FFCP PHASE1:Mm9::chr6:22825522..22825537,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19283|HGNC=|MCL_coexpression_id=1|UniProt=B9EKR1,B2RXS8|association_with_transcript=20bp_to_ENSMUST00000090568,NM_001081306,uc009bba.1,uc009bbb.1,uc012eim.1_5end|description=CAGE_peak_1_at_Ptprz1_5end|id=chr6:22825522..22825537,+|ontology_enrichment_celltype=CL:0000221!1.82e-16!44;CL:0000133!1.82e-16!44;CL:0002319!4.89e-16!43;CL:0000540!5.37e-16!33;CL:0000047!5.37e-16!33;CL:0000031!5.37e-16!33;CL:0000404!5.37e-16!33;CL:0000117!2.19e-13!23;CL:0000337!2.19e-13!23;CL:0000393!1.04e-10!39;CL:0000211!1.04e-10!39;CL:0000055!1.08e-10!50|ontology_enrichment_celltype_v019_2=CL:0000221,1.26e-16,44;CL:0000133,1.26e-16,44;CL:0000540,1.90e-16,33;CL:0000047,1.90e-16,33;CL:0000031,1.90e-16,33;CL:0000404,1.90e-16,33;CL:0002319,3.48e-16,43;CL:0000117,9.35e-14,23;CL:0000337,9.35e-14,23;CL:0000393,3.08e-11,39;CL:0000211,3.08e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.82e-33!73;UBERON:0005743!5.82e-33!73;UBERON:0004121!6.16e-33!102;UBERON:0000924!6.16e-33!102;UBERON:0006601!6.16e-33!102;UBERON:0000073!2.72e-32!75;UBERON:0001016!2.72e-32!75;UBERON:0002346!9.12e-26!71;UBERON:0003075!9.12e-26!71;UBERON:0007284!9.12e-26!71;UBERON:0000033!1.16e-24!63;UBERON:0001049!1.05e-23!52;UBERON:0005068!1.05e-23!52;UBERON:0006241!1.05e-23!52;UBERON:0007135!1.05e-23!52;UBERON:0000955!8.98e-23!50;UBERON:0006238!8.98e-23!50;UBERON:0002616!4.60e-22!49;UBERON:0002020!4.75e-19!34;UBERON:0003056!1.06e-18!49;UBERON:0003080!1.09e-17!40;UBERON:0002780!5.48e-17!39;UBERON:0001890!5.48e-17!39;UBERON:0006240!5.48e-17!39;UBERON:0002791!4.11e-16!29;UBERON:0003528!4.11e-16!29;UBERON:0001893!4.11e-16!29;UBERON:0007811!4.71e-13!86;UBERON:0000153!7.55e-13!94;UBERON:0000956!9.59e-12!21;UBERON:0001869!9.59e-12!21;UBERON:0000203!9.59e-12!21;UBERON:0002619!1.56e-09!17;UBERON:0000468!6.28e-09!333;UBERON:0002021!7.49e-07!10;UBERON:0000411!7.49e-07!10;UBERON:0001950!7.49e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.38e-33,73;UBERON:0001016,6.65e-33,75;UBERON:0004121,8.68e-33,95;UBERON:0000924,8.68e-33,95;UBERON:0006601,8.68e-33,95;UBERON:0002346,2.58e-26,64;UBERON:0003075,2.58e-26,64;UBERON:0007284,2.58e-26,64;UBERON:0000073,1.38e-25,54;UBERON:0010371,3.04e-25,73;UBERON:0001049,4.75e-24,52;UBERON:0005068,4.75e-24,52;UBERON:0006241,4.75e-24,52;UBERON:0007135,4.75e-24,52;UBERON:0000955,5.82e-21,47;UBERON:0006238,5.82e-21,47;UBERON:0002616,3.00e-20,46;UBERON:0002020,1.35e-19,34;UBERON:0003056,3.08e-19,49;UBERON:0010314,3.15e-19,92;UBERON:0003080,3.41e-18,40;UBERON:0002780,1.81e-17,39;UBERON:0001890,1.81e-17,39;UBERON:0006240,1.81e-17,39;UBERON:0003528,1.44e-16,29;UBERON:0002791,1.44e-16,29;UBERON:0001893,1.44e-16,29;UBERON:0000956,4.61e-12,21;UBERON:0001869,4.61e-12,21;UBERON:0000203,4.61e-12,21;UBERON:0002619,8.77e-10,17;UBERON:0002021,5.10e-07,10;UBERON:0000411,5.10e-07,10;UBERON:0001950,5.10e-07,10|phase1_expression=19.2178616525753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.4778788074947,0,0,0.159992422793407,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,35.7561256463932,7.0299578475031,14.5822424305713,13.4386964760348,23.0004102983955,0,0,0,0.257259436035947,1.71920063963254,0,42.6887732413751,46.5512061759389,50.0726808769882,1.69422266034566,3.55717918444456,0,0,0,29.0612107202853,53.0221261343745,68.6425233482122,66.8279394741869,80.3441352362279,53.7023850679151,50.1371587960163,80.5989458834398,48.2102719221729,85.4873471547319,124.430945529309,105.086679244109,96.1576898184084,53.9414916816493,43.548118354747,68.7605649134923,39.3648028591947,75.4101897442451,75.0239396584138,139.948578099992,131.266689696773,51.6326464936083,1.06016670666458,6.42358260907677,0.289864488701678,0,0.679971333707751,0,0,0,6.74133216632409,0,0,0,38.5910970188105,0,0,0,3.24736561516821,3.29367825117628,3.0331466700887,4.68153906848146,0,2.3750742250372,7.28638372417771,16.1366703505435,11.0695438682908,10.8520301197888,8.11362079236363,2.63899841792318,0,27.763076528623,3.5384422077995,17.1472860944254,5.96272099843063,12.1218813283806,1.86391761218122,115.35563402255,161.064517539547,0,0,0,0,126.42329965767,103.39513623701,142.617689648101,97.6892679480594,91.5461337242583,110.543239705686,102.04975446962,0.916554274652847,9.20611582514688,0,8.41767423545896,7.93734702072493,7.12696523743766,13.1445354757905,16.2761203262572,23.9488477012674,30.2348379872245,23.9876414872906,16.298312356558,0.862271971731369,4.34943984385984,4.75068035242662,6.57587197282724,6.95118123063995,16.716103993064,26.3401134602168,2.18937693500343,0,0,0,0.207125772535502,0.469052119962192,2.16074473753218,4.49814997611899,1.96764231747404,2.62254091908543,0.930135779001631,2.41446061259657,1.40118410840603,3.45575684818309,2.46251196118643,1.4592385718254,1.16959989940266,0.878200461164203,1.8788898626452,90.4246778825747,137.068943689207,0,0.528901133327089,0.853153002140936,2.78684006232526,3.73715637834071,5.24377164020691,2.00140239460383,3.99473814836374,0.9490581230890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| ||
|EntrezGene=19283 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=B9EKR1,B2RXS8 | |||
|association_with_transcript=20bp_to_ENSMUST00000090568,NM_001081306,uc009bba.1,uc009bbb.1,uc012eim.1_5end | |||
|description=CAGE_peak_1_at_Ptprz1_5end | |||
|id=chr6:22825522..22825537,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.82e-16!44;CL:0000133!1.82e-16!44;CL:0002319!4.89e-16!43;CL:0000540!5.37e-16!33;CL:0000047!5.37e-16!33;CL:0000031!5.37e-16!33;CL:0000404!5.37e-16!33;CL:0000117!2.19e-13!23;CL:0000337!2.19e-13!23;CL:0000393!1.04e-10!39;CL:0000211!1.04e-10!39;CL:0000055!1.08e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.26e-16,44;CL:0000133,1.26e-16,44;CL:0000540,1.90e-16,33;CL:0000047,1.90e-16,33;CL:0000031,1.90e-16,33;CL:0000404,1.90e-16,33;CL:0002319,3.48e-16,43;CL:0000117,9.35e-14,23;CL:0000337,9.35e-14,23;CL:0000393,3.08e-11,39;CL:0000211,3.08e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.82e-33!73;UBERON:0005743!5.82e-33!73;UBERON:0004121!6.16e-33!102;UBERON:0000924!6.16e-33!102;UBERON:0006601!6.16e-33!102;UBERON:0000073!2.72e-32!75;UBERON:0001016!2.72e-32!75;UBERON:0002346!9.12e-26!71;UBERON:0003075!9.12e-26!71;UBERON:0007284!9.12e-26!71;UBERON:0000033!1.16e-24!63;UBERON:0001049!1.05e-23!52;UBERON:0005068!1.05e-23!52;UBERON:0006241!1.05e-23!52;UBERON:0007135!1.05e-23!52;UBERON:0000955!8.98e-23!50;UBERON:0006238!8.98e-23!50;UBERON:0002616!4.60e-22!49;UBERON:0002020!4.75e-19!34;UBERON:0003056!1.06e-18!49;UBERON:0003080!1.09e-17!40;UBERON:0002780!5.48e-17!39;UBERON:0001890!5.48e-17!39;UBERON:0006240!5.48e-17!39;UBERON:0002791!4.11e-16!29;UBERON:0003528!4.11e-16!29;UBERON:0001893!4.11e-16!29;UBERON:0007811!4.71e-13!86;UBERON:0000153!7.55e-13!94;UBERON:0000956!9.59e-12!21;UBERON:0001869!9.59e-12!21;UBERON:0000203!9.59e-12!21;UBERON:0002619!1.56e-09!17;UBERON:0000468!6.28e-09!333;UBERON:0002021!7.49e-07!10;UBERON:0000411!7.49e-07!10;UBERON:0001950!7.49e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.38e-33,73;UBERON:0001016,6.65e-33,75;UBERON:0004121,8.68e-33,95;UBERON:0000924,8.68e-33,95;UBERON:0006601,8.68e-33,95;UBERON:0002346,2.58e-26,64;UBERON:0003075,2.58e-26,64;UBERON:0007284,2.58e-26,64;UBERON:0000073,1.38e-25,54;UBERON:0010371,3.04e-25,73;UBERON:0001049,4.75e-24,52;UBERON:0005068,4.75e-24,52;UBERON:0006241,4.75e-24,52;UBERON:0007135,4.75e-24,52;UBERON:0000955,5.82e-21,47;UBERON:0006238,5.82e-21,47;UBERON:0002616,3.00e-20,46;UBERON:0002020,1.35e-19,34;UBERON:0003056,3.08e-19,49;UBERON:0010314,3.15e-19,92;UBERON:0003080,3.41e-18,40;UBERON:0002780,1.81e-17,39;UBERON:0001890,1.81e-17,39;UBERON:0006240,1.81e-17,39;UBERON:0003528,1.44e-16,29;UBERON:0002791,1.44e-16,29;UBERON:0001893,1.44e-16,29;UBERON:0000956,4.61e-12,21;UBERON:0001869,4.61e-12,21;UBERON:0000203,4.61e-12,21;UBERON:0002619,8.77e-10,17;UBERON:0002021,5.10e-07,10;UBERON:0000411,5.10e-07,10;UBERON:0001950,5.10e-07,10 | |||
|phase1_expression=19.2178616525753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.4778788074947,0,0,0.159992422793407,0,0,0,0.215471232685889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,35.7561256463932,7.0299578475031,14.5822424305713,13.4386964760348,23.0004102983955,0,0,0,0.257259436035947,1.71920063963254,0,42.6887732413751,46.5512061759389,50.0726808769882,1.69422266034566,3.55717918444456,0,0,0,29.0612107202853,53.0221261343745,68.6425233482122,66.8279394741869,80.3441352362279,53.7023850679151,50.1371587960163,80.5989458834398,48.2102719221729,85.4873471547319,124.430945529309,105.086679244109,96.1576898184084,53.9414916816493,43.548118354747,68.7605649134923,39.3648028591947,75.4101897442451,75.0239396584138,139.948578099992,131.266689696773,51.6326464936083,1.06016670666458,6.42358260907677,0.289864488701678,0,0.679971333707751,0,0,0,6.74133216632409,0,0,0,38.5910970188105,0,0,0,3.24736561516821,3.29367825117628,3.0331466700887,4.68153906848146,0,2.3750742250372,7.28638372417771,16.1366703505435,11.0695438682908,10.8520301197888,8.11362079236363,2.63899841792318,0,27.763076528623,3.5384422077995,17.1472860944254,5.96272099843063,12.1218813283806,1.86391761218122,115.35563402255,161.064517539547,0,0,0,0,126.42329965767,103.39513623701,142.617689648101,97.6892679480594,91.5461337242583,110.543239705686,102.04975446962,0.916554274652847,9.20611582514688,0,8.41767423545896,7.93734702072493,7.12696523743766,13.1445354757905,16.2761203262572,23.9488477012674,30.2348379872245,23.9876414872906,16.298312356558,0.862271971731369,4.34943984385984,4.75068035242662,6.57587197282724,6.95118123063995,16.716103993064,26.3401134602168,2.18937693500343,0,0,0,0.207125772535502,0.469052119962192,2.16074473753218,4.49814997611899,1.96764231747404,2.62254091908543,0.930135779001631,2.41446061259657,1.40118410840603,3.45575684818309,2.46251196118643,1.4592385718254,1.16959989940266,0.878200461164203,1.8788898626452,90.4246778825747,137.068943689207,0,0.528901133327089,0.853153002140936,2.78684006232526,3.73715637834071,5.24377164020691,2.00140239460383,3.99473814836374,0.949058123089023,2.47048432086016,4.77536896720512,2.78539060857611,4.09424582950152,1.79763881730844,1.72910439899755,1.7922714592893,0.569003702859245,3.08470984046268,1.1270773567308,1.4255592949172,1.55161989734101,0.701358198903186,0.316182685621286,0.147610147979602,0,0.123397163921801,0,0.166845105716094,0,0,0.405720242777006,0.241177159752417,0.25462585178142,0,0,0.274561413188081,1.43768206527355,0.372140947668503,0.312037673114561,0,0.179397413521912,0,4.0645701836653,2.08440552947533,1.62964976442026,2.37643120085263,1.40814148973101,1.50755631697634,0.952174563544055,2.34160377429359,2.36452716159286,1.99318220683897,2.55127629851979,2.78567635016755,2.24490476425664,1.88043776155965,0,0,0.491764273019036,0.551873492609465,83.9679585636152,73.1400924335348,0,1.76729649043061,28.0802315280468,27.3307121007647,34.252320239515,43.731290025317,38.989767964419,60.2953010580213,14.5731852602962,22.7959569170823,26.8795689003636,110.855854165523,2.41298144854057,2.67098405500883,1.62886959353576,2.3095817216155,0,0.971122544619926,1.51161778482376,1.32023555829129,2.06711325016541,3.3817866273832,2.32585463851399,2.90826983582004,3.20847640546249,1.8962205476149,1.05418608574999,0,8.5109901438447,10.0834212657534,4.52755393239641,3.42939256050548,4.96552654198366,10.3453914209201,19.4167844310503,18.8768268451052,0.469343416127421,0,23.376010193826,4.78170133530292,16.9537648030701,10.4944489374991,5.49112782414428,5.0883678920969,1.7488850197791,76.024373824309,0.170870880797853,2.06386867963222,0.370389054739423,0,0.683471138605126,0,0,0.279902904647316,0,1.90934123603023,3.16335993581135,6.91286188231286,5.29226170026826,5.85447228840512,7.42432716737004,7.55240339754996,6.19900917940019,3.14107130380836,3.88844919875379,8.69875038321696,0,2.0932316446157,0.330916980914195,0.972255941720238,1.80823752868824,1.18269287843545,0.938857909166032,1.0416350787516,0.524296722128554,0,0.288030006257865,3.16011120628178,4.05450430580328,2.77319584345034,1.42912905275575,3.04345382634718,1.78813219303138,1.08175904567972,1.47689527174577,1.71642964911851,1.82896335972,0.705783295957884,0.584747284438515,1.05833025804362,1.28564592399726,9.06921534460846,0,0.0897138566094757,0,38.0583500243415,3.94133198447482,1.28206136987086,21.0081011497485,4.01257683228291,113.51512036603,97.5889501395215,106.558565499728,112.563834435115,63.7126743386697,67.985450765073,68.1772725234124,45.032120322422,59.3616555769308,57.471394604452,6.53860289780313,26.3356416444681,13.8294220660849,21.6364978190782,17.8171188233785,24.8188736407519,36.2262166316633,30.4931884713563,32.7337593783652,35.1249124351679,34.4731847850726,34.3299941322659,31.1826219874708,29.899746173074,30.440798546475,36.6746142287967,27.3487009229859,29.7080199514106,31.7306143618546,29.7341818671483,31.2011019670728,26.2664193115819,26.4664170841526,38.3714539909347,32.7500643845351,32.407394822512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| |||
|short_description=p1@Ptprz1 | |||
}} |
Revision as of 09:30, 14 September 2013
Short description: | p1@Ptprz1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ptprz1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 20bp_to_ENSMUST00000090568, NM_001081306, uc009bba.1, uc009bbb.1, uc012eim.1_5end |
EntrezGene: | Ptprz1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.26e-16 | 44 |
neurectodermal cell | 1.26e-16 | 44 |
neuron | 1.90e-16 | 33 |
neuronal stem cell | 1.90e-16 | 33 |
neuroblast | 1.90e-16 | 33 |
electrically signaling cell | 1.90e-16 | 33 |
neural cell | 3.48e-16 | 43 |
CNS neuron (sensu Vertebrata) | 9.35e-14 | 23 |
neuroblast (sensu Vertebrata) | 9.35e-14 | 23 |
electrically responsive cell | 3.08e-11 | 39 |
electrically active cell | 3.08e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.38e-33 | 73 |
nervous system | 6.65e-33 | 75 |
ectoderm-derived structure | 8.68e-33 | 95 |
ectoderm | 8.68e-33 | 95 |
presumptive ectoderm | 8.68e-33 | 95 |
neurectoderm | 2.58e-26 | 64 |
neural plate | 2.58e-26 | 64 |
presumptive neural plate | 2.58e-26 | 64 |
regional part of nervous system | 1.38e-25 | 54 |
ecto-epithelium | 3.04e-25 | 73 |
neural tube | 4.75e-24 | 52 |
neural rod | 4.75e-24 | 52 |
future spinal cord | 4.75e-24 | 52 |
neural keel | 4.75e-24 | 52 |
brain | 5.82e-21 | 47 |
future brain | 5.82e-21 | 47 |
regional part of brain | 3.00e-20 | 46 |
gray matter | 1.35e-19 | 34 |
pre-chordal neural plate | 3.08e-19 | 49 |
structure with developmental contribution from neural crest | 3.15e-19 | 92 |
anterior neural tube | 3.41e-18 | 40 |
regional part of forebrain | 1.81e-17 | 39 |
forebrain | 1.81e-17 | 39 |
future forebrain | 1.81e-17 | 39 |
brain grey matter | 1.44e-16 | 29 |
regional part of telencephalon | 1.44e-16 | 29 |
telencephalon | 1.44e-16 | 29 |
cerebral cortex | 4.61e-12 | 21 |
cerebral hemisphere | 4.61e-12 | 21 |
pallium | 4.61e-12 | 21 |
regional part of cerebral cortex | 8.77e-10 | 17 |
occipital lobe | 5.10e-07 | 10 |
visual cortex | 5.10e-07 | 10 |
neocortex | 5.10e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.