FFCP PHASE1:Hg19::chrX:107681486..107681503,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1288|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2208|TSSclassifier=S|UniProt=F5H3Q5,F5H851|association_with_transcript=52bp_to_ENST00000538570,ENST00000545689_5end|coexpression_cluster_id=C48|description=CAGE_peak_4_at_COL4A6_5end|id=chrX:107681486..107681503,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002195;8.48e-15;2!CL:0002571;8.48e-15;2|ontology_enrichment_celltype_v019_2=CL:0002195,1.04e-14,2;CL:0002571,1.04e-14,2|ontology_enrichment_development_v019=UBERON:0005795;4.37e-11;10!UBERON:0006242;1.77e-08;1!UBERON:0004874;2.27e-08;1!UBERON:0009143;3.57e-08;1!UBERON:0006603;2.42e-07;65|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060084;5.42e-21;3!DOID:127;5.42e-21;3!DOID:0060072;6.81e-16;4!DOID:3571;7.59e-08;1|ontology_enrichment_disease_v019_2=DOID:0060084,6.22e-21,3;DOID:127,6.22e-21,3;DOID:0060072,7.55e-16,4;DOID:3571,1.06e-07,1|ontology_enrichment_uberon=UBERON:0004119!1.36e-11!169;UBERON:0000925!1.36e-11!169;UBERON:0006595!1.36e-11!169;UBERON:0000922!2.82e-10!612;UBERON:0002050!2.20e-09!605;UBERON:0005423!2.20e-09!605;UBERON:0000468!2.30e-09!659;UBERON:0005156!3.91e-09!59;UBERON:0000990!3.91e-09!59;UBERON:0000923!5.90e-09!604;UBERON:0005291!5.90e-09!604;UBERON:0006598!5.90e-09!604;UBERON:0002532!5.90e-09!604;UBERON:0001007!1.01e-08!155;UBERON:0001555!1.01e-08!155;UBERON:0007026!1.01e-08!155;UBERON:0000467!3.04e-08!625;UBERON:0000481!3.44e-08!347;UBERON:0000480!3.61e-08!626;UBERON:0004921!7.67e-08!129;UBERON:0004185!7.67e-08!129;UBERON:0001046!3.65e-07!19;UBERON:0003100!5.03e-07!41;UBERON:0003133!5.34e-07!48;UBERON:0002530!9.39e-07!59|ontology_enrichment_uberon_v019=UBERON:0000989;2.27e-08;1!UBERON:0008811;2.27e-08;1!UBERON:0006834;3.57e-08;1!UBERON:0001301;3.57e-08;1!UBERON:0004175;6.36e-08;21!UBERON:0002135;7.59e-08;1|ontology_enrichment_uberon_v019_2=UBERON:0000989,2.19e-08,1;UBERON:0008811,2.19e-08,1;UBERON:0006258,2.19e-08,1;UBERON:0005876,2.19e-08,1;UBERON:0004874,2.19e-08,1;UBERON:0001301,3.58e-08,1;UBERON:0006834,4.11e-08,1;UBERON:0002135,5.79e-08,1;UBERON:0004119,1.71e-07,160;UBERON:0000925,1.71e-07,160;UBERON:0006595,1.71e-07,160|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0,0.436882744260345,0.527533956456907,0,0,0,0,0,0,0.246242116153576,0,0,0.572471974262113,0.273748850145768,0.251085279189606,0,0,0,0,0,0,0,0.6024118375565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.261958150995425,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0.506522046658319,0.529636723252875,0.573673241497627,0.354668382198357,0,0,0.24666754841716,0.622422070799533,0,0.326923806226917,0.302714855289863,1.15235184896,0.234321431833797,0,0,0,0,0,0,0.204154171254893,0,0.103325781175765,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0.929551542956147,0.518305275076852,0.252320850875628,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0,0,0,0,0.277765335475589,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0.447792613514241,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,4.00338382242813,0.542621605391443,0.823240336780769,0,2.13235169245527,0,0.904318131178758,0.871533458600294,2.29937879718731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0.356857977594324,0.315404830067869,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0,0.802025881213139,0,0.803701137152247,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0.0852266274161009,0,0.826424576804891,1.92190067365106,3.31793052485919,1.31505115112215,0,1.5740617341532,0.6970372701606,0,0,0.869932992075073,0.18532421910392,0.286249773483982,0,0.632758849437452,0,0,0,0.636406495851874,0,0.179872457583315,0,0.353437207037059,0.404364963146632,0,0,0,0.974853958525138,1.05650146756755,0.272999822815972,0.848432591722276,0,0.551365343546124,0,0.438450885253763,0,0,0.202910376962704,0,0,0,0,0.35667105148125,0,0,0,0,0,0.288666338176536,0.670302275535787,0,0.0941438007767792,1.29151611801369,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.47748896947538,0,0.307160702099232,0,0,0.111308705022906,0,0,1.19548792950642,0.276283915531148,0,0.102268682502155,0,0,0,0,0,12.4290691102536,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.461701551022782,0,0,0,0,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0,0,0.706765357169704,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0.19566461893209,0,0.394584402849391,1.20990716048664,0,0.063186579628488,0.751617097072463,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1288 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2208 | |||
|TSSclassifier=S | |||
|UniProt=F5H3Q5,F5H851 | |||
|association_with_transcript=52bp_to_ENST00000538570,ENST00000545689_5end | |||
|coexpression_cluster_id=C48 | |||
|description=CAGE_peak_4_at_COL4A6_5end | |||
|id=chrX:107681486..107681503,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002195;8.48e-15;2!CL:0002571;8.48e-15;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002195,1.04e-14,2;CL:0002571,1.04e-14,2 | |||
|ontology_enrichment_development_v019=UBERON:0005795;4.37e-11;10!UBERON:0006242;1.77e-08;1!UBERON:0004874;2.27e-08;1!UBERON:0009143;3.57e-08;1!UBERON:0006603;2.42e-07;65 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;5.42e-21;3!DOID:127;5.42e-21;3!DOID:0060072;6.81e-16;4!DOID:3571;7.59e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,6.22e-21,3;DOID:127,6.22e-21,3;DOID:0060072,7.55e-16,4;DOID:3571,1.06e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.36e-11!169;UBERON:0000925!1.36e-11!169;UBERON:0006595!1.36e-11!169;UBERON:0000922!2.82e-10!612;UBERON:0002050!2.20e-09!605;UBERON:0005423!2.20e-09!605;UBERON:0000468!2.30e-09!659;UBERON:0005156!3.91e-09!59;UBERON:0000990!3.91e-09!59;UBERON:0000923!5.90e-09!604;UBERON:0005291!5.90e-09!604;UBERON:0006598!5.90e-09!604;UBERON:0002532!5.90e-09!604;UBERON:0001007!1.01e-08!155;UBERON:0001555!1.01e-08!155;UBERON:0007026!1.01e-08!155;UBERON:0000467!3.04e-08!625;UBERON:0000481!3.44e-08!347;UBERON:0000480!3.61e-08!626;UBERON:0004921!7.67e-08!129;UBERON:0004185!7.67e-08!129;UBERON:0001046!3.65e-07!19;UBERON:0003100!5.03e-07!41;UBERON:0003133!5.34e-07!48;UBERON:0002530!9.39e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0000989;2.27e-08;1!UBERON:0008811;2.27e-08;1!UBERON:0006834;3.57e-08;1!UBERON:0001301;3.57e-08;1!UBERON:0004175;6.36e-08;21!UBERON:0002135;7.59e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000989,2.19e-08,1;UBERON:0008811,2.19e-08,1;UBERON:0006258,2.19e-08,1;UBERON:0005876,2.19e-08,1;UBERON:0004874,2.19e-08,1;UBERON:0001301,3.58e-08,1;UBERON:0006834,4.11e-08,1;UBERON:0002135,5.79e-08,1;UBERON:0004119,1.71e-07,160;UBERON:0000925,1.71e-07,160;UBERON:0006595,1.71e-07,160 | |||
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|short_description=p4@COL4A6 | |||
}} |
Revision as of 10:22, 14 September 2013
Short description: | p4@COL4A6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_COL4A6_5end |
Coexpression cluster: | C48_smooth_bladder_esophagus_colon_penis_aorta_uterus |
Association with transcript: | 52bp_to_ENST00000538570, ENST00000545689_5end |
EntrezGene: | COL4A6 |
HGNC: | 2208 |
UniProt: | F5H3Q5F5H851 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatic stem cell | 1.04e-14 | 2 |
hepatic mesenchymal stem cell | 1.04e-14 | 2 |
Ontology term | p-value | n |
---|---|---|
penis | 2.19e-08 | 1 |
intromittent organ | 2.19e-08 | 1 |
lateral plate mesenchyme | 2.19e-08 | 1 |
undifferentiated genital tubercle | 2.19e-08 | 1 |
somatopleure | 2.19e-08 | 1 |
epididymis | 3.58e-08 | 1 |
uterus or analog | 4.11e-08 | 1 |
mitral valve | 5.79e-08 | 1 |
endoderm-derived structure | 1.71e-07 | 160 |
endoderm | 1.71e-07 | 160 |
presumptive endoderm | 1.71e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 6.22e-21 | 3 |
leiomyoma | 6.22e-21 | 3 |
benign neoplasm | 7.55e-16 | 4 |
liver cancer | 1.06e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.