FFCP PHASE1:Mm9::chr6:48345690..48345712,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=77827|HGNC=|MCL_coexpression_id=1946|UniProt=|association_with_transcript=0bp_to_ENSMUST00000127980_5end|description=CAGE_peak_3_at_Krba1_5end|id=chr6:48345690..48345712,+|ontology_enrichment_celltype=CL:0000540!1.36e-08!33;CL:0000047!1.36e-08!33;CL:0000031!1.36e-08!33;CL:0000404!1.36e-08!33;CL:0000221!4.43e-07!44;CL:0000133!4.43e-07!44|ontology_enrichment_celltype_v019_2=CL:0000540,5.32e-09,33;CL:0000047,5.32e-09,33;CL:0000031,5.32e-09,33;CL:0000404,5.32e-09,33;CL:0000221,3.28e-07,44;CL:0000133,3.28e-07,44;CL:0002319,8.34e-07,43;CL:0000117,8.91e-07,23;CL:0000337,8.91e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!3.42e-18!71;UBERON:0003075!3.42e-18!71;UBERON:0007284!3.42e-18!71;UBERON:0000153!2.78e-16!94;UBERON:0001017!6.31e-16!73;UBERON:0005743!6.31e-16!73;UBERON:0004121!5.24e-15!102;UBERON:0000924!5.24e-15!102;UBERON:0006601!5.24e-15!102;UBERON:0007811!5.34e-15!86;UBERON:0000073!7.66e-15!75;UBERON:0001016!7.66e-15!75;UBERON:0003056!1.09e-14!49;UBERON:0001049!7.29e-14!52;UBERON:0005068!7.29e-14!52;UBERON:0006241!7.29e-14!52;UBERON:0007135!7.29e-14!52;UBERON:0000033!7.57e-14!63;UBERON:0003080!1.75e-11!40;UBERON:0002780!3.42e-11!39;UBERON:0001890!3.42e-11!39;UBERON:0006240!3.42e-11!39;UBERON:0002020!3.81e-11!34;UBERON:0000955!1.50e-10!50;UBERON:0006238!1.50e-10!50;UBERON:0002616!3.40e-10!49;UBERON:0002791!8.18e-09!29;UBERON:0003528!8.18e-09!29;UBERON:0001893!8.18e-09!29;UBERON:0000468!2.66e-08!333;UBERON:0000922!4.31e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.40e-19,92;UBERON:0002346,8.31e-19,64;UBERON:0003075,8.31e-19,64;UBERON:0007284,8.31e-19,64;UBERON:0001017,1.36e-16,73;UBERON:0010371,4.62e-16,73;UBERON:0001016,3.15e-15,75;UBERON:0003056,3.79e-15,49;UBERON:0004121,8.93e-15,95;UBERON:0000924,8.93e-15,95;UBERON:0006601,8.93e-15,95;UBERON:0001049,2.72e-14,52;UBERON:0005068,2.72e-14,52;UBERON:0006241,2.72e-14,52;UBERON:0007135,2.72e-14,52;UBERON:0000073,5.31e-13,54;UBERON:0000955,3.36e-12,47;UBERON:0006238,3.36e-12,47;UBERON:0003080,7.91e-12,40;UBERON:0002616,8.09e-12,46;UBERON:0002780,1.58e-11,39;UBERON:0001890,1.58e-11,39;UBERON:0006240,1.58e-11,39;UBERON:0002020,1.77e-11,34;UBERON:0003528,4.57e-09,29;UBERON:0002791,4.57e-09,29;UBERON:0001893,4.57e-09,29;UBERON:0000922,2.79e-07,320;UBERON:0000956,6.66e-07,21;UBERON:0001869,6.66e-07,21;UBERON:0000203,6.66e-07,21|phase1_expression=5.12476310735341,0,0.454999239389536,0.30246421130683,0,0.33575854382378,0.467225281191051,2.96983643915625,4.08287294239834,3.97909694747389,0.856089841127525,0.957265907944037,3.59521532855532,2.71003247498892,0,0.202475267389826,0,1.26184866143295,1.23402990245165,0.42438965179803,3.23164502574065,0,0,0.47997726838022,0,0,0,0,0.380046838912748,0.504060259519861,0.665191531965914,0,0,0,0.288851619751275,0.166234645358492,0.204169356262369,0,0,0,0,0,0,1.00717454380462,0.608261587317087,0.734187008646726,3.9119567217402,1.74420125104357,1.5378032791413,2.13872888981712,1.81982348112971,1.43752564364972,0.671130424230945,2.17608642603403,2.01656279485478,0,0.85960031981627,2.06268836910977,6.47412674750713,4.7609188134483,3.80298842103708,1.0165335962074,0.889294796111139,0,0,1.4209602298922,1.19840044207362,2.68952813725088,4.76972216618997,7.02030879324791,3.57552434297349,4.57041575046086,5.07997644188711,4.65465037016825,6.13411014516713,3.67687514644008,0,2.17068474744819,1.22885226604995,6.3305418110493,5.58074625974699,6.25096044668112,1.11673199600552,1.68828783009504,3.36156145108982,5.00868595305235,5.55249555116501,6.89677949553612,0.37863096666592,0.755715601067855,0.579728977403356,0,0,0,0.649776417447669,0.896053774194671,0.421333260395256,0,0,0,5.35204995151386,0,0,0,0.865964164044856,0.253359865475099,0,0.91347103775248,0.517875767294343,1.33597925158342,3.64319186208885,3.65358573974569,1.61430848079241,2.56228488939458,3.88042733547826,1.75933227861546,0.494389935468748,1.01219549843938,1.76922110389975,1.61766849947409,0.441683036920787,0.969750506270444,0,2.04946557908083,3.56059401582874,0,0.239630249011841,0,0.254140454146129,3.89455662452539,5.49000723382352,8.41884159156192,2.60736480288415,3.83573185995496,2.28566849015516,4.05603157669394,3.05518091550949,1.61729061793121,1.0108910337347,1.05220927943237,3.3831315170303,3.67843367093557,5.04173963454978,4.82255417074288,8.16437989815934,7.04625461566674,6.8402258928602,5.69147415625834,4.95806383745537,5.8622884852024,5.45448484908241,4.3839146485515,3.89266148915837,1.0447564995665,2.05782136407943,5.37392520409932,0,0.257347907114715,0.568326998791185,5.17814431338755,3.98694301967864,1.98068267607116,4.02466050494857,2.75469924446365,3.23960937063494,4.88321283975857,1.60964040839772,3.85325629811659,5.10135534731789,2.29834449710733,2.59420190546738,1.75439984910399,1.3173006917463,1.34206418760372,4.41608891984667,9.36431972651488,0,0.264450566663544,5.54549451391608,3.0190767341857,2.06187938115349,1.21010114774006,2.2237804384487,0.570676878337677,0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| ||
|EntrezGene=77827 | |||
|HGNC= | |||
|MCL_coexpression_id=1946 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000127980_5end | |||
|description=CAGE_peak_3_at_Krba1_5end | |||
|id=chr6:48345690..48345712,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.36e-08!33;CL:0000047!1.36e-08!33;CL:0000031!1.36e-08!33;CL:0000404!1.36e-08!33;CL:0000221!4.43e-07!44;CL:0000133!4.43e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.32e-09,33;CL:0000047,5.32e-09,33;CL:0000031,5.32e-09,33;CL:0000404,5.32e-09,33;CL:0000221,3.28e-07,44;CL:0000133,3.28e-07,44;CL:0002319,8.34e-07,43;CL:0000117,8.91e-07,23;CL:0000337,8.91e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!3.42e-18!71;UBERON:0003075!3.42e-18!71;UBERON:0007284!3.42e-18!71;UBERON:0000153!2.78e-16!94;UBERON:0001017!6.31e-16!73;UBERON:0005743!6.31e-16!73;UBERON:0004121!5.24e-15!102;UBERON:0000924!5.24e-15!102;UBERON:0006601!5.24e-15!102;UBERON:0007811!5.34e-15!86;UBERON:0000073!7.66e-15!75;UBERON:0001016!7.66e-15!75;UBERON:0003056!1.09e-14!49;UBERON:0001049!7.29e-14!52;UBERON:0005068!7.29e-14!52;UBERON:0006241!7.29e-14!52;UBERON:0007135!7.29e-14!52;UBERON:0000033!7.57e-14!63;UBERON:0003080!1.75e-11!40;UBERON:0002780!3.42e-11!39;UBERON:0001890!3.42e-11!39;UBERON:0006240!3.42e-11!39;UBERON:0002020!3.81e-11!34;UBERON:0000955!1.50e-10!50;UBERON:0006238!1.50e-10!50;UBERON:0002616!3.40e-10!49;UBERON:0002791!8.18e-09!29;UBERON:0003528!8.18e-09!29;UBERON:0001893!8.18e-09!29;UBERON:0000468!2.66e-08!333;UBERON:0000922!4.31e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.40e-19,92;UBERON:0002346,8.31e-19,64;UBERON:0003075,8.31e-19,64;UBERON:0007284,8.31e-19,64;UBERON:0001017,1.36e-16,73;UBERON:0010371,4.62e-16,73;UBERON:0001016,3.15e-15,75;UBERON:0003056,3.79e-15,49;UBERON:0004121,8.93e-15,95;UBERON:0000924,8.93e-15,95;UBERON:0006601,8.93e-15,95;UBERON:0001049,2.72e-14,52;UBERON:0005068,2.72e-14,52;UBERON:0006241,2.72e-14,52;UBERON:0007135,2.72e-14,52;UBERON:0000073,5.31e-13,54;UBERON:0000955,3.36e-12,47;UBERON:0006238,3.36e-12,47;UBERON:0003080,7.91e-12,40;UBERON:0002616,8.09e-12,46;UBERON:0002780,1.58e-11,39;UBERON:0001890,1.58e-11,39;UBERON:0006240,1.58e-11,39;UBERON:0002020,1.77e-11,34;UBERON:0003528,4.57e-09,29;UBERON:0002791,4.57e-09,29;UBERON:0001893,4.57e-09,29;UBERON:0000922,2.79e-07,320;UBERON:0000956,6.66e-07,21;UBERON:0001869,6.66e-07,21;UBERON:0000203,6.66e-07,21 | |||
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| |||
|short_description=p3@Krba1 | |||
}} |
Revision as of 10:05, 14 September 2013
Short description: | p3@Krba1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Krba1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1946 |
Association with transcript: | 0bp_to_ENSMUST00000127980_5end |
EntrezGene: | Krba1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.32e-09 | 33 |
neuronal stem cell | 5.32e-09 | 33 |
neuroblast | 5.32e-09 | 33 |
electrically signaling cell | 5.32e-09 | 33 |
ectodermal cell | 3.28e-07 | 44 |
neurectodermal cell | 3.28e-07 | 44 |
neural cell | 8.34e-07 | 43 |
CNS neuron (sensu Vertebrata) | 8.91e-07 | 23 |
neuroblast (sensu Vertebrata) | 8.91e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.40e-19 | 92 |
neurectoderm | 8.31e-19 | 64 |
neural plate | 8.31e-19 | 64 |
presumptive neural plate | 8.31e-19 | 64 |
central nervous system | 1.36e-16 | 73 |
ecto-epithelium | 4.62e-16 | 73 |
nervous system | 3.15e-15 | 75 |
pre-chordal neural plate | 3.79e-15 | 49 |
ectoderm-derived structure | 8.93e-15 | 95 |
ectoderm | 8.93e-15 | 95 |
presumptive ectoderm | 8.93e-15 | 95 |
neural tube | 2.72e-14 | 52 |
neural rod | 2.72e-14 | 52 |
future spinal cord | 2.72e-14 | 52 |
neural keel | 2.72e-14 | 52 |
regional part of nervous system | 5.31e-13 | 54 |
brain | 3.36e-12 | 47 |
future brain | 3.36e-12 | 47 |
anterior neural tube | 7.91e-12 | 40 |
regional part of brain | 8.09e-12 | 46 |
regional part of forebrain | 1.58e-11 | 39 |
forebrain | 1.58e-11 | 39 |
future forebrain | 1.58e-11 | 39 |
gray matter | 1.77e-11 | 34 |
brain grey matter | 4.57e-09 | 29 |
regional part of telencephalon | 4.57e-09 | 29 |
telencephalon | 4.57e-09 | 29 |
embryo | 2.79e-07 | 320 |
cerebral cortex | 6.66e-07 | 21 |
cerebral hemisphere | 6.66e-07 | 21 |
pallium | 6.66e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.