FFCP PHASE1:Mm9::chr6:4853298..4853346,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=243725|HGNC=|MCL_coexpression_id=2|UniProt=Q7TN74|association_with_transcript=0bp_to_ENSMUST00000035813,NM_181595,uc009avy.1,uc009avz.1_5end|description=CAGE_peak_2_at_Ppp1r9a_5end|id=chr6:4853298..4853346,+|ontology_enrichment_celltype=CL:0000117!1.98e-08!23;CL:0000337!1.98e-08!23|ontology_enrichment_celltype_v019_2=CL:0000117,4.70e-09,23;CL:0000337,4.70e-09,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!8.79e-20!71;UBERON:0003075!8.79e-20!71;UBERON:0007284!8.79e-20!71;UBERON:0001049!9.23e-18!52;UBERON:0005068!9.23e-18!52;UBERON:0006241!9.23e-18!52;UBERON:0007135!9.23e-18!52;UBERON:0000033!3.89e-17!63;UBERON:0000955!4.85e-17!50;UBERON:0006238!4.85e-17!50;UBERON:0002616!2.03e-16!49;UBERON:0001017!4.95e-16!73;UBERON:0005743!4.95e-16!73;UBERON:0003056!9.66e-16!49;UBERON:0000073!4.39e-15!75;UBERON:0001016!4.39e-15!75;UBERON:0004121!4.54e-15!102;UBERON:0000924!4.54e-15!102;UBERON:0006601!4.54e-15!102;UBERON:0002020!5.85e-14!34;UBERON:0003080!7.12e-14!40;UBERON:0002780!2.67e-13!39;UBERON:0001890!2.67e-13!39;UBERON:0006240!2.67e-13!39;UBERON:0002791!1.57e-11!29;UBERON:0003528!1.57e-11!29;UBERON:0001893!1.57e-11!29;UBERON:0000468!2.75e-08!333;UBERON:0002021!4.68e-08!10;UBERON:0000411!4.68e-08!10;UBERON:0001950!4.68e-08!10;UBERON:0000956!1.59e-07!21;UBERON:0001869!1.59e-07!21;UBERON:0000203!1.59e-07!21;UBERON:0002619!2.02e-07!17;UBERON:0000153!4.08e-07!94;UBERON:0000025!8.78e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.96e-20,54;UBERON:0002346,3.27e-19,64;UBERON:0003075,3.27e-19,64;UBERON:0007284,3.27e-19,64;UBERON:0001049,1.48e-18,52;UBERON:0005068,1.48e-18,52;UBERON:0006241,1.48e-18,52;UBERON:0007135,1.48e-18,52;UBERON:0003056,1.47e-16,49;UBERON:0001017,6.84e-16,73;UBERON:0000955,6.98e-16,47;UBERON:0006238,6.98e-16,47;UBERON:0002616,3.12e-15,46;UBERON:0001016,9.86e-15,75;UBERON:0010371,1.30e-14,73;UBERON:0002020,1.44e-14,34;UBERON:0003080,1.64e-14,40;UBERON:0002780,6.83e-14,39;UBERON:0001890,6.83e-14,39;UBERON:0006240,6.83e-14,39;UBERON:0010314,4.46e-13,92;UBERON:0004121,1.27e-12,95;UBERON:0000924,1.27e-12,95;UBERON:0006601,1.27e-12,95;UBERON:0003528,6.15e-12,29;UBERON:0002791,6.15e-12,29;UBERON:0001893,6.15e-12,29;UBERON:0002021,1.20e-08,10;UBERON:0000411,1.20e-08,10;UBERON:0001950,1.20e-08,10;UBERON:0000956,1.28e-07,21;UBERON:0001869,1.28e-07,21;UBERON:0000203,1.28e-07,21;UBERON:0002619,1.83e-07,17|phase1_expression=0.480446541314382,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0.699561878128147,0,0,0.42438965179803,7.65389611359628,0,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0.498703936075477,0.408338712524738,0,0,0.523523743973798,0,0,0.485510353031154,0.251793635951155,0.202753862439029,0,0,0.872100625521786,0.659058548203415,0.388859798148567,0.139986421625363,0,0,0,0,0.514518872071894,0.573066879877513,0,5.46254444320914,6.34789175126439,2.53532561402472,0,0,0,0.988866362566974,0.7104801149461,0.299600110518405,0,2.07379224616955,1.21505344498522,1.68259969081106,4.57041575046086,5.96345060569357,3.55223317723367,2.30029130443767,1.83843757322004,9.91042928994498,14.300981865541,12.7493422602682,4.48413378282659,5.12330804173494,7.8137005583514,8.37548997004143,11.8180148106653,10.8486755921535,9.42811473515737,7.97281412474976,10.4383689662168,0.454357159999104,0.151143120213571,2.02905142091174,0,0,0,0,0,1.40444420131752,0,0,0,2.25349471642689,0,0,0,0.216491041011214,0,0,1.25602267690966,0,2.67195850316685,3.12273588179045,1.52232739156071,2.53677046981664,2.41156224884196,3.99801604261396,2.38766523526383,0.988779870937496,1.01219549843938,0,3.72063754879041,1.10420759230197,0,0,9.9545470983926,7.33063473847093,0,0.239630249011841,0,0,12.5824137100051,62.2200819833332,17.4659549436882,43.9775530086459,52.6773842100481,15.7918913865266,32.9349764027548,3.05518091550949,0.746441823660558,0.252722758433675,1.47309299120532,1.95180664444056,1.60931473103431,3.42118046630164,3.91832526372859,6.46346741937615,4.48398020996974,5.05989312622536,5.43277078551933,1.07783996466421,3.78212160335639,4.39877810409872,2.6303487891309,5.00485048606076,2.43776516565517,2.88094990971121,5.57295947091781,0,0.257347907114715,0,1.24275463521301,2.11073453982987,1.44049649168812,0.710234206755631,1.96764231747404,1.3884040159864,0.465067889500816,1.87791380979733,0.817357396570186,1.81015834904829,1.31333971263276,0.810688095458557,0.877199924551994,0.439100230582101,0.671032093801859,29.2303028504137,9.2614151141356,0,0,3.41261200856374,2.32236671860439,1.9330119198314,2.01683524623343,0.667134131534611,0.760902504450237,0,0.658795818896044,1.00534083520108,1.39269530428806,0.779856348476481,0,0,0.199141273254367,0.758671603812327,1.37098215131675,1.1270773567308,2.44381593414377,1.55161989734101,2.73529697572242,1.70738650235495,0.738050739898011,0.784993639206874,0.863780147452604,0.296452627087149,0.333690211432188,1.96558995113203,0.224862112384854,0,0.72353147925725,0.50925170356284,0.575392274901621,0.648540907100142,0,2.875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| ||
|EntrezGene=243725 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt=Q7TN74 | |||
|association_with_transcript=0bp_to_ENSMUST00000035813,NM_181595,uc009avy.1,uc009avz.1_5end | |||
|description=CAGE_peak_2_at_Ppp1r9a_5end | |||
|id=chr6:4853298..4853346,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.98e-08!23;CL:0000337!1.98e-08!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.70e-09,23;CL:0000337,4.70e-09,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!8.79e-20!71;UBERON:0003075!8.79e-20!71;UBERON:0007284!8.79e-20!71;UBERON:0001049!9.23e-18!52;UBERON:0005068!9.23e-18!52;UBERON:0006241!9.23e-18!52;UBERON:0007135!9.23e-18!52;UBERON:0000033!3.89e-17!63;UBERON:0000955!4.85e-17!50;UBERON:0006238!4.85e-17!50;UBERON:0002616!2.03e-16!49;UBERON:0001017!4.95e-16!73;UBERON:0005743!4.95e-16!73;UBERON:0003056!9.66e-16!49;UBERON:0000073!4.39e-15!75;UBERON:0001016!4.39e-15!75;UBERON:0004121!4.54e-15!102;UBERON:0000924!4.54e-15!102;UBERON:0006601!4.54e-15!102;UBERON:0002020!5.85e-14!34;UBERON:0003080!7.12e-14!40;UBERON:0002780!2.67e-13!39;UBERON:0001890!2.67e-13!39;UBERON:0006240!2.67e-13!39;UBERON:0002791!1.57e-11!29;UBERON:0003528!1.57e-11!29;UBERON:0001893!1.57e-11!29;UBERON:0000468!2.75e-08!333;UBERON:0002021!4.68e-08!10;UBERON:0000411!4.68e-08!10;UBERON:0001950!4.68e-08!10;UBERON:0000956!1.59e-07!21;UBERON:0001869!1.59e-07!21;UBERON:0000203!1.59e-07!21;UBERON:0002619!2.02e-07!17;UBERON:0000153!4.08e-07!94;UBERON:0000025!8.78e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.96e-20,54;UBERON:0002346,3.27e-19,64;UBERON:0003075,3.27e-19,64;UBERON:0007284,3.27e-19,64;UBERON:0001049,1.48e-18,52;UBERON:0005068,1.48e-18,52;UBERON:0006241,1.48e-18,52;UBERON:0007135,1.48e-18,52;UBERON:0003056,1.47e-16,49;UBERON:0001017,6.84e-16,73;UBERON:0000955,6.98e-16,47;UBERON:0006238,6.98e-16,47;UBERON:0002616,3.12e-15,46;UBERON:0001016,9.86e-15,75;UBERON:0010371,1.30e-14,73;UBERON:0002020,1.44e-14,34;UBERON:0003080,1.64e-14,40;UBERON:0002780,6.83e-14,39;UBERON:0001890,6.83e-14,39;UBERON:0006240,6.83e-14,39;UBERON:0010314,4.46e-13,92;UBERON:0004121,1.27e-12,95;UBERON:0000924,1.27e-12,95;UBERON:0006601,1.27e-12,95;UBERON:0003528,6.15e-12,29;UBERON:0002791,6.15e-12,29;UBERON:0001893,6.15e-12,29;UBERON:0002021,1.20e-08,10;UBERON:0000411,1.20e-08,10;UBERON:0001950,1.20e-08,10;UBERON:0000956,1.28e-07,21;UBERON:0001869,1.28e-07,21;UBERON:0000203,1.28e-07,21;UBERON:0002619,1.83e-07,17 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0.699561878128147,0,0,0.42438965179803,7.65389611359628,0,0,0,0,0,0,0,0,0,0.221730510655305,0,0,0,0,0.498703936075477,0.408338712524738,0,0,0.523523743973798,0,0,0.485510353031154,0.251793635951155,0.202753862439029,0,0,0.872100625521786,0.659058548203415,0.388859798148567,0.139986421625363,0,0,0,0,0.514518872071894,0.573066879877513,0,5.46254444320914,6.34789175126439,2.53532561402472,0,0,0,0.988866362566974,0.7104801149461,0.299600110518405,0,2.07379224616955,1.21505344498522,1.68259969081106,4.57041575046086,5.96345060569357,3.55223317723367,2.30029130443767,1.83843757322004,9.91042928994498,14.300981865541,12.7493422602682,4.48413378282659,5.12330804173494,7.8137005583514,8.37548997004143,11.8180148106653,10.8486755921535,9.42811473515737,7.97281412474976,10.4383689662168,0.454357159999104,0.151143120213571,2.02905142091174,0,0,0,0,0,1.40444420131752,0,0,0,2.25349471642689,0,0,0,0.216491041011214,0,0,1.25602267690966,0,2.67195850316685,3.12273588179045,1.52232739156071,2.53677046981664,2.41156224884196,3.99801604261396,2.38766523526383,0.988779870937496,1.01219549843938,0,3.72063754879041,1.10420759230197,0,0,9.9545470983926,7.33063473847093,0,0.239630249011841,0,0,12.5824137100051,62.2200819833332,17.4659549436882,43.9775530086459,52.6773842100481,15.7918913865266,32.9349764027548,3.05518091550949,0.746441823660558,0.252722758433675,1.47309299120532,1.95180664444056,1.60931473103431,3.42118046630164,3.91832526372859,6.46346741937615,4.48398020996974,5.05989312622536,5.43277078551933,1.07783996466421,3.78212160335639,4.39877810409872,2.6303487891309,5.00485048606076,2.43776516565517,2.88094990971121,5.57295947091781,0,0.257347907114715,0,1.24275463521301,2.11073453982987,1.44049649168812,0.710234206755631,1.96764231747404,1.3884040159864,0.465067889500816,1.87791380979733,0.817357396570186,1.81015834904829,1.31333971263276,0.810688095458557,0.877199924551994,0.439100230582101,0.671032093801859,29.2303028504137,9.2614151141356,0,0,3.41261200856374,2.32236671860439,1.9330119198314,2.01683524623343,0.667134131534611,0.760902504450237,0,0.658795818896044,1.00534083520108,1.39269530428806,0.779856348476481,0,0,0.199141273254367,0.758671603812327,1.37098215131675,1.1270773567308,2.44381593414377,1.55161989734101,2.73529697572242,1.70738650235495,0.738050739898011,0.784993639206874,0.863780147452604,0.296452627087149,0.333690211432188,1.96558995113203,0.224862112384854,0,0.72353147925725,0.50925170356284,0.575392274901621,0.648540907100142,0,2.87536413054709,1.48856379067401,0.312037673114561,1.01031551178845,1.07638448113147,0,1.84753190166605,1.51593129416388,1.95557971730431,1.35796068620151,2.11221223459652,2.34508760418542,1.90434912708811,1.56106918286239,3.78324345854858,3.10050565508285,2.71073106717728,2.45794972073607,1.72684981865896,1.59113964439663,0,0,0,0.827810238914197,10.2752377592187,12.1900154055891,0,0.757412781613119,0.94652465824877,0.390438744296638,1.93881057959519,1.43381278771531,1.78238939265915,2.83076530788832,2.02405350837447,0.292255857911312,0.790575555893047,16.0660658210904,3.54850213020672,1.6025904330053,5.53815661802159,2.47455184458803,0,1.45668381692989,2.41858845571801,1.69744571780308,1.18120757152309,4.30409207121498,3.35956781118687,0.363533729477506,1.42598951353889,1.58018378967908,0,0,3.06395645178409,3.42116078659489,1.94038025674132,1.50035924522115,3.01478397191865,3.21063871683727,2.79733335023606,2.43571959291679,0.23467170806371,1.48282449604674,0.882113592219848,0.16488625294148,1.45317984026315,0.965006798850494,0.477489376012546,0.492422699235184,0.291480836629851,10.198391610578,0,1.857481811669,1.85194527369712,0.565105371014073,0.410082683163076,0,1.01987057996313,2.37917468950219,0.552799895217695,0.954670618015114,1.89801596148681,1.82987520414164,1.51207477150522,1.04544148007234,0.218362563746178,2.02296519577231,2.14898984885873,0.785267825952089,0.648074866458964,0,3.94585057078933,5.38259565758324,2.48187735685646,5.25018208528929,3.35815541042101,4.56181538825101,6.33729088687071,7.68205870579306,13.1074180532139,9.18019659138823,5.18454011264158,0.632022241256357,1.41907650703115,1.43795340030758,0.25984164595559,0.716106782669926,0.198681354781265,0,0,0.100966449948148,0.228620419965,0.201652370273681,0.0974578807397524,0.0962118416403295,0,0.453460767230423,0.221985953374065,0.0897138566094757,0.167884616364078,1.35232715822533,0.93841237725591,1.46521299413812,0,0,29.9318476587045,36.365693684067,31.5092532391668,34.0269301040501,43.1601987455505,42.3020582538232,37.8012600129811,31.0721630224712,43.5016712624836,46.080667745912,0.415149390336707,5.58634822761443,3.24393850932855,4.61902762429759,1.67690530102386,2.75765262675021,3.11145418922261,3.29656091582231,3.20919209591815,3.28506375292937,2.28131369901216,5.28153755881013,3.27745276144588,3.90553429669703,4.07791829584854,2.85776214769844,4.51948871184936,5.20854895252004,4.94503080963968,3.679973003359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| |||
|short_description=p2@Ppp1r9a | |||
}} |
Revision as of 10:06, 14 September 2013
Short description: | p2@Ppp1r9a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ppp1r9a_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 0bp_to_ENSMUST00000035813, NM_181595, uc009avy.1, uc009avz.1_5end |
EntrezGene: | Ppp1r9a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.70e-09 | 23 |
neuroblast (sensu Vertebrata) | 4.70e-09 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 6.96e-20 | 54 |
neurectoderm | 3.27e-19 | 64 |
neural plate | 3.27e-19 | 64 |
presumptive neural plate | 3.27e-19 | 64 |
neural tube | 1.48e-18 | 52 |
neural rod | 1.48e-18 | 52 |
future spinal cord | 1.48e-18 | 52 |
neural keel | 1.48e-18 | 52 |
pre-chordal neural plate | 1.47e-16 | 49 |
central nervous system | 6.84e-16 | 73 |
brain | 6.98e-16 | 47 |
future brain | 6.98e-16 | 47 |
regional part of brain | 3.12e-15 | 46 |
nervous system | 9.86e-15 | 75 |
ecto-epithelium | 1.30e-14 | 73 |
gray matter | 1.44e-14 | 34 |
anterior neural tube | 1.64e-14 | 40 |
regional part of forebrain | 6.83e-14 | 39 |
forebrain | 6.83e-14 | 39 |
future forebrain | 6.83e-14 | 39 |
structure with developmental contribution from neural crest | 4.46e-13 | 92 |
ectoderm-derived structure | 1.27e-12 | 95 |
ectoderm | 1.27e-12 | 95 |
presumptive ectoderm | 1.27e-12 | 95 |
brain grey matter | 6.15e-12 | 29 |
regional part of telencephalon | 6.15e-12 | 29 |
telencephalon | 6.15e-12 | 29 |
occipital lobe | 1.20e-08 | 10 |
visual cortex | 1.20e-08 | 10 |
neocortex | 1.20e-08 | 10 |
cerebral cortex | 1.28e-07 | 21 |
cerebral hemisphere | 1.28e-07 | 21 |
pallium | 1.28e-07 | 21 |
regional part of cerebral cortex | 1.83e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.