhgap42 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial fold | 4.52e-09 | 20 |
| peripheral nervous system | 3.35e-07 | 11 |
| subdivision of trunk | 4.68e-07 | 66 |
| exocrine gland | 5.08e-07 | 25 |
| exocrine system | 5.08e-07 | 25 |
| epithelial bud | 5.26e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
