FFCP PHASE1:Mm9::chr6:89545541..89545639,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=66098|HGNC=|MCL_coexpression_id=60|UniProt=Q3TJS8|association_with_transcript=0bp_to_ENSMUST00000168027_5end|description=CAGE_peak_1_at_Chchd6_5end|id=chr6:89545541..89545639,-|ontology_enrichment_celltype=CL:0000117!6.25e-14!23;CL:0000337!6.25e-14!23;CL:0000221!6.08e-13!44;CL:0000133!6.08e-13!44;CL:0002319!1.29e-12!43;CL:0000540!2.36e-10!33;CL:0000047!2.36e-10!33;CL:0000031!2.36e-10!33;CL:0000404!2.36e-10!33;CL:0000055!1.28e-09!50;CL:0000393!7.50e-08!39;CL:0000211!7.50e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,6.25e-14,23;CL:0000337,6.25e-14,23;CL:0000221,6.07e-13,44;CL:0000133,6.07e-13,44;CL:0002319,1.29e-12,43;CL:0000540,2.36e-10,33;CL:0000047,2.36e-10,33;CL:0000031,2.36e-10,33;CL:0000404,2.36e-10,33;CL:0000393,7.50e-08,39;CL:0000211,7.50e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.42e-29!73;UBERON:0005743!2.42e-29!73;UBERON:0000073!5.94e-28!75;UBERON:0001016!5.94e-28!75;UBERON:0001049!3.15e-26!52;UBERON:0005068!3.15e-26!52;UBERON:0006241!3.15e-26!52;UBERON:0007135!3.15e-26!52;UBERON:0002346!2.18e-25!71;UBERON:0003075!2.18e-25!71;UBERON:0007284!2.18e-25!71;UBERON:0000955!1.50e-24!50;UBERON:0006238!1.50e-24!50;UBERON:0000033!1.86e-24!63;UBERON:0002616!4.21e-24!49;UBERON:0004121!3.84e-23!102;UBERON:0000924!3.84e-23!102;UBERON:0006601!3.84e-23!102;UBERON:0003056!3.73e-21!49;UBERON:0003080!4.16e-20!40;UBERON:0002020!4.86e-20!34;UBERON:0002780!1.40e-19!39;UBERON:0001890!1.40e-19!39;UBERON:0006240!1.40e-19!39;UBERON:0002791!9.42e-17!29;UBERON:0003528!9.42e-17!29;UBERON:0001893!9.42e-17!29;UBERON:0007811!1.95e-16!86;UBERON:0000153!9.56e-15!94;UBERON:0000956!3.19e-12!21;UBERON:0001869!3.19e-12!21;UBERON:0000203!3.19e-12!21;UBERON:0002619!1.48e-10!17;UBERON:0002021!1.90e-07!10;UBERON:0000411!1.90e-07!10;UBERON:0001950!1.90e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.42e-29,73;UBERON:0001016,5.94e-28,75;UBERON:0000073,1.27e-27,54;UBERON:0002346,5.95e-27,64;UBERON:0003075,5.95e-27,64;UBERON:0007284,5.95e-27,64;UBERON:0001049,3.15e-26,52;UBERON:0005068,3.15e-26,52;UBERON:0006241,3.15e-26,52;UBERON:0007135,3.15e-26,52;UBERON:0004121,8.29e-24,95;UBERON:0000924,8.29e-24,95;UBERON:0006601,8.29e-24,95;UBERON:0010371,2.24e-23,73;UBERON:0000955,8.68e-23,47;UBERON:0006238,8.68e-23,47;UBERON:0002616,2.38e-22,46;UBERON:0003056,3.73e-21,49;UBERON:0003080,4.16e-20,40;UBERON:0010314,4.64e-20,92;UBERON:0002020,4.86e-20,34;UBERON:0002780,1.40e-19,39;UBERON:0001890,1.40e-19,39;UBERON:0006240,1.40e-19,39;UBERON:0003528,9.41e-17,29;UBERON:0002791,9.41e-17,29;UBERON:0001893,9.41e-17,29;UBERON:0000956,3.18e-12,21;UBERON:0001869,3.18e-12,21;UBERON:0000203,3.18e-12,21;UBERON:0002619,1.48e-10,17;UBERON:0002021,1.90e-07,10;UBERON:0000411,1.90e-07,10;UBERON:0001950,1.90e-07,10|phase1_expression=38.2755744580458,0.697950815278722,0.454999239389536,0.30246421130683,1.50268718983904,5.03637815735669,6.07392865548367,2.45334314538995,1.40788722151667,0.936258105287974,4.10923123741212,3.82906363177615,1.88320802924326,2.18551006047494,6.66219523631325,4.85940641735582,6.99561878128147,3.78554598429885,4.79900517620086,5.94145512517242,74.2427923018839,8.14185799847259,3.13439746966722,3.51983330145495,5.04700418347774,1.14846392823004,3.87685796543167,3.44753972297422,2.47030445293286,7.30887376303799,4.8780712344167,50.1674232033109,39.9792111929971,47.5445043046316,22.8192779603507,19.9481574430191,23.6836453264348,2.09265815368454,2.3440060335714,0.523523743973798,0,0,0.971020706062307,13.3450627054112,12.0638548151222,9.54443111240744,38.3371758730539,39.2445281484804,50.0884496634596,47.6353252731994,29.5371349629515,64.6886539642372,2.85230430298152,3.62681071005672,1.00828139742739,7.71778308107841,14.8997388768154,9.28209766099396,73.0362423703148,77.7616739529888,83.0319138593095,23.041428180701,26.6788438833342,16.6481447697059,11.8663963508037,19.8934432184908,29.6604109413221,66.8539851259505,35.4618474094994,48.0621140460819,44.1682418837902,76.8401148046232,79.2918062016293,56.100786040449,45.0473713785711,68.0221902091416,64.9683697896393,51.0749352340751,61.7498263690099,76.6259331712426,72.7326766639157,65.114171319595,60.3035277842983,95.1068810953539,50.5762200141241,81.3174895907323,72.6095572075425,70.8317894136142,9.99585751998029,9.14415877292105,19.1310562543107,8.60423876981386,7.47968467078526,9.17495425784289,7.14754059192436,4.92829575807069,17.2746636762055,22.3263722577256,22.0818103912438,26.5004680882755,28.7320576344428,23.0987659345772,38.2207859559969,56.8853362522665,14.9378818297738,12.92135313923,9.60496445528088,19.6396273116783,3.10725460376606,26.5711428926036,15.9606500624845,17.0500667854799,14.2981608298756,16.7302131013411,10.347806227942,15.4569907335501,5.6854842578906,21.8345028949067,3.5384422077995,6.95597454773859,4.63767188766826,5.33362778448744,5.59175283654366,25.7647101370161,26.8091784721222,5.10914110417183,20.967646788536,29.395233818677,21.2207279212018,52.8760957099024,50.3250663100489,60.6910520705135,55.6237824615285,56.2574006126727,47.5834622041393,43.3184172390913,13.4427960282417,8.58408097209642,19.7123751578266,16.8353484709179,19.2578255584801,34.9451198738879,23.2280147448901,22.9071323110287,21.5675702309709,23.4448108121275,25.8616759784852,21.7310831420773,17.6765754204931,13.8047438522508,14.2520410572799,18.1932457914887,19.1852601965663,11.1440693287093,11.3180175024369,16.5198441459349,19.6619692447706,15.9555702411123,17.6181369625267,14.0845525324141,13.8370375388847,19.8068267607116,17.7558551688908,17.3152523937715,18.0492522078233,22.5557926407896,19.5839583021722,14.3621371111618,15.3040660419537,9.68588038066662,7.53939928776458,8.18719929581861,10.7579556492615,9.66286215074677,48.3666881697493,44.5576971602302,0.991256348951394,4.7601101999438,13.8637362847902,15.5598570146494,12.8867461322093,9.4791256572971,9.11749979763968,9.13083005340284,6.16887780007865,5.76446341534038,8.29406189040889,9.15199771389294,7.60359939764569,8.08937467788799,2.80979464837102,3.18626037206988,25.9845024305722,22.9639510345555,16.9061603509621,18.3286195060783,24.2440608959532,16.3416460344442,19.2871438228985,17.4179974615931,21.1948282585856,25.7900072596563,4.15033677922008,7.34118465150814,11.0073037263394,8.54476027062444,7.91154473415161,7.71766911207734,9.67578236769395,8.63088412352432,4.53978634970099,7.68771956926628,7.18841032636773,3.34926852901653,7.80094182786401,5.05157755894223,4.66433275156972,3.85954817090694,17.5515530658274,27.4762547067203,17.2742875028547,19.3509397783714,12.4385831592906,15.5780819420889,11.9021820443007,8.78101415360095,11.9802709520705,10.6303051031412,9.40783135079174,9.17634562408133,10.5337838938196,8.38964539772767,4.52373851817817,2.71952841909355,7.37646409528554,12.1412168374082,39.9770969069602,34.1086007983311,21.3115428989678,7.32165688892682,18.2994767261429,21.4741309363151,13.5716740571663,15.0550342710108,10.9171350300373,12.7384438854975,14.1683745586213,11.6902343164525,9.48690667071656,38.5585579706168,14.4778886912434,22.2582004584069,15.3113741792362,18.476653772924,11.9470624505967,21.3646959816384,19.9533547596736,18.1060876565662,17.4228116799656,17.2163682848599,11.3708448994017,18.5402202033528,17.8248689192361,13.9056173491759,12.6502330289999,6.18813259489121,31.6608833351023,20.5269647195694,25.8717367565509,33.65091449996,27.1330557472679,23.7230527410754,24.517804069716,32.8822145043767,6.8054795338476,8.26145076368899,6.3953235435939,13.1909002353184,9.52640117505843,9.34850336386416,13.3697025283513,8.53532678674319,4.95517422270746,34.4891061739548,5.80960994712699,14.0343070214991,8.51894825900674,6.2161590811548,6.01454601972511,6.40578884978263,22.0971958992012,21.4125722055197,20.1771961754459,5.72802370809068,15.5004636854756,14.0290432317526,13.2846569210816,14.2180041289839,13.9752040797554,8.09186078308924,8.67861285116027,9.6849698534091,4.40690909192096,6.21339313086926,434.043562786827,9.71857549285862,19.3586433834804,10.8892665472667,15.37001899385,12.8406655372991,11.6183666259296,11.1975770965797,27.8925856172391,142.293047166518,225.239464893651,7.58426689507628,31.0169579393951,25.7804502483716,25.4644813036478,16.8285093927433,15.2984643181574,14.3032584928763,14.325884135934,13.1256384932592,14.098259231175,12.0991422164209,8.28391986287895,11.1605736302782,8.76576766361767,5.21479882314986,9.10142408833665,11.2142320761845,8.89788466729616,14.4892195524143,9.75948872346146,9.89018771043231,8.7891035422417,8.52672576860118,62.6874545304944,62.6042321649761,62.4456109648942,69.0849793021624,101.392212926055,86.8702981998156,79.6526550273531,81.0578165803597,76.5810671183306,77.1462864510212,21.5877682975087,21.1483182902546,24.0734384113329,13.8570828728928,25.9920321658698,28.4957438097522,20.6689456855502,19.3672953804561,23.1061830906107,22.490051846978,23.3200955899021,16.7877443833608,19.8519995836151,21.5764763604409,16.8285924039947,16.6702791949076,20.1638727144049,16.3972837394149,22.2526386433786,20.4606498986812,21.2578936478958,14.198064492747,21.6976932852062,22.9647338279079,21.2687199738647,20.392120501894,21.9513567447327,21.3086466264653,19.4199882799582,18.5176949647054,20.2865880992338,20.1934188869905,20.8707832016542,19.6769788306177,16.2041553224159,30.7267010863673,18.9484602840781,14.8261027293326,12.4337415844748,13.8972594045295,11.3615239454007|short_description=p1@Chchd6}} | ||
|EntrezGene=66098 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=Q3TJS8 | |||
|association_with_transcript=0bp_to_ENSMUST00000168027_5end | |||
|description=CAGE_peak_1_at_Chchd6_5end | |||
|id=chr6:89545541..89545639,- | |||
|ontology_enrichment_celltype=CL:0000117!6.25e-14!23;CL:0000337!6.25e-14!23;CL:0000221!6.08e-13!44;CL:0000133!6.08e-13!44;CL:0002319!1.29e-12!43;CL:0000540!2.36e-10!33;CL:0000047!2.36e-10!33;CL:0000031!2.36e-10!33;CL:0000404!2.36e-10!33;CL:0000055!1.28e-09!50;CL:0000393!7.50e-08!39;CL:0000211!7.50e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.25e-14,23;CL:0000337,6.25e-14,23;CL:0000221,6.07e-13,44;CL:0000133,6.07e-13,44;CL:0002319,1.29e-12,43;CL:0000540,2.36e-10,33;CL:0000047,2.36e-10,33;CL:0000031,2.36e-10,33;CL:0000404,2.36e-10,33;CL:0000393,7.50e-08,39;CL:0000211,7.50e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.42e-29!73;UBERON:0005743!2.42e-29!73;UBERON:0000073!5.94e-28!75;UBERON:0001016!5.94e-28!75;UBERON:0001049!3.15e-26!52;UBERON:0005068!3.15e-26!52;UBERON:0006241!3.15e-26!52;UBERON:0007135!3.15e-26!52;UBERON:0002346!2.18e-25!71;UBERON:0003075!2.18e-25!71;UBERON:0007284!2.18e-25!71;UBERON:0000955!1.50e-24!50;UBERON:0006238!1.50e-24!50;UBERON:0000033!1.86e-24!63;UBERON:0002616!4.21e-24!49;UBERON:0004121!3.84e-23!102;UBERON:0000924!3.84e-23!102;UBERON:0006601!3.84e-23!102;UBERON:0003056!3.73e-21!49;UBERON:0003080!4.16e-20!40;UBERON:0002020!4.86e-20!34;UBERON:0002780!1.40e-19!39;UBERON:0001890!1.40e-19!39;UBERON:0006240!1.40e-19!39;UBERON:0002791!9.42e-17!29;UBERON:0003528!9.42e-17!29;UBERON:0001893!9.42e-17!29;UBERON:0007811!1.95e-16!86;UBERON:0000153!9.56e-15!94;UBERON:0000956!3.19e-12!21;UBERON:0001869!3.19e-12!21;UBERON:0000203!3.19e-12!21;UBERON:0002619!1.48e-10!17;UBERON:0002021!1.90e-07!10;UBERON:0000411!1.90e-07!10;UBERON:0001950!1.90e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.42e-29,73;UBERON:0001016,5.94e-28,75;UBERON:0000073,1.27e-27,54;UBERON:0002346,5.95e-27,64;UBERON:0003075,5.95e-27,64;UBERON:0007284,5.95e-27,64;UBERON:0001049,3.15e-26,52;UBERON:0005068,3.15e-26,52;UBERON:0006241,3.15e-26,52;UBERON:0007135,3.15e-26,52;UBERON:0004121,8.29e-24,95;UBERON:0000924,8.29e-24,95;UBERON:0006601,8.29e-24,95;UBERON:0010371,2.24e-23,73;UBERON:0000955,8.68e-23,47;UBERON:0006238,8.68e-23,47;UBERON:0002616,2.38e-22,46;UBERON:0003056,3.73e-21,49;UBERON:0003080,4.16e-20,40;UBERON:0010314,4.64e-20,92;UBERON:0002020,4.86e-20,34;UBERON:0002780,1.40e-19,39;UBERON:0001890,1.40e-19,39;UBERON:0006240,1.40e-19,39;UBERON:0003528,9.41e-17,29;UBERON:0002791,9.41e-17,29;UBERON:0001893,9.41e-17,29;UBERON:0000956,3.18e-12,21;UBERON:0001869,3.18e-12,21;UBERON:0000203,3.18e-12,21;UBERON:0002619,1.48e-10,17;UBERON:0002021,1.90e-07,10;UBERON:0000411,1.90e-07,10;UBERON:0001950,1.90e-07,10 | |||
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| |||
|short_description=p1@Chchd6 | |||
}} |
Revision as of 10:55, 14 September 2013
Short description: | p1@Chchd6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Chchd6_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000168027_5end |
EntrezGene: | Chchd6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.25e-14 | 23 |
neuroblast (sensu Vertebrata) | 6.25e-14 | 23 |
ectodermal cell | 6.07e-13 | 44 |
neurectodermal cell | 6.07e-13 | 44 |
neural cell | 1.29e-12 | 43 |
neuron | 2.36e-10 | 33 |
neuronal stem cell | 2.36e-10 | 33 |
neuroblast | 2.36e-10 | 33 |
electrically signaling cell | 2.36e-10 | 33 |
electrically responsive cell | 7.50e-08 | 39 |
electrically active cell | 7.50e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.42e-29 | 73 |
nervous system | 5.94e-28 | 75 |
regional part of nervous system | 1.27e-27 | 54 |
neurectoderm | 5.95e-27 | 64 |
neural plate | 5.95e-27 | 64 |
presumptive neural plate | 5.95e-27 | 64 |
neural tube | 3.15e-26 | 52 |
neural rod | 3.15e-26 | 52 |
future spinal cord | 3.15e-26 | 52 |
neural keel | 3.15e-26 | 52 |
ectoderm-derived structure | 8.29e-24 | 95 |
ectoderm | 8.29e-24 | 95 |
presumptive ectoderm | 8.29e-24 | 95 |
ecto-epithelium | 2.24e-23 | 73 |
brain | 8.68e-23 | 47 |
future brain | 8.68e-23 | 47 |
regional part of brain | 2.38e-22 | 46 |
pre-chordal neural plate | 3.73e-21 | 49 |
anterior neural tube | 4.16e-20 | 40 |
structure with developmental contribution from neural crest | 4.64e-20 | 92 |
gray matter | 4.86e-20 | 34 |
regional part of forebrain | 1.40e-19 | 39 |
forebrain | 1.40e-19 | 39 |
future forebrain | 1.40e-19 | 39 |
brain grey matter | 9.41e-17 | 29 |
regional part of telencephalon | 9.41e-17 | 29 |
telencephalon | 9.41e-17 | 29 |
cerebral cortex | 3.18e-12 | 21 |
cerebral hemisphere | 3.18e-12 | 21 |
pallium | 3.18e-12 | 21 |
regional part of cerebral cortex | 1.48e-10 | 17 |
occipital lobe | 1.90e-07 | 10 |
visual cortex | 1.90e-07 | 10 |
neocortex | 1.90e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.