FFCP PHASE1:Mm9::chr9:65756586..65756605,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=56404|HGNC=|MCL_coexpression_id=60|UniProt=D3Z3P3,Q9QXN3|association_with_transcript=0bp_to_ENSMUST00000126517,ENSMUST00000134338,ENSMUST00000139346,ENSMUST00000143864,NM_019797,uc009qec.2,uc009qed.2,uc012gvn.1_5end|description=CAGE_peak_2_at_Trip4_5end|id=chr9:65756586..65756605,-|ontology_enrichment_celltype=CL:0000221!1.42e-08!44;CL:0000133!1.42e-08!44;CL:0002319!4.11e-08!43;CL:0000055!1.09e-07!50;CL:0000117!1.65e-07!23;CL:0000337!1.65e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,2.91e-08,23;CL:0000337,2.91e-08,23;CL:0000221,3.96e-07,44;CL:0000133,3.96e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!5.02e-17!75;UBERON:0001016!5.02e-17!75;UBERON:0001017!1.11e-16!73;UBERON:0005743!1.11e-16!73;UBERON:0004121!1.59e-16!102;UBERON:0000924!1.59e-16!102;UBERON:0006601!1.59e-16!102;UBERON:0000033!7.35e-16!63;UBERON:0002346!1.82e-14!71;UBERON:0003075!1.82e-14!71;UBERON:0007284!1.82e-14!71;UBERON:0000955!8.13e-14!50;UBERON:0006238!8.13e-14!50;UBERON:0002616!2.43e-13!49;UBERON:0001049!4.98e-13!52;UBERON:0005068!4.98e-13!52;UBERON:0006241!4.98e-13!52;UBERON:0007135!4.98e-13!52;UBERON:0000153!5.24e-13!94;UBERON:0007811!3.06e-12!86;UBERON:0003056!4.28e-12!49;UBERON:0003080!2.64e-10!40;UBERON:0002780!6.05e-10!39;UBERON:0001890!6.05e-10!39;UBERON:0006240!6.05e-10!39;UBERON:0002020!1.50e-08!34;UBERON:0002791!1.70e-07!29;UBERON:0003528!1.70e-07!29;UBERON:0001893!1.70e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.27e-18,54;UBERON:0001017,5.26e-18,73;UBERON:0001016,3.75e-17,75;UBERON:0000955,6.73e-17,47;UBERON:0006238,6.73e-17,47;UBERON:0002616,3.94e-16,46;UBERON:0001049,2.07e-15,52;UBERON:0005068,2.07e-15,52;UBERON:0006241,2.07e-15,52;UBERON:0007135,2.07e-15,52;UBERON:0004121,7.23e-15,95;UBERON:0000924,7.23e-15,95;UBERON:0006601,7.23e-15,95;UBERON:0002346,3.32e-14,64;UBERON:0003075,3.32e-14,64;UBERON:0007284,3.32e-14,64;UBERON:0003080,4.89e-13,40;UBERON:0003056,6.03e-13,49;UBERON:0002780,1.90e-12,39;UBERON:0001890,1.90e-12,39;UBERON:0006240,1.90e-12,39;UBERON:0010371,4.88e-12,73;UBERON:0003528,3.83e-10,29;UBERON:0002791,3.83e-10,29;UBERON:0001893,3.83e-10,29;UBERON:0002020,6.45e-10,34;UBERON:0010314,1.46e-08,92;UBERON:0002420,6.00e-07,8;UBERON:0007245,6.00e-07,8;UBERON:0010009,6.00e-07,8;UBERON:0010011,6.00e-07,8;UBERON:0000454,6.00e-07,8|phase1_expression=0.480446541314382,0.348975407639361,0,0.60492842261366,0,0.33575854382378,0.233612640595526,0.387369970324729,0,0,0,0.319088635981346,0.513602189793617,0.437102012094987,0,0,0,0.315462165358238,0.274228867211478,0,4.67738095830884,0.695036658406197,1.56719873483361,0.319984845586813,0.45881856213434,0,0,0.215471232685889,0.570070258369122,0.504060259519861,0.443461021310609,0,0.61506478758457,0,0.288851619751275,0.166234645358492,0.408338712524738,0.418531630736908,0,1.0470474879476,1.17646297606203,0,2.42755176515577,0.503587271902309,1.01376931219515,0.183546752161682,0,1.96222640742402,0.878744730937887,1.74986909166855,0.979904951377538,1.43752564364972,0,0.725362142011344,0.336093799142464,0.257259436035947,0.573066879877513,1.54701627683233,0.809265843438391,1.5869729378161,1.90149421051854,0,0.889294796111139,0,0,0,1.49800055259202,2.68952813725088,1.03689612308478,0.405017814995072,0.630974884054146,1.14260393761521,0.662605622854841,0.979926393719632,2.30029130443767,0,2.20231761998777,2.29837208553338,2.61131106535614,1.71452174049252,2.56165402086747,1.56274011167028,3.62937898701795,3.93933827022176,2.75036845998258,0.883885756421003,2.70506193518296,0.931997229126503,0.832988126665025,0.906858721281426,0.289864488701678,0.860423876981386,0,0.539703191637817,0,0,0.280888840263504,0.681721290312231,0.779358013808606,0,2.11265129665021,1.28326477414318,2.54805239706646,0,0.649473123033642,0.253359865475099,0.505524445014783,0.79928715803342,1.03575153458869,1.33597925158342,0.520455980298408,0,0.691846491768175,0.753613202763113,0.823120949949934,0.879666139307728,0.247194967734374,0.289198713839823,0,0.808834249737046,0.441683036920787,0.969750506270444,0,1.75668478206928,1.04723353406728,0,0.239630249011841,0,0,1.3481157546434,0,1.38219787324151,1.21677024134594,2.04572365864264,1.66230435647648,1.78465389374533,0.611036183101898,0.746441823660558,0.505445516867349,1.26265113531884,0.520481771850815,0.919608417733892,0.720248519221397,0.90422890701429,1.15662048557257,0.896796041993948,2.06143794031403,1.29351685369508,0.646703978798527,0.756424320671277,1.40760899331159,0.43839146485515,0.278047249225598,1.0447564995665,1.02891068203972,0.398068533636986,0,0,0,0.414251545071004,0,0,0,0.590292695242212,0.308534225774757,0.465067889500816,0.536546802799238,0.467061369468678,0.16455984991348,0.32833492815819,0.162137619091711,0,0.439100230582101,0.134206418760372,1.68231958851302,1.54356918568927,0,0.264450566663544,0.213288250535234,1.16118335930219,0.257734922644187,0.403367049246685,0.889512175379481,0.570676878337677,0,0.164698954724011,0,0.19895647204115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| ||
|EntrezGene=56404 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=D3Z3P3,Q9QXN3 | |||
|association_with_transcript=0bp_to_ENSMUST00000126517,ENSMUST00000134338,ENSMUST00000139346,ENSMUST00000143864,NM_019797,uc009qec.2,uc009qed.2,uc012gvn.1_5end | |||
|description=CAGE_peak_2_at_Trip4_5end | |||
|id=chr9:65756586..65756605,- | |||
|ontology_enrichment_celltype=CL:0000221!1.42e-08!44;CL:0000133!1.42e-08!44;CL:0002319!4.11e-08!43;CL:0000055!1.09e-07!50;CL:0000117!1.65e-07!23;CL:0000337!1.65e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.91e-08,23;CL:0000337,2.91e-08,23;CL:0000221,3.96e-07,44;CL:0000133,3.96e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.02e-17!75;UBERON:0001016!5.02e-17!75;UBERON:0001017!1.11e-16!73;UBERON:0005743!1.11e-16!73;UBERON:0004121!1.59e-16!102;UBERON:0000924!1.59e-16!102;UBERON:0006601!1.59e-16!102;UBERON:0000033!7.35e-16!63;UBERON:0002346!1.82e-14!71;UBERON:0003075!1.82e-14!71;UBERON:0007284!1.82e-14!71;UBERON:0000955!8.13e-14!50;UBERON:0006238!8.13e-14!50;UBERON:0002616!2.43e-13!49;UBERON:0001049!4.98e-13!52;UBERON:0005068!4.98e-13!52;UBERON:0006241!4.98e-13!52;UBERON:0007135!4.98e-13!52;UBERON:0000153!5.24e-13!94;UBERON:0007811!3.06e-12!86;UBERON:0003056!4.28e-12!49;UBERON:0003080!2.64e-10!40;UBERON:0002780!6.05e-10!39;UBERON:0001890!6.05e-10!39;UBERON:0006240!6.05e-10!39;UBERON:0002020!1.50e-08!34;UBERON:0002791!1.70e-07!29;UBERON:0003528!1.70e-07!29;UBERON:0001893!1.70e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.27e-18,54;UBERON:0001017,5.26e-18,73;UBERON:0001016,3.75e-17,75;UBERON:0000955,6.73e-17,47;UBERON:0006238,6.73e-17,47;UBERON:0002616,3.94e-16,46;UBERON:0001049,2.07e-15,52;UBERON:0005068,2.07e-15,52;UBERON:0006241,2.07e-15,52;UBERON:0007135,2.07e-15,52;UBERON:0004121,7.23e-15,95;UBERON:0000924,7.23e-15,95;UBERON:0006601,7.23e-15,95;UBERON:0002346,3.32e-14,64;UBERON:0003075,3.32e-14,64;UBERON:0007284,3.32e-14,64;UBERON:0003080,4.89e-13,40;UBERON:0003056,6.03e-13,49;UBERON:0002780,1.90e-12,39;UBERON:0001890,1.90e-12,39;UBERON:0006240,1.90e-12,39;UBERON:0010371,4.88e-12,73;UBERON:0003528,3.83e-10,29;UBERON:0002791,3.83e-10,29;UBERON:0001893,3.83e-10,29;UBERON:0002020,6.45e-10,34;UBERON:0010314,1.46e-08,92;UBERON:0002420,6.00e-07,8;UBERON:0007245,6.00e-07,8;UBERON:0010009,6.00e-07,8;UBERON:0010011,6.00e-07,8;UBERON:0000454,6.00e-07,8 | |||
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| |||
|short_description=p2@Trip4 | |||
}} |
Revision as of 18:33, 14 September 2013
Short description: | p2@Trip4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Trip4_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000126517, ENSMUST00000134338, ENSMUST00000139346, ENSMUST00000143864, NM_019797, uc009qec.2, uc009qed.2, uc012gvn.1_5end |
EntrezGene: | Trip4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.91e-08 | 23 |
neuroblast (sensu Vertebrata) | 2.91e-08 | 23 |
ectodermal cell | 3.96e-07 | 44 |
neurectodermal cell | 3.96e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.27e-18 | 54 |
central nervous system | 5.26e-18 | 73 |
nervous system | 3.75e-17 | 75 |
brain | 6.73e-17 | 47 |
future brain | 6.73e-17 | 47 |
regional part of brain | 3.94e-16 | 46 |
neural tube | 2.07e-15 | 52 |
neural rod | 2.07e-15 | 52 |
future spinal cord | 2.07e-15 | 52 |
neural keel | 2.07e-15 | 52 |
ectoderm-derived structure | 7.23e-15 | 95 |
ectoderm | 7.23e-15 | 95 |
presumptive ectoderm | 7.23e-15 | 95 |
neurectoderm | 3.32e-14 | 64 |
neural plate | 3.32e-14 | 64 |
presumptive neural plate | 3.32e-14 | 64 |
anterior neural tube | 4.89e-13 | 40 |
pre-chordal neural plate | 6.03e-13 | 49 |
regional part of forebrain | 1.90e-12 | 39 |
forebrain | 1.90e-12 | 39 |
future forebrain | 1.90e-12 | 39 |
ecto-epithelium | 4.88e-12 | 73 |
brain grey matter | 3.83e-10 | 29 |
regional part of telencephalon | 3.83e-10 | 29 |
telencephalon | 3.83e-10 | 29 |
gray matter | 6.45e-10 | 34 |
structure with developmental contribution from neural crest | 1.46e-08 | 92 |
basal ganglion | 6.00e-07 | 8 |
nuclear complex of neuraxis | 6.00e-07 | 8 |
aggregate regional part of brain | 6.00e-07 | 8 |
collection of basal ganglia | 6.00e-07 | 8 |
cerebral subcortex | 6.00e-07 | 8 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.