FFCP PHASE1:Mm9::chr9:21731959..21732007,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=235043|HGNC=|MCL_coexpression_id=0|UniProt=Q91XE8|association_with_transcript=0bp_to_NM_001253867,NM_001253868,NM_001253870,NM_178577,NR_045606_5end|description=CAGE_peak_2_at_Tmem205_5end|id=chr9:21731959..21732007,-|ontology_enrichment_celltype=CL:0000117!5.50e-07!23;CL:0000337!5.50e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,1.04e-07,23;CL:0000337,1.04e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!6.46e-12!34;UBERON:0002791!2.72e-11!29;UBERON:0003528!2.72e-11!29;UBERON:0001893!2.72e-11!29;UBERON:0003080!2.41e-10!40;UBERON:0002780!4.45e-10!39;UBERON:0001890!4.45e-10!39;UBERON:0006240!4.45e-10!39;UBERON:0001049!1.00e-09!52;UBERON:0005068!1.00e-09!52;UBERON:0006241!1.00e-09!52;UBERON:0007135!1.00e-09!52;UBERON:0000955!1.12e-09!50;UBERON:0006238!1.12e-09!50;UBERON:0002616!3.03e-09!49;UBERON:0000956!5.11e-09!21;UBERON:0001869!5.11e-09!21;UBERON:0000203!5.11e-09!21;UBERON:0001017!2.58e-07!73;UBERON:0005743!2.58e-07!73;UBERON:0002619!3.08e-07!17;UBERON:0002346!5.32e-07!71;UBERON:0003075!5.32e-07!71;UBERON:0007284!5.32e-07!71;UBERON:0003056!6.25e-07!49;UBERON:0000033!7.20e-07!63|ontology_enrichment_uberon_v019_2=UBERON:0002020,8.42e-13,34;UBERON:0003528,1.84e-12,29;UBERON:0002791,1.84e-12,29;UBERON:0001893,1.84e-12,29;UBERON:0003080,2.13e-10,40;UBERON:0002780,4.36e-10,39;UBERON:0001890,4.36e-10,39;UBERON:0006240,4.36e-10,39;UBERON:0000956,1.04e-09,21;UBERON:0001869,1.04e-09,21;UBERON:0000203,1.04e-09,21;UBERON:0000073,1.92e-08,54;UBERON:0000955,6.47e-08,47;UBERON:0006238,6.47e-08,47;UBERON:0001049,1.03e-07,52;UBERON:0005068,1.03e-07,52;UBERON:0006241,1.03e-07,52;UBERON:0007135,1.03e-07,52;UBERON:0002619,1.35e-07,17;UBERON:0002616,1.84e-07,46;UBERON:0002021,7.19e-07,10;UBERON:0000411,7.19e-07,10;UBERON:0001950,7.19e-07,10|phase1_expression=2.24208385946712,0,0,0.60492842261366,0,0.839396359559449,0.934450562382103,0.258246646883153,0,0,0,0,0,0,0.333109761815663,0.202475267389826,0,0,0.137114433605739,0,21.8561255688249,0.496454756004426,0,1.11994695955385,1.37645568640302,1.14846392823004,0.86152399231815,1.72376986148711,0.570070258369122,0.504060259519861,0.443461021310609,2.54012269383853,4.30545351309199,0,3.75507105676657,3.15845826181135,3.06254034393554,15.0671387065287,17.9707129240474,12.0410461113974,8.82347232046521,8.19654581950135,12.1377588257788,0.377690453926732,0.101376931219515,0,0.782391344348039,0.872100625521786,0.659058548203415,0.972149495371417,0.139986421625363,0,0.167782606057736,0,0,0.514518872071894,0.573066879877513,0,2.63011399117477,2.11596391708813,3.1691570175309,0.338844532069132,0,1.3498495759221,0.988866362566974,1.4209602298922,1.19840044207362,1.15265491596466,3.42175720617976,4.86021377994086,5.8890989178387,0.856952953211411,1.76694832761291,2.32732518508413,2.68367318851062,2.75765635983006,1.10115880999389,1.14918604276669,1.68967186581868,1.31886287730194,1.28082701043374,2.08365348222704,1.95428099300967,2.8138130501584,1.68078072554491,3.53554302568401,1.28134512719193,1.67759501242771,0.151452386666368,0.0755715601067855,1.15945795480671,3.44169550792555,1.3599426674155,3.2382191498269,2.59910566979068,2.24013443548668,2.66844398250329,0,0,0,3.52108549441701,0,0,0,0.216491041011214,0.760079596425296,0.505524445014783,3.9964357901671,0.517875767294343,0.742210695324124,0.520455980298408,2.74018930480927,1.84492397804847,2.71300752994721,1.64624189989987,2.26199864393416,0.247194967734374,0.578397427679647,0.884610551949874,0.161766849947409,0.883366073841574,0,1.86391761218122,0.878342391034642,0.83778682725382,0.510914110417183,7.30872259486114,8.99854096490112,4.44745794755726,1.79748767285787,5.03250663100489,3.76963056338593,1.73824320192276,3.58001640262463,2.28566849015516,1.78465389374533,0.712875546952214,1.11966273549084,0.505445516867349,1.05220927943237,0,0.689706313300419,0.720248519221397,0.753524089178575,0.408218994907967,0,0.281105173679186,0.776110112217047,0.431135985865684,0.189106080167819,0.703804496655795,2.41115305670332,2.22437799380478,1.74126083261083,2.88094990971121,1.19420560091096,6.31991868581911,6.17634977075316,4.83077948972507,0.207125772535502,0.703578179943289,0.900310307305074,1.18372367792605,1.96764231747404,0.925602677324269,0.930135779001631,0.268273401399619,1.16765342367169,0.658239399653922,1.31333971263276,0.810688095458557,0.877199924551994,0.878200461164203,1.8788898626452,6.51898840548794,3.2929475961371,0,0.528901133327089,0,0.696710015581316,0.38660238396628,0.80673409849337,1.11189021922435,0.380451252225118,1.42358718463353,0.329397909448022,1.00534083520108,1.59165177632921,0.19496408711912,0.898819408654221,0.864552199498777,0.199141273254367,0.379335801906163,0.685491075658373,0,0.814605311381257,0.581857461502877,0.140271639780637,0.442655759869801,0.590440591918409,0.627994911365499,0.493588655687202,2.07516838961004,0.667380422864376,0.196558995113203,0.449724224769707,1.01430060694251,1.20588579876208,0.7638775553442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| ||
|EntrezGene=235043 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=Q91XE8 | |||
|association_with_transcript=0bp_to_NM_001253867,NM_001253868,NM_001253870,NM_178577,NR_045606_5end | |||
|description=CAGE_peak_2_at_Tmem205_5end | |||
|id=chr9:21731959..21732007,- | |||
|ontology_enrichment_celltype=CL:0000117!5.50e-07!23;CL:0000337!5.50e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.04e-07,23;CL:0000337,1.04e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!6.46e-12!34;UBERON:0002791!2.72e-11!29;UBERON:0003528!2.72e-11!29;UBERON:0001893!2.72e-11!29;UBERON:0003080!2.41e-10!40;UBERON:0002780!4.45e-10!39;UBERON:0001890!4.45e-10!39;UBERON:0006240!4.45e-10!39;UBERON:0001049!1.00e-09!52;UBERON:0005068!1.00e-09!52;UBERON:0006241!1.00e-09!52;UBERON:0007135!1.00e-09!52;UBERON:0000955!1.12e-09!50;UBERON:0006238!1.12e-09!50;UBERON:0002616!3.03e-09!49;UBERON:0000956!5.11e-09!21;UBERON:0001869!5.11e-09!21;UBERON:0000203!5.11e-09!21;UBERON:0001017!2.58e-07!73;UBERON:0005743!2.58e-07!73;UBERON:0002619!3.08e-07!17;UBERON:0002346!5.32e-07!71;UBERON:0003075!5.32e-07!71;UBERON:0007284!5.32e-07!71;UBERON:0003056!6.25e-07!49;UBERON:0000033!7.20e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,8.42e-13,34;UBERON:0003528,1.84e-12,29;UBERON:0002791,1.84e-12,29;UBERON:0001893,1.84e-12,29;UBERON:0003080,2.13e-10,40;UBERON:0002780,4.36e-10,39;UBERON:0001890,4.36e-10,39;UBERON:0006240,4.36e-10,39;UBERON:0000956,1.04e-09,21;UBERON:0001869,1.04e-09,21;UBERON:0000203,1.04e-09,21;UBERON:0000073,1.92e-08,54;UBERON:0000955,6.47e-08,47;UBERON:0006238,6.47e-08,47;UBERON:0001049,1.03e-07,52;UBERON:0005068,1.03e-07,52;UBERON:0006241,1.03e-07,52;UBERON:0007135,1.03e-07,52;UBERON:0002619,1.35e-07,17;UBERON:0002616,1.84e-07,46;UBERON:0002021,7.19e-07,10;UBERON:0000411,7.19e-07,10;UBERON:0001950,7.19e-07,10 | |||
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| |||
|short_description=p2@Tmem205 | |||
}} | |||
Revision as of 17:27, 14 September 2013
| Short description: | p2@Tmem205 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Tmem205_5end |
| Coexpression cluster: | MCL_coexpression_mm9:0 |
| Association with transcript: | 0bp_to_NM_001253867, NM_001253868, NM_001253870, NM_178577, NR_045606_5end |
| EntrezGene: | Tmem205 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| CNS neuron (sensu Vertebrata) | 1.04e-07 | 23 |
| neuroblast (sensu Vertebrata) | 1.04e-07 | 23 |
| Ontology term | p-value | n |
|---|---|---|
| gray matter | 8.42e-13 | 34 |
| brain grey matter | 1.84e-12 | 29 |
| regional part of telencephalon | 1.84e-12 | 29 |
| telencephalon | 1.84e-12 | 29 |
| anterior neural tube | 2.13e-10 | 40 |
| regional part of forebrain | 4.36e-10 | 39 |
| forebrain | 4.36e-10 | 39 |
| future forebrain | 4.36e-10 | 39 |
| cerebral cortex | 1.04e-09 | 21 |
| cerebral hemisphere | 1.04e-09 | 21 |
| pallium | 1.04e-09 | 21 |
| regional part of nervous system | 1.92e-08 | 54 |
| brain | 6.47e-08 | 47 |
| future brain | 6.47e-08 | 47 |
| neural tube | 1.03e-07 | 52 |
| neural rod | 1.03e-07 | 52 |
| future spinal cord | 1.03e-07 | 52 |
| neural keel | 1.03e-07 | 52 |
| regional part of cerebral cortex | 1.35e-07 | 17 |
| regional part of brain | 1.84e-07 | 46 |
| occipital lobe | 7.19e-07 | 10 |
| visual cortex | 7.19e-07 | 10 |
| neocortex | 7.19e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
