FFCP PHASE1:Mm9::chr9:40263815..40263826,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=235283|HGNC=|MCL_coexpression_id=55|UniProt=Q80TI0|association_with_transcript=-466bp_to_ENSMUST00000045682,NM_172768,uc009ozq.1_5end|description=CAGE_peak_20_at_Gramd1b_5end|id=chr9:40263815..40263826,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000893,1.84e-07,6;CL:0002489,1.84e-07,6;CL:0000898,1.84e-07,6;CL:0000809,1.84e-07,6;CL:0000810,1.84e-07,6;CL:0000895,1.84e-07,6;CL:0000808,1.84e-07,6;CL:0000894,1.84e-07,6;CL:0000806,1.84e-07,6;CL:0000807,1.84e-07,6;CL:0000805,1.84e-07,6;CL:0002425,1.84e-07,6;CL:0002436,1.84e-07,6;CL:0002427,1.84e-07,6;CL:0002428,1.84e-07,6;CL:0002429,1.84e-07,6;CL:0002433,1.84e-07,6;CL:0002431,1.84e-07,6;CL:0002432,1.84e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003135!9.80e-10!15;UBERON:0003133!2.53e-09!24;UBERON:0000473!3.40e-09!14;UBERON:0003101!7.64e-09!16;UBERON:0000079!7.64e-09!16;UBERON:0000991!8.01e-09!18;UBERON:0005564!8.01e-09!18;UBERON:0002369!8.62e-09!7;UBERON:0006858!8.62e-09!7;UBERON:0004176!2.11e-08!17;UBERON:0009196!2.11e-08!17;UBERON:0009117!2.11e-08!17;UBERON:0005156!3.79e-08!26;UBERON:0000990!3.79e-08!26;UBERON:0003064!1.62e-07!14|ontology_enrichment_uberon_v019_2=UBERON:0002369,5.12e-34,7;UBERON:0006858,5.12e-34,7;UBERON:0003064,1.14e-16,14;UBERON:0004176,2.68e-16,17;UBERON:0009196,2.68e-16,17;UBERON:0009117,2.68e-16,17;UBERON:0000991,2.43e-15,18;UBERON:0005564,2.43e-15,18;UBERON:0000473,2.84e-15,14;UBERON:0003135,3.28e-14,15;UBERON:0003101,2.79e-13,16;UBERON:0000079,2.79e-13,16;UBERON:0000926,1.20e-11,120;UBERON:0004120,1.20e-11,120;UBERON:0006603,1.20e-11,120;UBERON:0003133,2.86e-11,24;UBERON:0005156,2.49e-10,26;UBERON:0000990,2.49e-10,26;UBERON:0002323,5.74e-07,37;UBERON:0004458,5.74e-07,37;UBERON:0003886,9.29e-07,38|phase1_expression=0.160148847104794,0,0,0.90739263392049,0,0,0,0,1.68946466582,1.40438715793196,2.39705155515707,0.159544317990673,0,0.0874204024189974,0,0,0,0,0,0,0.0850432901510698,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.7813353445238,0,0.588231488031014,0,0.485510353031154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299600110518405,0,0.207379224616955,0,0,0,0,0,0.0958454710182364,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,3.41416919849097,1.90833859442749,2.74018930480927,5.99600292865752,6.48107354376277,8.23120949949934,8.41966161908826,0,0,0,0,0.220841518460394,0,0,0.292780797011547,0.209446706813455,0.255457055208591,0,0,0,0,0,0,0.173824320192276,0,0,0,0.305518091550949,0.248813941220186,0.252722758433675,0,0,0,0.180062129805349,0,0.0680364991513279,0,0,0,0,0.189106080167819,0,0,0,0,0,0.199034266818493,0,0,0,0.207125772535502,1.17263029990548,0.720248245844059,0,0.393528463494808,0.462801338662135,0.465067889500816,0,0.233530684734339,0.16455984991348,0,0.324275238183423,0.584799949701329,0,0.134206418760372,0,0.411618449517138,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0.685491075658373,0,0,0.581857461502877,0.210407459670956,0.189709611372772,0.442830443938806,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0.169745085775188,0,0.167506257441816,0,0,0,0.221464689648775,0,0,0,0.144649058581512,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,2.12910127812403,0,0,0,0,0,0,0,0,0,0,0.363533729477506,0.356497378384721,0,0,0,0,0,0,0.428674070063185,0.177340233642274,0,0.329098041204242,0,0.23467170806371,0.21183207086382,0,0,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404593039154462,0.0826534557253359,0.26175594198403,0,0,0,1.34564891439581,0.66183396182839,1.94451188344048,2.32487682259916,1.85851738039856,1.5256441023948,1.43224823328345,1.46803082195995,0.724752362478018,0.288030006257865,0.316011120628178,0,0.102710957164827,0,0,0,0,0.443068581523732,0.201932899896295,0,0.100826185136841,0,0.0962118416403295,0,0.226730383615211,0,0.269141569828427,0.167884616364078,0.19318959403219,0,0.183151624267265,0,0,0,0,0,0.515559547031063,0.685082519770642,0,0,0,0,0,0,0,0,0,0,0,0.44449345560323,0,0,0,0,0.188626341386076,0.0936415074698824,0.256100609619477,0.229741875822453,0,0.231768651889711,0,0,0,0.342869252385415,0.177475806159338,0,0.290692833264657,0.376437521661322,0.169229215783353,0.182927972872773,0,0,0,0,0,0,0,0,0.249810577937946,0,0,0,0.220591419119515,0|short_description=p20@Gramd1b}} | ||
|EntrezGene=235283 | |||
|HGNC= | |||
|MCL_coexpression_id=55 | |||
|UniProt=Q80TI0 | |||
|association_with_transcript=-466bp_to_ENSMUST00000045682,NM_172768,uc009ozq.1_5end | |||
|description=CAGE_peak_20_at_Gramd1b_5end | |||
|id=chr9:40263815..40263826,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000893,1.84e-07,6;CL:0002489,1.84e-07,6;CL:0000898,1.84e-07,6;CL:0000809,1.84e-07,6;CL:0000810,1.84e-07,6;CL:0000895,1.84e-07,6;CL:0000808,1.84e-07,6;CL:0000894,1.84e-07,6;CL:0000806,1.84e-07,6;CL:0000807,1.84e-07,6;CL:0000805,1.84e-07,6;CL:0002425,1.84e-07,6;CL:0002436,1.84e-07,6;CL:0002427,1.84e-07,6;CL:0002428,1.84e-07,6;CL:0002429,1.84e-07,6;CL:0002433,1.84e-07,6;CL:0002431,1.84e-07,6;CL:0002432,1.84e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003135!9.80e-10!15;UBERON:0003133!2.53e-09!24;UBERON:0000473!3.40e-09!14;UBERON:0003101!7.64e-09!16;UBERON:0000079!7.64e-09!16;UBERON:0000991!8.01e-09!18;UBERON:0005564!8.01e-09!18;UBERON:0002369!8.62e-09!7;UBERON:0006858!8.62e-09!7;UBERON:0004176!2.11e-08!17;UBERON:0009196!2.11e-08!17;UBERON:0009117!2.11e-08!17;UBERON:0005156!3.79e-08!26;UBERON:0000990!3.79e-08!26;UBERON:0003064!1.62e-07!14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002369,5.12e-34,7;UBERON:0006858,5.12e-34,7;UBERON:0003064,1.14e-16,14;UBERON:0004176,2.68e-16,17;UBERON:0009196,2.68e-16,17;UBERON:0009117,2.68e-16,17;UBERON:0000991,2.43e-15,18;UBERON:0005564,2.43e-15,18;UBERON:0000473,2.84e-15,14;UBERON:0003135,3.28e-14,15;UBERON:0003101,2.79e-13,16;UBERON:0000079,2.79e-13,16;UBERON:0000926,1.20e-11,120;UBERON:0004120,1.20e-11,120;UBERON:0006603,1.20e-11,120;UBERON:0003133,2.86e-11,24;UBERON:0005156,2.49e-10,26;UBERON:0000990,2.49e-10,26;UBERON:0002323,5.74e-07,37;UBERON:0004458,5.74e-07,37;UBERON:0003886,9.29e-07,38 | |||
|phase1_expression=0.160148847104794,0,0,0.90739263392049,0,0,0,0,1.68946466582,1.40438715793196,2.39705155515707,0.159544317990673,0,0.0874204024189974,0,0,0,0,0,0,0.0850432901510698,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.7813353445238,0,0.588231488031014,0,0.485510353031154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299600110518405,0,0.207379224616955,0,0,0,0,0,0.0958454710182364,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,3.41416919849097,1.90833859442749,2.74018930480927,5.99600292865752,6.48107354376277,8.23120949949934,8.41966161908826,0,0,0,0,0.220841518460394,0,0,0.292780797011547,0.209446706813455,0.255457055208591,0,0,0,0,0,0,0.173824320192276,0,0,0,0.305518091550949,0.248813941220186,0.252722758433675,0,0,0,0.180062129805349,0,0.0680364991513279,0,0,0,0,0.189106080167819,0,0,0,0,0,0.199034266818493,0,0,0,0.207125772535502,1.17263029990548,0.720248245844059,0,0.393528463494808,0.462801338662135,0.465067889500816,0,0.233530684734339,0.16455984991348,0,0.324275238183423,0.584799949701329,0,0.134206418760372,0,0.411618449517138,0,0,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0.685491075658373,0,0,0.581857461502877,0.210407459670956,0.189709611372772,0.442830443938806,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,0,0,0.169745085775188,0,0.167506257441816,0,0,0,0.221464689648775,0,0,0,0.144649058581512,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,2.12910127812403,0,0,0,0,0,0,0,0,0,0,0.363533729477506,0.356497378384721,0,0,0,0,0,0,0.428674070063185,0.177340233642274,0,0.329098041204242,0,0.23467170806371,0.21183207086382,0,0,0,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404593039154462,0.0826534557253359,0.26175594198403,0,0,0,1.34564891439581,0.66183396182839,1.94451188344048,2.32487682259916,1.85851738039856,1.5256441023948,1.43224823328345,1.46803082195995,0.724752362478018,0.288030006257865,0.316011120628178,0,0.102710957164827,0,0,0,0,0.443068581523732,0.201932899896295,0,0.100826185136841,0,0.0962118416403295,0,0.226730383615211,0,0.269141569828427,0.167884616364078,0.19318959403219,0,0.183151624267265,0,0,0,0,0,0.515559547031063,0.685082519770642,0,0,0,0,0,0,0,0,0,0,0,0.44449345560323,0,0,0,0,0.188626341386076,0.0936415074698824,0.256100609619477,0.229741875822453,0,0.231768651889711,0,0,0,0.342869252385415,0.177475806159338,0,0.290692833264657,0.376437521661322,0.169229215783353,0.182927972872773,0,0,0,0,0,0,0,0,0.249810577937946,0,0,0,0.220591419119515,0 | |||
|short_description=p20@Gramd1b | |||
}} |
Revision as of 17:47, 14 September 2013
Short description: | p20@Gramd1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_20_at_Gramd1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:55 |
Association with transcript: | -466bp_to_ENSMUST00000045682, NM_172768, uc009ozq.1_5end |
EntrezGene: | Gramd1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymocyte | 1.84e-07 | 6 |
double negative thymocyte | 1.84e-07 | 6 |
naive T cell | 1.84e-07 | 6 |
double-positive, alpha-beta thymocyte | 1.84e-07 | 6 |
CD4-positive, alpha-beta thymocyte | 1.84e-07 | 6 |
naive thymus-derived CD4-positive, alpha-beta T cell | 1.84e-07 | 6 |
DN4 thymocyte | 1.84e-07 | 6 |
DN1 thymic pro-T cell | 1.84e-07 | 6 |
DN2 thymocyte | 1.84e-07 | 6 |
DN3 thymocyte | 1.84e-07 | 6 |
immature single positive thymocyte | 1.84e-07 | 6 |
early T lineage precursor | 1.84e-07 | 6 |
mature CD4 single-positive thymocyte | 1.84e-07 | 6 |
resting double-positive thymocyte | 1.84e-07 | 6 |
double-positive blast | 1.84e-07 | 6 |
CD69-positive double-positive thymocyte | 1.84e-07 | 6 |
CD69-positive, CD4-positive single-positive thymocyte | 1.84e-07 | 6 |
CD4-positive, CD8-intermediate double-positive thymocyte | 1.84e-07 | 6 |
CD24-positive, CD4 single-positive thymocyte | 1.84e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
adrenal gland | 5.12e-34 | 7 |
adrenal/interrenal gland | 5.12e-34 | 7 |
intermediate mesoderm | 1.14e-16 | 14 |
external genitalia | 2.68e-16 | 17 |
indifferent external genitalia | 2.68e-16 | 17 |
indifferent gonad | 2.68e-16 | 17 |
gonad | 2.43e-15 | 18 |
gonad primordium | 2.43e-15 | 18 |
testis | 2.84e-15 | 14 |
male reproductive organ | 3.28e-14 | 15 |
male organism | 2.79e-13 | 16 |
male reproductive system | 2.79e-13 | 16 |
mesoderm | 1.20e-11 | 120 |
mesoderm-derived structure | 1.20e-11 | 120 |
presumptive mesoderm | 1.20e-11 | 120 |
reproductive organ | 2.86e-11 | 24 |
reproductive structure | 2.49e-10 | 26 |
reproductive system | 2.49e-10 | 26 |
body cavity | 5.74e-07 | 37 |
body cavity or lining | 5.74e-07 | 37 |
body cavity precursor | 9.29e-07 | 38 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.