FFCP PHASE1:Hg19::chrX:131351405..131351424,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=57826|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=21165|TSSclassifier=S|UniProt=|association_with_transcript=65bp_to_uc004ewo.2_5end|description=CAGE_peak_8_at_RAP2C_5end|id=chrX:131351405..131351424,-|ontology_enrichment_celltype=CL:0000860!1.21e-18!45;CL:0002057!1.34e-18!42;CL:0000766!5.86e-16!76;CL:0002194!6.59e-16!63;CL:0000576!6.59e-16!63;CL:0000040!6.59e-16!63;CL:0000559!6.59e-16!63;CL:0002009!1.35e-15!65;CL:0000557!4.60e-14!71;CL:0000839!5.00e-14!70;CL:0000738!7.32e-12!140;CL:0002087!5.91e-11!119;CL:0002031!6.41e-10!124;CL:0000012!3.66e-08!682;CL:0000548!3.66e-08!679;CL:0000004!3.66e-08!679;CL:0000255!3.66e-08!679;CL:0000763!6.64e-08!112;CL:0000049!6.64e-08!112;CL:0000063!3.59e-07!578;CL:0000037!5.22e-07!172;CL:0000566!5.22e-07!172|ontology_enrichment_celltype_v019=CL:0000860;5.97e-18;33!CL:0002057;5.97e-18;33!CL:0000473;1.31e-14;39!CL:0000234;1.31e-14;39!CL:0000576;3.09e-14;48!CL:0000766;6.09e-10;69!CL:0000039;2.34e-09;7!CL:0000586;2.34e-09;7|ontology_enrichment_celltype_v019_2=CL:0000860,2.97e-27,42;CL:0002057,2.97e-27,42;CL:0000473,6.82e-26,48;CL:0000234,6.82e-26,48;CL:0002009,9.72e-20,61;CL:0002194,2.00e-19,59;CL:0000576,2.00e-19,59;CL:0000040,2.00e-19,59;CL:0000559,2.00e-19,59;CL:0000766,9.09e-19,72;CL:0000557,6.19e-17,67;CL:0000839,3.55e-16,66;CL:0000738,3.35e-12,136;CL:0002087,3.90e-11,115;CL:0000039,2.96e-10,7;CL:0000586,2.96e-10,7;CL:0002031,3.63e-10,120;CL:0000763,2.51e-09,108;CL:0000049,2.51e-09,108;CL:0002393,2.34e-08,9;CL:0002397,2.34e-08,9;CL:0000037,2.72e-07,168|ontology_enrichment_development_v019=CL:0002057;5.54e-19;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:5093;3.39e-07;4!DOID:1612;3.39e-07;4|ontology_enrichment_disease_v019_2=DOID:5093,3.81e-07,4;DOID:1612,3.81e-07,4|ontology_enrichment_uberon=UBERON:0002371!6.48e-11!80;UBERON:0001474!3.30e-10!86;UBERON:0004765!3.73e-10!101;UBERON:0001434!3.73e-10!101;UBERON:0002405!4.58e-10!115;UBERON:0002390!4.75e-10!102;UBERON:0003061!4.75e-10!102;UBERON:0002193!5.93e-10!112;UBERON:0002204!1.75e-07!167|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.32e-13,76;UBERON:0001474,7.75e-13,82;UBERON:0004765,2.98e-12,90;UBERON:0001434,1.20e-10,100;UBERON:0002405,1.86e-10,93;UBERON:0002390,3.71e-10,98;UBERON:0003061,3.71e-10,98;UBERON:0002193,2.45e-09,108;UBERON:0002204,4.84e-07,167|phase1_expression=0.54503513781167,0.214100523890983,0.563817616383885,1.0007329835313,0,0.872338524100369,2.53299878168311,0,0,0.737201809504527,0,0,0,0.495065411840187,0.662794751455832,0.672325146451775,1.20538905604795,0.730310090387373,0.487932798790507,0.246242116153576,0.204000691244253,0.626909442956176,0,0.136874425072884,0,0.382067028739756,0.57470412614962,0.236132343941038,0.786728553697808,0,2.01260960310899,0,0.6024118375565,0,0.387336002901508,0,0.293600439334847,4.43196326825502,3.00816671205213,1.51907609501096,0.895661896959697,0.647787332037959,1.03030227053675,0.726991193897824,0.755751887377619,1.69808842831471,1.62700325833979,0.822335776043652,1.23882548358041,2.01384674625505,1.0246428261164,1.41889337933151,2.41321976515633,1.93645405075148,1.35426486594342,1.88242339542605,1.36453075028923,3.37085226667627,4.59125838556354,3.20929027076094,4.47535988059329,1.31940520074686,0.598390972864896,1.70489900213078,6.96502172708602,3.97169657283798,6.22822248995575,0.75374599577023,0,0.868755378820466,7.26479403160043,4.78760926783834,10.7597211729901,1.05627643155971,1.70083439972035,0.838634582033504,1.57260083605093,0.901061357049038,1.12507910687956,1.71007646244749,1.39241674039363,1.27864907635244,0,0.546138611262131,1.77901850772711,0.426730222566507,0.400395987036012,0.574752439954483,0,1.90810750907073,0.569212969109448,0.587237189370939,0.764546456250458,0,1.12101712596307,0.263384084775077,1.180258620683,1.17903228824749,2.67281948699362,0,0.32592226663359,0,0,0,0.294605907474837,0.443067789167242,0.541607727530031,0.128091319725675,0.260118695119756,0.328875809207352,0.552700035571697,0,0.593146252648242,0,0,0.113309342697566,0.766440987203842,0.34362744548263,0.506039384039006,0,0,0,0.451725357233318,0.255973222308837,0,0.473554504088034,0,0.604820229674197,1.06976078313403,0.868946423296794,0,0.670700859703636,0.12786256184353,1.0843174571537,0.50133791063589,0.724232594804119,0.795285947051099,0,0.472674085820339,0.886917589850256,0.527008714158756,1.76821751921912,0,0,0.324547393654683,0.348259474598534,0.132957960518865,0.953962497221368,1.71598473234038,1.11437250398869,0,3.4409383804245,0,0,0.419499436209906,0.275118041940067,0.208994966536811,0.516833518338658,1.06729878806013,1.00416183829401,0,0,0.488124115096339,0.367663080345869,0,0.535798369704479,0.673588117878509,0.337834441449967,0,0,0.183201743930407,1.31780417436063,7.75560528296651,0,0,0.759783069987479,0.132409180813219,0.286836620748814,1.06400514659507,0,0,0.49333509683432,0,0.134710672069688,0.653847612453835,1.05950199351452,0.576175924479999,0.70296429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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=57826 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=21165 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=65bp_to_uc004ewo.2_5end | |||
|description=CAGE_peak_8_at_RAP2C_5end | |||
|id=chrX:131351405..131351424,- | |||
|ontology_enrichment_celltype=CL:0000860!1.21e-18!45;CL:0002057!1.34e-18!42;CL:0000766!5.86e-16!76;CL:0002194!6.59e-16!63;CL:0000576!6.59e-16!63;CL:0000040!6.59e-16!63;CL:0000559!6.59e-16!63;CL:0002009!1.35e-15!65;CL:0000557!4.60e-14!71;CL:0000839!5.00e-14!70;CL:0000738!7.32e-12!140;CL:0002087!5.91e-11!119;CL:0002031!6.41e-10!124;CL:0000012!3.66e-08!682;CL:0000548!3.66e-08!679;CL:0000004!3.66e-08!679;CL:0000255!3.66e-08!679;CL:0000763!6.64e-08!112;CL:0000049!6.64e-08!112;CL:0000063!3.59e-07!578;CL:0000037!5.22e-07!172;CL:0000566!5.22e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.97e-18;33!CL:0002057;5.97e-18;33!CL:0000473;1.31e-14;39!CL:0000234;1.31e-14;39!CL:0000576;3.09e-14;48!CL:0000766;6.09e-10;69!CL:0000039;2.34e-09;7!CL:0000586;2.34e-09;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.97e-27,42;CL:0002057,2.97e-27,42;CL:0000473,6.82e-26,48;CL:0000234,6.82e-26,48;CL:0002009,9.72e-20,61;CL:0002194,2.00e-19,59;CL:0000576,2.00e-19,59;CL:0000040,2.00e-19,59;CL:0000559,2.00e-19,59;CL:0000766,9.09e-19,72;CL:0000557,6.19e-17,67;CL:0000839,3.55e-16,66;CL:0000738,3.35e-12,136;CL:0002087,3.90e-11,115;CL:0000039,2.96e-10,7;CL:0000586,2.96e-10,7;CL:0002031,3.63e-10,120;CL:0000763,2.51e-09,108;CL:0000049,2.51e-09,108;CL:0002393,2.34e-08,9;CL:0002397,2.34e-08,9;CL:0000037,2.72e-07,168 | |||
|ontology_enrichment_development_v019=CL:0002057;5.54e-19;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5093;3.39e-07;4!DOID:1612;3.39e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,3.81e-07,4;DOID:1612,3.81e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0002371!6.48e-11!80;UBERON:0001474!3.30e-10!86;UBERON:0004765!3.73e-10!101;UBERON:0001434!3.73e-10!101;UBERON:0002405!4.58e-10!115;UBERON:0002390!4.75e-10!102;UBERON:0003061!4.75e-10!102;UBERON:0002193!5.93e-10!112;UBERON:0002204!1.75e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.32e-13,76;UBERON:0001474,7.75e-13,82;UBERON:0004765,2.98e-12,90;UBERON:0001434,1.20e-10,100;UBERON:0002405,1.86e-10,93;UBERON:0002390,3.71e-10,98;UBERON:0003061,3.71e-10,98;UBERON:0002193,2.45e-09,108;UBERON:0002204,4.84e-07,167 | |||
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| |||
|short_description=p8@RAP2C | |||
}} |
Revision as of 10:45, 14 September 2013
Short description: | p8@RAP2C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_RAP2C_5end |
Coexpression cluster: | NA |
Association with transcript: | 65bp_to_uc004ewo.2_5end |
EntrezGene: | RAP2C |
HGNC: | 21165 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.97e-27 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.97e-27 | 42 |
defensive cell | 6.82e-26 | 48 |
phagocyte | 6.82e-26 | 48 |
macrophage dendritic cell progenitor | 9.72e-20 | 61 |
monopoietic cell | 2.00e-19 | 59 |
monocyte | 2.00e-19 | 59 |
monoblast | 2.00e-19 | 59 |
promonocyte | 2.00e-19 | 59 |
myeloid leukocyte | 9.09e-19 | 72 |
granulocyte monocyte progenitor cell | 6.19e-17 | 67 |
myeloid lineage restricted progenitor cell | 3.55e-16 | 66 |
leukocyte | 3.35e-12 | 136 |
nongranular leukocyte | 3.90e-11 | 115 |
germ line cell | 2.96e-10 | 7 |
germ cell | 2.96e-10 | 7 |
hematopoietic lineage restricted progenitor cell | 3.63e-10 | 120 |
myeloid cell | 2.51e-09 | 108 |
common myeloid progenitor | 2.51e-09 | 108 |
intermediate monocyte | 2.34e-08 | 9 |
CD14-positive, CD16-positive monocyte | 2.34e-08 | 9 |
hematopoietic stem cell | 2.72e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.32e-13 | 76 |
bone element | 7.75e-13 | 82 |
skeletal element | 2.98e-12 | 90 |
skeletal system | 1.20e-10 | 100 |
immune system | 1.86e-10 | 93 |
hematopoietic system | 3.71e-10 | 98 |
blood island | 3.71e-10 | 98 |
hemolymphoid system | 2.45e-09 | 108 |
musculoskeletal system | 4.84e-07 | 167 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 3.81e-07 | 4 |
breast cancer | 3.81e-07 | 4 |
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