FFCP PHASE1:Mm9::chr9:42913905..42913957,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=69632|HGNC=|UniProt=F8VQN6,Q8R4H2,Q9D7D6|association_with_transcript=-104bp_to_ENSMUST00000165665,NM_027144,uc009pba.1,uc009pbb.1,uc009pbc.1_5end|description=CAGE_peak_3_at_Arhgef12_5end|id=chr9:42913905..42913957,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0009569!2.58e-13!66;UBERON:0005177!4.63e-12!85;UBERON:0002100!1.21e-10!98;UBERON:0005172!4.25e-10!49;UBERON:0005173!4.25e-10!49;UBERON:0002417!4.25e-10!49;UBERON:0000916!4.25e-10!49;UBERON:0003914!6.66e-10!47;UBERON:0009854!2.74e-09!23;UBERON:0009856!2.74e-09!23;UBERON:0002107!7.06e-09!22;UBERON:0007499!7.06e-09!22;UBERON:0006925!7.06e-09!22;UBERON:0009497!7.06e-09!22;UBERON:0000015!7.06e-09!22;UBERON:0002423!7.06e-09!22;UBERON:0006235!7.06e-09!22;UBERON:0008835!7.06e-09!22;UBERON:0003894!7.06e-09!22;UBERON:0004161!7.06e-09!22;UBERON:0008836!7.06e-09!22;UBERON:0000466!4.36e-08!79;UBERON:0002365!8.54e-08!25;UBERON:0002330!8.54e-08!25;UBERON:0004111!8.50e-07!122|ontology_enrichment_uberon_v019_2=UBERON:0005177,8.94e-14,79;UBERON:0009569,2.47e-13,66;UBERON:0002100,2.35e-12,90;UBERON:0005172,4.10e-10,49;UBERON:0005173,4.10e-10,49;UBERON:0002417,4.10e-10,49;UBERON:0000916,4.10e-10,49;UBERON:0003914,6.59e-10,47;UBERON:0009854,2.71e-09,23;UBERON:0009856,2.71e-09,23;UBERON:0002107,6.99e-09,22;UBERON:0007499,6.99e-09,22;UBERON:0006925,6.99e-09,22;UBERON:0009497,6.99e-09,22;UBERON:0000015,6.99e-09,22;UBERON:0002423,6.99e-09,22;UBERON:0006235,6.99e-09,22;UBERON:0008835,6.99e-09,22;UBERON:0003894,6.99e-09,22;UBERON:0004161,6.99e-09,22;UBERON:0008836,6.99e-09,22;UBERON:0002365,8.46e-08,25;UBERON:0002330,8.46e-08,25;UBERON:0003104,1.05e-07,61;UBERON:0009142,1.05e-07,61;UBERON:0005256,6.51e-07,45;UBERON:0004111,8.40e-07,122|phase1_expression=3.52327463630547,4.88565570695105,6.3699893514535,9.67885476181856,9.5170188689806,7.72244650794693,5.13947809310157,3.09895976259783,0.985521055061667,0.936258105287974,0.171217968225505,0.638177271962691,0.856003649656029,0.786783621770977,15.9892685671518,22.2722794128809,14.6907994406911,1.73504190947031,2.33094537129756,2.97072756258621,11.2257142999412,0.297872853602656,0.261199789138935,3.19984845586813,2.52350209173887,4.59385571292016,7.75371593086335,4.30942465371778,3.99049180858385,6.80481350351813,1.77384408524244,5.08024538767705,7.99584223859941,0,8.66554859253824,6.64938581433969,7.9626048942324,0.837063261473815,0.7813353445238,1.0470474879476,0,0,0,2.7697299954627,3.85232338634155,3.48738829107195,2.34717403304412,3.92445281484804,6.59058548203415,7.97162586204562,4.05960622713551,1.43752564364972,1.34226084846189,0,1.34437519656986,5.65970759279083,12.0344044774278,9.7977697532714,1.61853168687678,1.05798195854407,0.633831403506179,2.37191172448392,4.4464739805557,0.899899717281399,1.97773272513395,2.1314403448383,4.19440154725767,6.91592949578798,2.38486108309499,1.08004750665353,1.47227472945967,3.99911378165325,3.3130281142742,1.71487118900936,1.53352753629178,1.83843757322004,4.40463523997555,8.04430229936683,7.68032666281217,0.527545150920775,1.28082701043374,1.04182674111352,4.18774498502071,5.6276261003168,9.16789486660861,2.06240009831567,5.55249555116501,1.3047961207771,9.16286939331527,12.9983083383671,34.204009666798,13.7667820317022,11.5595126730318,14.5719861742211,15.5946340187441,12.9927797258227,8.42666520790511,3.74946709671727,3.63700406444016,3.88673531961374,5.21120653173718,6.41632387071589,15.2883143823987,7.11066703153331,5.62876706629157,5.57391704045217,6.0662933401774,11.9893073705013,4.66088190564909,9.35185476108396,3.29622120855658,2.43572382649713,4.61230994512117,4.22023393547343,6.58496759959947,9.29932775839599,9.39340877390621,18.7979163995885,5.30766331169925,4.04417124868523,9.93786833071771,9.21262980956922,11.1835056730873,3.80615036115011,8.79676168616511,4.59822699375465,0.479260498023681,0,0.127070227073065,6.44099749440738,6.40500843946077,1.13088916901578,7.99591872884472,11.2514801225345,7.48036960414416,7.94982189032012,6.72139801412087,9.45492976636707,10.108910337347,7.36546495602659,2.73252930221678,1.83921683546778,1.98068342785884,4.37043971723574,3.19771546011241,2.43416068541215,3.37326208415024,4.65666067330228,1.5089759505299,3.59301552318857,2.28736461413134,4.82230611340665,5.83899223373756,10.0993128291428,8.23128545631774,3.38358253591438,0,0,0,2.69263504296152,2.81431271977315,3.6012412292203,3.55117103377815,8.06733350164356,6.01641740260775,3.72054311600653,8.58474884478781,10.8591768401468,9.05079174524142,11.3275550214576,14.592385718254,12.4269989311532,9.22110484222413,15.5679445762031,8.62188789112922,2.57261530948211,6.93879444265976,6.34681359992506,1.49301775374664,3.25131340604614,3.73715637834071,2.8235693447268,2.2237804384487,3.61428689613862,4.2707615539006,3.45867804920423,4.27269854960458,5.17286827306992,5.06906626509712,2.69645822596266,4.97117514711797,6.37252074413975,0.379335801906163,4.2271949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| ||
|EntrezGene=69632 | |||
|HGNC= | |||
|UniProt=F8VQN6,Q8R4H2,Q9D7D6 | |||
|association_with_transcript=-104bp_to_ENSMUST00000165665,NM_027144,uc009pba.1,uc009pbb.1,uc009pbc.1_5end | |||
|description=CAGE_peak_3_at_Arhgef12_5end | |||
|id=chr9:42913905..42913957,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009569!2.58e-13!66;UBERON:0005177!4.63e-12!85;UBERON:0002100!1.21e-10!98;UBERON:0005172!4.25e-10!49;UBERON:0005173!4.25e-10!49;UBERON:0002417!4.25e-10!49;UBERON:0000916!4.25e-10!49;UBERON:0003914!6.66e-10!47;UBERON:0009854!2.74e-09!23;UBERON:0009856!2.74e-09!23;UBERON:0002107!7.06e-09!22;UBERON:0007499!7.06e-09!22;UBERON:0006925!7.06e-09!22;UBERON:0009497!7.06e-09!22;UBERON:0000015!7.06e-09!22;UBERON:0002423!7.06e-09!22;UBERON:0006235!7.06e-09!22;UBERON:0008835!7.06e-09!22;UBERON:0003894!7.06e-09!22;UBERON:0004161!7.06e-09!22;UBERON:0008836!7.06e-09!22;UBERON:0000466!4.36e-08!79;UBERON:0002365!8.54e-08!25;UBERON:0002330!8.54e-08!25;UBERON:0004111!8.50e-07!122 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,8.94e-14,79;UBERON:0009569,2.47e-13,66;UBERON:0002100,2.35e-12,90;UBERON:0005172,4.10e-10,49;UBERON:0005173,4.10e-10,49;UBERON:0002417,4.10e-10,49;UBERON:0000916,4.10e-10,49;UBERON:0003914,6.59e-10,47;UBERON:0009854,2.71e-09,23;UBERON:0009856,2.71e-09,23;UBERON:0002107,6.99e-09,22;UBERON:0007499,6.99e-09,22;UBERON:0006925,6.99e-09,22;UBERON:0009497,6.99e-09,22;UBERON:0000015,6.99e-09,22;UBERON:0002423,6.99e-09,22;UBERON:0006235,6.99e-09,22;UBERON:0008835,6.99e-09,22;UBERON:0003894,6.99e-09,22;UBERON:0004161,6.99e-09,22;UBERON:0008836,6.99e-09,22;UBERON:0002365,8.46e-08,25;UBERON:0002330,8.46e-08,25;UBERON:0003104,1.05e-07,61;UBERON:0009142,1.05e-07,61;UBERON:0005256,6.51e-07,45;UBERON:0004111,8.40e-07,122 | |||
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| |||
|short_description=p3@Arhgef12 | |||
}} |
Revision as of 17:52, 14 September 2013
Short description: | p3@Arhgef12 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Arhgef12_5end |
Coexpression cluster: | NA |
Association with transcript: | -104bp_to_ENSMUST00000165665, NM_027144, uc009pba.1, uc009pbb.1, uc009pbc.1_5end |
EntrezGene: | Arhgef12 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
trunk region element | 8.94e-14 | 79 |
subdivision of trunk | 2.47e-13 | 66 |
trunk | 2.35e-12 | 90 |
abdomen element | 4.10e-10 | 49 |
abdominal segment element | 4.10e-10 | 49 |
abdominal segment of trunk | 4.10e-10 | 49 |
abdomen | 4.10e-10 | 49 |
epithelial tube | 6.59e-10 | 47 |
digestive tract diverticulum | 2.71e-09 | 23 |
sac | 2.71e-09 | 23 |
liver | 6.99e-09 | 22 |
epithelial sac | 6.99e-09 | 22 |
digestive gland | 6.99e-09 | 22 |
epithelium of foregut-midgut junction | 6.99e-09 | 22 |
anatomical boundary | 6.99e-09 | 22 |
hepatobiliary system | 6.99e-09 | 22 |
foregut-midgut junction | 6.99e-09 | 22 |
hepatic diverticulum | 6.99e-09 | 22 |
liver primordium | 6.99e-09 | 22 |
septum transversum | 6.99e-09 | 22 |
liver bud | 6.99e-09 | 22 |
exocrine gland | 8.46e-08 | 25 |
exocrine system | 8.46e-08 | 25 |
mesenchyme | 1.05e-07 | 61 |
entire embryonic mesenchyme | 1.05e-07 | 61 |
trunk mesenchyme | 6.51e-07 | 45 |
anatomical conduit | 8.40e-07 | 122 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.