FFCP PHASE1:Mm9::chr7:28860352..28860369,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=273|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr7:28860352..28860369,+|id=chr7:28860352..28860369,+|ontology_enrichment_celltype=CL:0000239!7.46e-12!6;CL:0000677!7.46e-12!6;CL:0000212!7.46e-12!6;CL:0000584!7.46e-12!6;CL:0000075!4.97e-10!7;CL:0002563!1.34e-07!9;CL:0002251!1.34e-07!9;CL:0000473!7.93e-07!3;CL:0000627!7.93e-07!3;CL:0000682!7.93e-07!3|ontology_enrichment_celltype_v019_2=CL:0000239,1.70e-15,6;CL:0000677,1.70e-15,6;CL:0000584,1.70e-15,6;CL:0000075,2.95e-13,7;CL:0000682,1.09e-11,3;CL:0002563,2.89e-10,9;CL:0002251,2.89e-10,9;CL:0000066,1.89e-08,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!2.71e-23!43;UBERON:0005409!3.07e-21!59;UBERON:0000344!1.13e-17!15;UBERON:0001242!3.99e-14!13;UBERON:0000060!3.99e-14!13;UBERON:0001262!3.99e-14!13;UBERON:0004786!3.99e-14!13;UBERON:0004923!6.78e-10!24;UBERON:0001007!1.79e-09!128;UBERON:0001555!1.79e-09!128;UBERON:0007026!1.79e-09!128;UBERON:0004119!3.37e-09!130;UBERON:0000925!3.37e-09!130;UBERON:0006595!3.37e-09!130;UBERON:0004921!5.58e-08!126;UBERON:0004185!5.58e-08!126;UBERON:0003350!1.34e-07!9;UBERON:0004808!1.34e-07!9;UBERON:0001277!1.34e-07!9;UBERON:0000331!5.81e-07!3;UBERON:0002116!5.81e-07!3;UBERON:0001204!5.81e-07!3;UBERON:0001168!5.81e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.76e-36,31;UBERON:0000344,9.75e-29,15;UBERON:0005409,1.59e-25,47;UBERON:0001242,4.03e-22,13;UBERON:0001262,4.03e-22,13;UBERON:0004786,4.03e-22,13;UBERON:0004923,2.98e-17,24;UBERON:0002108,2.89e-15,4;UBERON:0000331,6.01e-12,3;UBERON:0002116,6.01e-12,3;UBERON:0001204,6.01e-12,3;UBERON:0001168,6.01e-12,3;UBERON:0001007,9.09e-11,116;UBERON:0001555,9.09e-11,116;UBERON:0007026,9.09e-11,116;UBERON:0004119,1.60e-10,118;UBERON:0000925,1.60e-10,118;UBERON:0006595,1.60e-10,118;UBERON:0003350,2.89e-10,9;UBERON:0004808,2.89e-10,9;UBERON:0001277,2.89e-10,9;UBERON:0001962,8.16e-09,2;UBERON:0001961,8.16e-09,2;UBERON:0001744,8.16e-09,2;UBERON:0004921,1.70e-08,114;UBERON:0000485,2.34e-08,11;UBERON:0001155,2.98e-08,2;UBERON:0000059,2.98e-08,2|phase1_expression=0,1.04692622291808,1.36499771816861,2.11724947914781,0.500895729946347,22.1600638923695,22.8940387783615,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,3.83981814704176,4.5881856213434,1.14846392823004,4.73838195774982,3.44753972297422,12.9215925230334,3.52842181663903,1.77384408524244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.68510327831436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,3.57639877292028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.63460661282178,2.11560453330835,0,0,0,0.403367049246685,0.444756087689741,0.570676878337677,4.74529061544512,1.64698954724011,0.754005626400808,0.795825888164603,0.58489226135736,3.59527763461689,4.10662294761919,5.97423819763102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491764273019036,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32977250588296,0,0,0,0,3.20628920292836,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0,0.218362563746178,0,0,0.523511883968059,2.07383957266869,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0,0,0.194915761479505,0,0,0,0,0,0,0,0,0.549454872801795,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320919209591815,0,0,0.188626341386076,0,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214871054048298,0,0,0|short_description=p@chr7:28860352..28860369,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=273 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr7:28860352..28860369,+ | |||
|id=chr7:28860352..28860369,+ | |||
|ontology_enrichment_celltype=CL:0000239!7.46e-12!6;CL:0000677!7.46e-12!6;CL:0000212!7.46e-12!6;CL:0000584!7.46e-12!6;CL:0000075!4.97e-10!7;CL:0002563!1.34e-07!9;CL:0002251!1.34e-07!9;CL:0000473!7.93e-07!3;CL:0000627!7.93e-07!3;CL:0000682!7.93e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,1.70e-15,6;CL:0000677,1.70e-15,6;CL:0000584,1.70e-15,6;CL:0000075,2.95e-13,7;CL:0000682,1.09e-11,3;CL:0002563,2.89e-10,9;CL:0002251,2.89e-10,9;CL:0000066,1.89e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!2.71e-23!43;UBERON:0005409!3.07e-21!59;UBERON:0000344!1.13e-17!15;UBERON:0001242!3.99e-14!13;UBERON:0000060!3.99e-14!13;UBERON:0001262!3.99e-14!13;UBERON:0004786!3.99e-14!13;UBERON:0004923!6.78e-10!24;UBERON:0001007!1.79e-09!128;UBERON:0001555!1.79e-09!128;UBERON:0007026!1.79e-09!128;UBERON:0004119!3.37e-09!130;UBERON:0000925!3.37e-09!130;UBERON:0006595!3.37e-09!130;UBERON:0004921!5.58e-08!126;UBERON:0004185!5.58e-08!126;UBERON:0003350!1.34e-07!9;UBERON:0004808!1.34e-07!9;UBERON:0001277!1.34e-07!9;UBERON:0000331!5.81e-07!3;UBERON:0002116!5.81e-07!3;UBERON:0001204!5.81e-07!3;UBERON:0001168!5.81e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.76e-36,31;UBERON:0000344,9.75e-29,15;UBERON:0005409,1.59e-25,47;UBERON:0001242,4.03e-22,13;UBERON:0001262,4.03e-22,13;UBERON:0004786,4.03e-22,13;UBERON:0004923,2.98e-17,24;UBERON:0002108,2.89e-15,4;UBERON:0000331,6.01e-12,3;UBERON:0002116,6.01e-12,3;UBERON:0001204,6.01e-12,3;UBERON:0001168,6.01e-12,3;UBERON:0001007,9.09e-11,116;UBERON:0001555,9.09e-11,116;UBERON:0007026,9.09e-11,116;UBERON:0004119,1.60e-10,118;UBERON:0000925,1.60e-10,118;UBERON:0006595,1.60e-10,118;UBERON:0003350,2.89e-10,9;UBERON:0004808,2.89e-10,9;UBERON:0001277,2.89e-10,9;UBERON:0001962,8.16e-09,2;UBERON:0001961,8.16e-09,2;UBERON:0001744,8.16e-09,2;UBERON:0004921,1.70e-08,114;UBERON:0000485,2.34e-08,11;UBERON:0001155,2.98e-08,2;UBERON:0000059,2.98e-08,2 | |||
|phase1_expression=0,1.04692622291808,1.36499771816861,2.11724947914781,0.500895729946347,22.1600638923695,22.8940387783615,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,3.83981814704176,4.5881856213434,1.14846392823004,4.73838195774982,3.44753972297422,12.9215925230334,3.52842181663903,1.77384408524244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.68510327831436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,3.57639877292028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.63460661282178,2.11560453330835,0,0,0,0.403367049246685,0.444756087689741,0.570676878337677,4.74529061544512,1.64698954724011,0.754005626400808,0.795825888164603,0.58489226135736,3.59527763461689,4.10662294761919,5.97423819763102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491764273019036,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32977250588296,0,0,0,0,3.20628920292836,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216010681643603,0,0.218362563746178,0,0,0.523511883968059,2.07383957266869,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0,0,0.194915761479505,0,0,0,0,0,0,0,0,0.549454872801795,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320919209591815,0,0,0.188626341386076,0,0.0640251524048693,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p@chr7:28860352..28860369,+ | |||
}} |
Revision as of 13:00, 14 September 2013
Short description: | p@chr7:28860352..28860369, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:28860352..28860369, + |
Coexpression cluster: | MCL_coexpression_mm9:273 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 1.70e-15 | 6 |
gut absorptive cell | 1.70e-15 | 6 |
enterocyte | 1.70e-15 | 6 |
columnar/cuboidal epithelial cell | 2.95e-13 | 7 |
M cell of gut | 1.09e-11 | 3 |
intestinal epithelial cell | 2.89e-10 | 9 |
epithelial cell of alimentary canal | 2.89e-10 | 9 |
epithelial cell | 1.89e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 3.76e-36 | 31 |
mucosa | 9.75e-29 | 15 |
gastrointestinal system | 1.59e-25 | 47 |
intestinal mucosa | 4.03e-22 | 13 |
wall of intestine | 4.03e-22 | 13 |
gastrointestinal system mucosa | 4.03e-22 | 13 |
organ component layer | 2.98e-17 | 24 |
small intestine | 2.89e-15 | 4 |
ileal mucosa | 6.01e-12 | 3 |
ileum | 6.01e-12 | 3 |
mucosa of small intestine | 6.01e-12 | 3 |
wall of small intestine | 6.01e-12 | 3 |
digestive system | 9.09e-11 | 116 |
digestive tract | 9.09e-11 | 116 |
primitive gut | 9.09e-11 | 116 |
endoderm-derived structure | 1.60e-10 | 118 |
endoderm | 1.60e-10 | 118 |
presumptive endoderm | 1.60e-10 | 118 |
epithelium of mucosa | 2.89e-10 | 9 |
gastrointestinal system epithelium | 2.89e-10 | 9 |
intestinal epithelium | 2.89e-10 | 9 |
gut-associated lymphoid tissue | 8.16e-09 | 2 |
mucosa-associated lymphoid tissue | 8.16e-09 | 2 |
lymphoid tissue | 8.16e-09 | 2 |
subdivision of digestive tract | 1.70e-08 | 114 |
simple columnar epithelium | 2.34e-08 | 11 |
colon | 2.98e-08 | 2 |
large intestine | 2.98e-08 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.