FFCP PHASE1:Mm9::chr6:125046150..125046159,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=107932|HGNC=|UniProt=E9QAS5|association_with_transcript=-20bp_to_ENSMUST00000112390_5end|description=CAGE_peak_4_at_Chd4_5end|id=chr6:125046150..125046159,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002780!5.53e-09!39;UBERON:0001890!5.53e-09!39;UBERON:0006240!5.53e-09!39;UBERON:0003056!9.84e-09!49;UBERON:0003080!1.54e-08!40;UBERON:0000153!8.64e-08!94;UBERON:0007811!1.04e-07!86;UBERON:0002791!3.05e-07!29;UBERON:0003528!3.05e-07!29;UBERON:0001893!3.05e-07!29;UBERON:0002020!4.05e-07!34;UBERON:0001049!7.03e-07!52;UBERON:0005068!7.03e-07!52;UBERON:0006241!7.03e-07!52;UBERON:0007135!7.03e-07!52;UBERON:0002616!7.61e-07!49;UBERON:0000033!9.73e-07!63|ontology_enrichment_uberon_v019_2=UBERON:0002780,5.58e-09,39;UBERON:0001890,5.58e-09,39;UBERON:0006240,5.58e-09,39;UBERON:0003056,1.06e-08,49;UBERON:0003080,1.56e-08,40;UBERON:0002616,2.14e-07,46;UBERON:0003528,3.21e-07,29;UBERON:0002791,3.21e-07,29;UBERON:0001893,3.21e-07,29;UBERON:0002020,4.21e-07,34;UBERON:0000955,4.23e-07,47;UBERON:0006238,4.23e-07,47;UBERON:0000073,4.80e-07,54;UBERON:0001049,6.46e-07,52;UBERON:0005068,6.46e-07,52;UBERON:0006241,6.46e-07,52;UBERON:0007135,6.46e-07,52|phase1_expression=2.40223270657191,3.83872948403297,1.81999695755814,2.41971369045464,3.00537437967808,1.34303417529512,1.63528848416868,1.54947988129892,1.267098499365,1.87251621057595,0.68487187290202,0.638177271962691,3.25281386869291,1.48614684112296,2.6648780945253,3.44207954562704,0.699561878128147,2.68142840554502,2.33094537129756,1.69755860719212,3.99703463710028,2.08510997521859,1.04479915655574,1.59992422793407,0.68822784320151,2.8711598205751,3.01533397311352,1.29282739611533,1.52018735565099,2.26827116783938,0.221730510655305,1.90509202037889,1.23012957516914,15.8481681015439,0.577703239502549,0.498703936075477,1.22501613757421,2.92972141515835,0.7813353445238,1.57057123192139,3.52938892818609,5.46436387966757,0.971020706062307,0.503587271902309,0.608261587317087,1.10128051297009,1.56478268869608,1.30815093828268,0.878744730937887,1.1665793944457,0.699932108126813,1.43752564364972,1.51004345451963,2.17608642603403,2.01656279485478,1.02903774414379,1.14613375975503,2.57836046138721,5.05791152148994,4.23192783417626,1.26766280701236,3.04960078862219,0.889294796111139,0.899899717281399,1.97773272513395,0,1.49800055259202,1.15265491596466,5.80661828927475,6.48028503992115,5.67877395648731,1.14260393761521,1.32521124570968,5.26710436624302,5.271500906003,9.19218786610021,0,2.42605942361857,1.68967186581868,5.40733779693795,5.21479568533735,5.2091337055676,1.3959149950069,1.12552522006336,2.13917546887534,2.65165726926301,1.85083185038834,4.65998614563251,1.96888102666279,2.11600368298999,2.6087803983151,0.860423876981386,0,0.539703191637817,0,0,0.842666520790511,1.02258193546835,1.29893002301434,0,1.40843419776681,1.28326477414318,2.54805239706646,0,1.94841936910093,1.01343946190039,0,1.59857431606684,2.07150306917737,1.33597925158342,2.4287945747259,1.52232739156071,1.84492397804847,0.60289056221049,0.940709657085638,0.628332956648377,0.494389935468748,0.86759614151947,0,2.26473589926373,2.65009822152472,0.484875253135222,1.86391761218122,1.46390398505774,2.72280718857492,1.27728527604296,1.67741174308288,1.19980546198682,1.27070227073065,1.19832511523858,1.37250180845588,3.76963056338593,1.91206752211504,4.60287823194595,2.0778804455956,3.24482526135515,1.83310854930569,1.36847667671102,1.76905930903572,1.89397670297827,3.3831315170303,1.14951052216736,3.06105620669094,2.71268672104287,1.83698547708585,2.43416068541215,1.96773621575431,0.776110112217047,2.15567992932842,2.64748512234947,2.46331573829528,1.53437012699302,1.94633074457919,0.696504333044333,1.4404749548556,2.7864797354589,0.702213187313235,0.772043721344145,1.98914449576915,1.03562886267751,0.938104239924385,2.52086886045421,1.65721314909647,1.57411385397923,2.00547246753592,2.55787339225449,1.60964040839772,1.05088808130453,1.15191894939436,0.985004784474571,0.891756905004413,1.02339991197733,0,1.07365135008297,2.52347938276953,3.39585220851639,2.31293148088659,1.32225283331772,2.13288250535234,1.39342003116263,0.902072229254653,1.61346819698674,1.11189021922435,1.33157938278791,0.474529061544512,0.823494773620054,2.01068167040216,0.994782360205754,1.16978452271472,1.79763881730844,1.72910439899755,1.59313018603494,2.0863469104839,2.05647322697512,1.1270773567308,1.4255592949172,0.969762435838129,2.17421041659988,1.07502113111237,1.18088118383682,0.627994911365499,0.863780147452604,0,2.16898637430922,0.982794975566015,1.79889689907883,1.42002084971952,2.65294875727659,1.78238096246994,1.72617682470486,1.78348749452539,1.37280706594041,0,1.48856379067401,0.312037673114561,0.757736633841335,0.538192240565737,0.964887042726734,0.369506380333209,1.32643988239339,1.95557971730431,2.8856664581782,0.704070744865506,1.17254380209271,2.61848004974615,2.73187107000918,0.945810864637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| ||
|EntrezGene=107932 | |||
|HGNC= | |||
|UniProt=E9QAS5 | |||
|association_with_transcript=-20bp_to_ENSMUST00000112390_5end | |||
|description=CAGE_peak_4_at_Chd4_5end | |||
|id=chr6:125046150..125046159,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002780!5.53e-09!39;UBERON:0001890!5.53e-09!39;UBERON:0006240!5.53e-09!39;UBERON:0003056!9.84e-09!49;UBERON:0003080!1.54e-08!40;UBERON:0000153!8.64e-08!94;UBERON:0007811!1.04e-07!86;UBERON:0002791!3.05e-07!29;UBERON:0003528!3.05e-07!29;UBERON:0001893!3.05e-07!29;UBERON:0002020!4.05e-07!34;UBERON:0001049!7.03e-07!52;UBERON:0005068!7.03e-07!52;UBERON:0006241!7.03e-07!52;UBERON:0007135!7.03e-07!52;UBERON:0002616!7.61e-07!49;UBERON:0000033!9.73e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002780,5.58e-09,39;UBERON:0001890,5.58e-09,39;UBERON:0006240,5.58e-09,39;UBERON:0003056,1.06e-08,49;UBERON:0003080,1.56e-08,40;UBERON:0002616,2.14e-07,46;UBERON:0003528,3.21e-07,29;UBERON:0002791,3.21e-07,29;UBERON:0001893,3.21e-07,29;UBERON:0002020,4.21e-07,34;UBERON:0000955,4.23e-07,47;UBERON:0006238,4.23e-07,47;UBERON:0000073,4.80e-07,54;UBERON:0001049,6.46e-07,52;UBERON:0005068,6.46e-07,52;UBERON:0006241,6.46e-07,52;UBERON:0007135,6.46e-07,52 | |||
|phase1_expression=2.40223270657191,3.83872948403297,1.81999695755814,2.41971369045464,3.00537437967808,1.34303417529512,1.63528848416868,1.54947988129892,1.267098499365,1.87251621057595,0.68487187290202,0.638177271962691,3.25281386869291,1.48614684112296,2.6648780945253,3.44207954562704,0.699561878128147,2.68142840554502,2.33094537129756,1.69755860719212,3.99703463710028,2.08510997521859,1.04479915655574,1.59992422793407,0.68822784320151,2.8711598205751,3.01533397311352,1.29282739611533,1.52018735565099,2.26827116783938,0.221730510655305,1.90509202037889,1.23012957516914,15.8481681015439,0.577703239502549,0.498703936075477,1.22501613757421,2.92972141515835,0.7813353445238,1.57057123192139,3.52938892818609,5.46436387966757,0.971020706062307,0.503587271902309,0.608261587317087,1.10128051297009,1.56478268869608,1.30815093828268,0.878744730937887,1.1665793944457,0.699932108126813,1.43752564364972,1.51004345451963,2.17608642603403,2.01656279485478,1.02903774414379,1.14613375975503,2.57836046138721,5.05791152148994,4.23192783417626,1.26766280701236,3.04960078862219,0.889294796111139,0.899899717281399,1.97773272513395,0,1.49800055259202,1.15265491596466,5.80661828927475,6.48028503992115,5.67877395648731,1.14260393761521,1.32521124570968,5.26710436624302,5.271500906003,9.19218786610021,0,2.42605942361857,1.68967186581868,5.40733779693795,5.21479568533735,5.2091337055676,1.3959149950069,1.12552522006336,2.13917546887534,2.65165726926301,1.85083185038834,4.65998614563251,1.96888102666279,2.11600368298999,2.6087803983151,0.860423876981386,0,0.539703191637817,0,0,0.842666520790511,1.02258193546835,1.29893002301434,0,1.40843419776681,1.28326477414318,2.54805239706646,0,1.94841936910093,1.01343946190039,0,1.59857431606684,2.07150306917737,1.33597925158342,2.4287945747259,1.52232739156071,1.84492397804847,0.60289056221049,0.940709657085638,0.628332956648377,0.494389935468748,0.86759614151947,0,2.26473589926373,2.65009822152472,0.484875253135222,1.86391761218122,1.46390398505774,2.72280718857492,1.27728527604296,1.67741174308288,1.19980546198682,1.27070227073065,1.19832511523858,1.37250180845588,3.76963056338593,1.91206752211504,4.60287823194595,2.0778804455956,3.24482526135515,1.83310854930569,1.36847667671102,1.76905930903572,1.89397670297827,3.3831315170303,1.14951052216736,3.06105620669094,2.71268672104287,1.83698547708585,2.43416068541215,1.96773621575431,0.776110112217047,2.15567992932842,2.64748512234947,2.46331573829528,1.53437012699302,1.94633074457919,0.696504333044333,1.4404749548556,2.7864797354589,0.702213187313235,0.772043721344145,1.98914449576915,1.03562886267751,0.938104239924385,2.52086886045421,1.65721314909647,1.57411385397923,2.00547246753592,2.55787339225449,1.60964040839772,1.05088808130453,1.15191894939436,0.985004784474571,0.891756905004413,1.02339991197733,0,1.07365135008297,2.52347938276953,3.39585220851639,2.31293148088659,1.32225283331772,2.13288250535234,1.39342003116263,0.902072229254653,1.61346819698674,1.11189021922435,1.33157938278791,0.474529061544512,0.823494773620054,2.01068167040216,0.994782360205754,1.16978452271472,1.79763881730844,1.72910439899755,1.59313018603494,2.0863469104839,2.05647322697512,1.1270773567308,1.4255592949172,0.969762435838129,2.17421041659988,1.07502113111237,1.18088118383682,0.627994911365499,0.863780147452604,0,2.16898637430922,0.982794975566015,1.79889689907883,1.42002084971952,2.65294875727659,1.78238096246994,1.72617682470486,1.78348749452539,1.37280706594041,0,1.48856379067401,0.312037673114561,0.757736633841335,0.538192240565737,0.964887042726734,0.369506380333209,1.32643988239339,1.95557971730431,2.8856664581782,0.704070744865506,1.17254380209271,2.61848004974615,2.73187107000918,0.945810864637146,2.87904096543407,1.75400245523236,1.14704320301017,1.03610989119537,0.723245292907558,3.01582567878545,2.17562273527484,1.47529281905711,0.551873492609465,1.12385412991454,1.40654023910644,1.3114795630134,1.26235463602186,1.26203287766503,1.17131623288992,1.50796378412959,1.43381278771531,1.78238939265915,3.11384183867716,1.21443210502468,2.63030272120181,2.76701444562566,1.28528526568723,0.851640511249612,1.06839362200353,1.95464351224291,1.64970122972535,0,1.69946445308487,3.32555912661226,1.50884063804718,0.590603785761546,0.614870295887855,0.775284879504663,0.727067458955011,0.712994756769443,0.632073515871632,1.05418608574999,0,2.38307724027652,3.42116078659489,2.58717367565509,2.14337035031592,2.30542303734956,2.31879462882692,2.13913726782757,1.8267896946876,0.938686832254841,1.0591603543191,0.882113592219848,2.63818004706368,1.45317984026315,2.23157822234177,1.67121281604391,2.29797259643086,1.1659233465194,0.556275906031529,2.39219233116994,2.06386867963222,2.96311243791539,3.95573759709851,3.41735569302563,1.83022538565218,0.849892149969277,1.39951452323658,1.65839968565309,0.954670618015114,2.37251995185852,1.82987520414164,1.51207477150522,2.09088296014469,1.74690050996942,1.07891477107857,1.32245529160537,2.6175594198403,1.42576470620972,1.24267862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| |||
|short_description=p4@Chd4 | |||
}} |
Revision as of 08:53, 14 September 2013
Short description: | p4@Chd4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Chd4_5end |
Coexpression cluster: | NA |
Association with transcript: | -20bp_to_ENSMUST00000112390_5end |
EntrezGene: | Chd4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of forebrain | 5.58e-09 | 39 |
forebrain | 5.58e-09 | 39 |
future forebrain | 5.58e-09 | 39 |
pre-chordal neural plate | 1.06e-08 | 49 |
anterior neural tube | 1.56e-08 | 40 |
regional part of brain | 2.14e-07 | 46 |
brain grey matter | 3.21e-07 | 29 |
regional part of telencephalon | 3.21e-07 | 29 |
telencephalon | 3.21e-07 | 29 |
gray matter | 4.21e-07 | 34 |
brain | 4.23e-07 | 47 |
future brain | 4.23e-07 | 47 |
regional part of nervous system | 4.80e-07 | 54 |
neural tube | 6.46e-07 | 52 |
neural rod | 6.46e-07 | 52 |
future spinal cord | 6.46e-07 | 52 |
neural keel | 6.46e-07 | 52 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.