FFCP PHASE1:Mm9::chr7:128850898..128850974,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=76179|HGNC=|MCL_coexpression_id=1|UniProt=E9Q6Y8|association_with_transcript=-131bp_to_ENSMUST00000046929,NM_001033173,uc012ftd.1_5end|description=CAGE_peak_1_at_Usp31_5end|id=chr7:128850898..128850974,-|ontology_enrichment_celltype=CL:0000540!9.57e-10!33;CL:0000047!9.57e-10!33;CL:0000031!9.57e-10!33;CL:0000404!9.57e-10!33;CL:0000117!1.95e-08!23;CL:0000337!1.95e-08!23;CL:0000393!6.60e-07!39;CL:0000211!6.60e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,9.57e-10,33;CL:0000047,9.57e-10,33;CL:0000031,9.57e-10,33;CL:0000404,9.57e-10,33;CL:0000117,1.95e-08,23;CL:0000337,1.95e-08,23;CL:0000393,6.60e-07,39;CL:0000211,6.60e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!5.99e-17!102;UBERON:0000924!5.99e-17!102;UBERON:0006601!5.99e-17!102;UBERON:0000073!2.90e-16!75;UBERON:0001016!2.90e-16!75;UBERON:0001017!3.65e-16!73;UBERON:0005743!3.65e-16!73;UBERON:0002346!3.27e-15!71;UBERON:0003075!3.27e-15!71;UBERON:0007284!3.27e-15!71;UBERON:0000033!1.56e-14!63;UBERON:0000955!2.32e-14!50;UBERON:0006238!2.32e-14!50;UBERON:0001049!3.73e-14!52;UBERON:0005068!3.73e-14!52;UBERON:0006241!3.73e-14!52;UBERON:0007135!3.73e-14!52;UBERON:0002616!7.67e-14!49;UBERON:0007811!2.14e-12!86;UBERON:0003056!2.29e-12!49;UBERON:0002020!5.09e-12!34;UBERON:0000153!6.01e-12!94;UBERON:0003080!9.93e-11!40;UBERON:0002791!1.19e-10!29;UBERON:0003528!1.19e-10!29;UBERON:0001893!1.19e-10!29;UBERON:0002780!3.79e-10!39;UBERON:0001890!3.79e-10!39;UBERON:0006240!3.79e-10!39;UBERON:0000475!2.29e-07!200;UBERON:0000956!2.51e-07!21;UBERON:0001869!2.51e-07!21;UBERON:0000203!2.51e-07!21;UBERON:0002021!3.34e-07!10;UBERON:0000411!3.34e-07!10;UBERON:0001950!3.34e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.29e-18,95;UBERON:0000924,3.29e-18,95;UBERON:0006601,3.29e-18,95;UBERON:0010371,5.11e-17,73;UBERON:0002346,5.99e-17,64;UBERON:0003075,5.99e-17,64;UBERON:0007284,5.99e-17,64;UBERON:0001016,2.90e-16,75;UBERON:0001017,3.65e-16,73;UBERON:0000073,2.40e-15,54;UBERON:0001049,3.73e-14,52;UBERON:0005068,3.73e-14,52;UBERON:0006241,3.73e-14,52;UBERON:0007135,3.73e-14,52;UBERON:0000955,1.50e-12,47;UBERON:0006238,1.50e-12,47;UBERON:0003056,2.29e-12,49;UBERON:0002616,4.74e-12,46;UBERON:0002020,5.09e-12,34;UBERON:0003080,9.93e-11,40;UBERON:0003528,1.19e-10,29;UBERON:0002791,1.19e-10,29;UBERON:0001893,1.19e-10,29;UBERON:0002780,3.79e-10,39;UBERON:0001890,3.79e-10,39;UBERON:0006240,3.79e-10,39;UBERON:0010314,3.58e-09,92;UBERON:0000956,2.51e-07,21;UBERON:0001869,2.51e-07,21;UBERON:0000203,2.51e-07,21;UBERON:0002021,3.34e-07,10;UBERON:0000411,3.34e-07,10;UBERON:0001950,3.34e-07,10|phase1_expression=13.4525031568027,0.697950815278722,1.36499771816861,1.20985684522732,3.00537437967808,4.02910252588535,3.97141489012394,15.236552166106,88.9784723998534,92.2214233708654,55.3034037368381,64.4559044682318,15.9216678836021,18.9702273249224,17.6548173762301,14.7806945194573,9.79386629379405,11.5143690355757,8.91243818437302,16.1268067683251,26.0232467862274,8.93618560807968,11.2315909329742,1.27993938234725,2.75291137280604,2.8711598205751,2.58457197695445,1.50829862880122,1.71021077510736,3.2763916868791,2.66076612786366,35.5617177137393,39.3641464054125,79.2408405077194,6.35473563452804,9.30914014007557,8.5751129630195,3.34825304589526,3.1253413780952,5.75876118371178,4.1176204162171,2.73218193983378,2.91306211818692,11.0789199818508,11.4555932278051,11.1963518818626,14.8654355426127,8.50298109883741,6.59058548203415,7.77719596297134,6.7193482380174,1.43752564364972,13.7581736967344,16.6833292662609,25.2070349356848,11.8339340576536,10.601737277734,8.25075347643908,20.2316460859598,22.2176211294254,25.3532561402472,5.76035704517525,6.22506357277798,7.19919773825119,10.8775299882367,7.104801149461,8.08920298399693,5.37905627450176,20.9453016863125,19.4408551197635,20.1911962897327,20.8525218614777,15.2399293256613,23.7632150477011,18.0189485514284,14.7075005857603,105.711245759413,70.4834106230236,74.3455620960218,23.2119866405141,19.6698433745181,19.2737947106001,66.4455537623287,49.5231096827878,67.8424220129037,30.0521157183141,24.0608140550484,24.6047268489397,25.3682747666167,12.3937358575128,13.3337664802772,6.88339101585109,6.11974200336975,5.39703191637817,8.4470934268197,5.37632264516803,15.308441794361,8.35108580632483,4.93593408745451,6.00677276667578,10.563256483251,3.84979432242953,5.09610479413291,0,7.14420435337007,6.08063677140237,7.07734223020697,11.5325718516251,4.91981978929626,22.4147629987885,15.4401940821861,11.5696881758614,9.68585088475446,11.1534754008941,16.344830291863,9.80199412371469,14.8316980640624,12.7247434089522,14.153768831198,15.2060838950565,11.7046004784009,12.1218813283806,9.31958806090611,60.8984057784018,44.8215952580794,5.8755122697976,6.11057134980193,2.39961092397363,6.22644112658017,77.5915512116982,75.4875994650734,25.2565247746857,75.439754963448,69.5546043938499,75.4270601751203,63.9230576486965,10.1839363850316,10.9478134136882,7.58168275301024,14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| ||
|EntrezGene=76179 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=E9Q6Y8 | |||
|association_with_transcript=-131bp_to_ENSMUST00000046929,NM_001033173,uc012ftd.1_5end | |||
|description=CAGE_peak_1_at_Usp31_5end | |||
|id=chr7:128850898..128850974,- | |||
|ontology_enrichment_celltype=CL:0000540!9.57e-10!33;CL:0000047!9.57e-10!33;CL:0000031!9.57e-10!33;CL:0000404!9.57e-10!33;CL:0000117!1.95e-08!23;CL:0000337!1.95e-08!23;CL:0000393!6.60e-07!39;CL:0000211!6.60e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,9.57e-10,33;CL:0000047,9.57e-10,33;CL:0000031,9.57e-10,33;CL:0000404,9.57e-10,33;CL:0000117,1.95e-08,23;CL:0000337,1.95e-08,23;CL:0000393,6.60e-07,39;CL:0000211,6.60e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.99e-17!102;UBERON:0000924!5.99e-17!102;UBERON:0006601!5.99e-17!102;UBERON:0000073!2.90e-16!75;UBERON:0001016!2.90e-16!75;UBERON:0001017!3.65e-16!73;UBERON:0005743!3.65e-16!73;UBERON:0002346!3.27e-15!71;UBERON:0003075!3.27e-15!71;UBERON:0007284!3.27e-15!71;UBERON:0000033!1.56e-14!63;UBERON:0000955!2.32e-14!50;UBERON:0006238!2.32e-14!50;UBERON:0001049!3.73e-14!52;UBERON:0005068!3.73e-14!52;UBERON:0006241!3.73e-14!52;UBERON:0007135!3.73e-14!52;UBERON:0002616!7.67e-14!49;UBERON:0007811!2.14e-12!86;UBERON:0003056!2.29e-12!49;UBERON:0002020!5.09e-12!34;UBERON:0000153!6.01e-12!94;UBERON:0003080!9.93e-11!40;UBERON:0002791!1.19e-10!29;UBERON:0003528!1.19e-10!29;UBERON:0001893!1.19e-10!29;UBERON:0002780!3.79e-10!39;UBERON:0001890!3.79e-10!39;UBERON:0006240!3.79e-10!39;UBERON:0000475!2.29e-07!200;UBERON:0000956!2.51e-07!21;UBERON:0001869!2.51e-07!21;UBERON:0000203!2.51e-07!21;UBERON:0002021!3.34e-07!10;UBERON:0000411!3.34e-07!10;UBERON:0001950!3.34e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.29e-18,95;UBERON:0000924,3.29e-18,95;UBERON:0006601,3.29e-18,95;UBERON:0010371,5.11e-17,73;UBERON:0002346,5.99e-17,64;UBERON:0003075,5.99e-17,64;UBERON:0007284,5.99e-17,64;UBERON:0001016,2.90e-16,75;UBERON:0001017,3.65e-16,73;UBERON:0000073,2.40e-15,54;UBERON:0001049,3.73e-14,52;UBERON:0005068,3.73e-14,52;UBERON:0006241,3.73e-14,52;UBERON:0007135,3.73e-14,52;UBERON:0000955,1.50e-12,47;UBERON:0006238,1.50e-12,47;UBERON:0003056,2.29e-12,49;UBERON:0002616,4.74e-12,46;UBERON:0002020,5.09e-12,34;UBERON:0003080,9.93e-11,40;UBERON:0003528,1.19e-10,29;UBERON:0002791,1.19e-10,29;UBERON:0001893,1.19e-10,29;UBERON:0002780,3.79e-10,39;UBERON:0001890,3.79e-10,39;UBERON:0006240,3.79e-10,39;UBERON:0010314,3.58e-09,92;UBERON:0000956,2.51e-07,21;UBERON:0001869,2.51e-07,21;UBERON:0000203,2.51e-07,21;UBERON:0002021,3.34e-07,10;UBERON:0000411,3.34e-07,10;UBERON:0001950,3.34e-07,10 | |||
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| |||
|short_description=p1@Usp31 | |||
}} |
Revision as of 11:39, 14 September 2013
Short description: | p1@Usp31 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Usp31_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -131bp_to_ENSMUST00000046929, NM_001033173, uc012ftd.1_5end |
EntrezGene: | Usp31 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 9.57e-10 | 33 |
neuronal stem cell | 9.57e-10 | 33 |
neuroblast | 9.57e-10 | 33 |
electrically signaling cell | 9.57e-10 | 33 |
CNS neuron (sensu Vertebrata) | 1.95e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.95e-08 | 23 |
electrically responsive cell | 6.60e-07 | 39 |
electrically active cell | 6.60e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.29e-18 | 95 |
ectoderm | 3.29e-18 | 95 |
presumptive ectoderm | 3.29e-18 | 95 |
ecto-epithelium | 5.11e-17 | 73 |
neurectoderm | 5.99e-17 | 64 |
neural plate | 5.99e-17 | 64 |
presumptive neural plate | 5.99e-17 | 64 |
nervous system | 2.90e-16 | 75 |
central nervous system | 3.65e-16 | 73 |
regional part of nervous system | 2.40e-15 | 54 |
neural tube | 3.73e-14 | 52 |
neural rod | 3.73e-14 | 52 |
future spinal cord | 3.73e-14 | 52 |
neural keel | 3.73e-14 | 52 |
brain | 1.50e-12 | 47 |
future brain | 1.50e-12 | 47 |
pre-chordal neural plate | 2.29e-12 | 49 |
regional part of brain | 4.74e-12 | 46 |
gray matter | 5.09e-12 | 34 |
anterior neural tube | 9.93e-11 | 40 |
brain grey matter | 1.19e-10 | 29 |
regional part of telencephalon | 1.19e-10 | 29 |
telencephalon | 1.19e-10 | 29 |
regional part of forebrain | 3.79e-10 | 39 |
forebrain | 3.79e-10 | 39 |
future forebrain | 3.79e-10 | 39 |
structure with developmental contribution from neural crest | 3.58e-09 | 92 |
cerebral cortex | 2.51e-07 | 21 |
cerebral hemisphere | 2.51e-07 | 21 |
pallium | 2.51e-07 | 21 |
occipital lobe | 3.34e-07 | 10 |
visual cortex | 3.34e-07 | 10 |
neocortex | 3.34e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.