FFCP PHASE1:Mm9::chr6:118147374..118147392,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19713|HGNC=|MCL_coexpression_id=114|UniProt=E9PZG6|association_with_transcript=-27bp_to_ENSMUST00000169872_5end|description=CAGE_peak_2_at_Ret_5end|id=chr6:118147374..118147392,-|ontology_enrichment_celltype=CL:0000540!2.54e-08!33;CL:0000047!2.54e-08!33;CL:0000031!2.54e-08!33;CL:0000404!2.54e-08!33;CL:0000107!1.32e-07!9|ontology_enrichment_celltype_v019_2=CL:0000540,1.20e-08,33;CL:0000047,1.20e-08,33;CL:0000031,1.20e-08,33;CL:0000404,1.20e-08,33;CL:0000107,4.67e-08,9;CL:0000393,5.97e-07,39;CL:0000211,5.97e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.63e-08!102;UBERON:0000924!2.63e-08!102;UBERON:0006601!2.63e-08!102;UBERON:0000010!9.62e-08!11;UBERON:0002410!1.32e-07!9;UBERON:0000160!6.68e-07!43|ontology_enrichment_uberon_v019_2=UBERON:0000010,3.33e-08,11;UBERON:0002410,4.67e-08,9;UBERON:0004121,4.01e-07,95;UBERON:0000924,4.01e-07,95;UBERON:0006601,4.01e-07,95|phase1_expression=1.76163731815273,2.79180326111489,5.91499011206397,0.30246421130683,2.00358291978539,3.3575854382378,3.50418960893289,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7008658030214,0,0,3.83981814704176,2.2940928106717,4.59385571292016,3.87685796543167,2.15471232685889,1.71021077510736,2.52030129759931,5.32153225572731,0,0,0,0,0,0,0,0,0,0,0,0.485510353031154,0.125896817975577,0.101376931219515,7.15832333430558,1.56478268869608,0,0.439372365468944,0.194429899074283,2.51975558925653,1.43752564364972,0.167782606057736,0,0,4.3734104126111,0.286533439938757,0,4.45096213891115,3.70293685490423,1.26766280701236,1.0165335962074,1.77858959222228,1.3498495759221,1.97773272513395,2.1314403448383,2.09720077362883,0.384218305321555,0.103689612308478,0.135005938331691,0,33.7068161596488,27.3876990780001,0.122490799214954,0.191690942036473,0.919218786610021,23.1243350098716,21.4514727983115,26.1131106535614,2.90149833006426,2.56165402086747,1.56274011167028,22.8930059181132,25.8870800614573,32.8516232720142,24.7488011797881,27.7624777558251,18.2671456908795,2.49896437999507,10.202160614416,0.289864488701678,0,0.679971333707751,0,0.649776417447669,0,2.24711072210803,1.1930122580464,1.29893002301434,3.18005617059306,0.14084341977668,0,0,0,0.649473123033642,0.253359865475099,0,1.02765491747154,0.258937883647172,0.29688427812965,7.28638372417771,5.78484408793068,3.22861696158482,2.56228488939458,2.93971767839262,1.25666591329675,0.988779870937496,1.44599356919912,0.884610551949874,1.13236794963186,1.98757366614354,3.39412677194655,5.59175283654366,4.39171195517321,6.0739544975902,1.78819938646014,0,0,0,6.89036941262184,1.37250180845588,0,1.21677024134594,0.767146371990992,17.454195743003,8.76102820565891,0.407357455401265,2.73695335342205,3.53811861807145,0.841767423545896,0.910843100738926,7.35686734187113,9.90341713929421,3.31550599238573,4.28629944653366,4.61209393025459,4.49768277886698,9.05461797586555,0,0.378212160335639,0.175951124163949,0.43839146485515,0,0.348252166522167,0.61734640922383,0.796137067273973,0,0,0,0,0.234526059981096,0,0.946978942340841,0.196764231747404,0.308534225774757,0,1.07309360559848,0.233530684734339,1.31647879930784,3.2833492815819,2.10778904819225,3.21639972335731,4.83010253640311,3.08674763148855,0.630869845692382,1.02904612379284,0.330418782983798,3.96675849995316,11.7308537794379,9.28946687441754,10.3093969057675,12.5043785266472,12.8979265430025,14.2669219584419,6.64340686162316,13.5053142873689,14.0747716928151,17.3092130675801,15.5971269695296,7.19055526923377,3.6743468478698,2.38969527905241,7.96605184002943,9.82537208443668,7.88954149711563,5.7022371796688,4.07300223052014,4.83937157243198,0.316182685621286,0.295220295959204,0.31399745568275,0.123397163921801,0,0,0.196558995113203,0,0.202860121388503,0.241177159752417,0,0.287696137450811,0.162135226775035,0,0,0,0,0.252578877947112,0.358794827043824,0,0.923765950833023,2.08440552947533,2.44447464663039,1.35796068620151,0.234690248288502,0.670025029767263,1.90434912708811,2.34160377429359,0.472905432318573,1.10732344824387,1.11618338060241,1.63863314715738,0.863424909329478,0.723245292907558,0,0,12.7858710984949,1.10374698521893,18.7844190285717,16.8784828692773,0,2.52470927204373,89.2888260948006,94.0957373754899,79.0603869679372,45.6430404089374,59.7100446540816,63.1260663659096,157.066552249859,119.240390027815,121.748635607529,3.21321316421807,0.709700426041343,0.712262414669021,0.651547837414304,1.81467135269789,2.65490276679926,8.74010290157933,11.4882951646605,18.6719028958339,10.0402643579463,5.53383266299069,4.39328098385976,3.27180356529755,5.70395805415554,2.21225730555071,0,3.09406629744561,0.680879211507576,1.44048875225048,1.03486947026204,0.857348140126369,1.95074257006501,5.17269571046005,9.3792941743209,13.700922710157,0.23467170806371,0.847328283455281,6.17479514553893,4.28704257647848,0.807322133479528,3.19658502119226,3.70054266409723,4.43180429311665,8.74442509889552,23.5490133553347,0,2.47664241555867,0,0,0,0,0.169978429993855,0.139951452323658,0.138199973804424,0.9546706180151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| ||
|EntrezGene=19713 | |||
|HGNC= | |||
|MCL_coexpression_id=114 | |||
|UniProt=E9PZG6 | |||
|association_with_transcript=-27bp_to_ENSMUST00000169872_5end | |||
|description=CAGE_peak_2_at_Ret_5end | |||
|id=chr6:118147374..118147392,- | |||
|ontology_enrichment_celltype=CL:0000540!2.54e-08!33;CL:0000047!2.54e-08!33;CL:0000031!2.54e-08!33;CL:0000404!2.54e-08!33;CL:0000107!1.32e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.20e-08,33;CL:0000047,1.20e-08,33;CL:0000031,1.20e-08,33;CL:0000404,1.20e-08,33;CL:0000107,4.67e-08,9;CL:0000393,5.97e-07,39;CL:0000211,5.97e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.63e-08!102;UBERON:0000924!2.63e-08!102;UBERON:0006601!2.63e-08!102;UBERON:0000010!9.62e-08!11;UBERON:0002410!1.32e-07!9;UBERON:0000160!6.68e-07!43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000010,3.33e-08,11;UBERON:0002410,4.67e-08,9;UBERON:0004121,4.01e-07,95;UBERON:0000924,4.01e-07,95;UBERON:0006601,4.01e-07,95 | |||
|phase1_expression=1.76163731815273,2.79180326111489,5.91499011206397,0.30246421130683,2.00358291978539,3.3575854382378,3.50418960893289,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7008658030214,0,0,3.83981814704176,2.2940928106717,4.59385571292016,3.87685796543167,2.15471232685889,1.71021077510736,2.52030129759931,5.32153225572731,0,0,0,0,0,0,0,0,0,0,0,0.485510353031154,0.125896817975577,0.101376931219515,7.15832333430558,1.56478268869608,0,0.439372365468944,0.194429899074283,2.51975558925653,1.43752564364972,0.167782606057736,0,0,4.3734104126111,0.286533439938757,0,4.45096213891115,3.70293685490423,1.26766280701236,1.0165335962074,1.77858959222228,1.3498495759221,1.97773272513395,2.1314403448383,2.09720077362883,0.384218305321555,0.103689612308478,0.135005938331691,0,33.7068161596488,27.3876990780001,0.122490799214954,0.191690942036473,0.919218786610021,23.1243350098716,21.4514727983115,26.1131106535614,2.90149833006426,2.56165402086747,1.56274011167028,22.8930059181132,25.8870800614573,32.8516232720142,24.7488011797881,27.7624777558251,18.2671456908795,2.49896437999507,10.202160614416,0.289864488701678,0,0.679971333707751,0,0.649776417447669,0,2.24711072210803,1.1930122580464,1.29893002301434,3.18005617059306,0.14084341977668,0,0,0,0.649473123033642,0.253359865475099,0,1.02765491747154,0.258937883647172,0.29688427812965,7.28638372417771,5.78484408793068,3.22861696158482,2.56228488939458,2.93971767839262,1.25666591329675,0.988779870937496,1.44599356919912,0.884610551949874,1.13236794963186,1.98757366614354,3.39412677194655,5.59175283654366,4.39171195517321,6.0739544975902,1.78819938646014,0,0,0,6.89036941262184,1.37250180845588,0,1.21677024134594,0.767146371990992,17.454195743003,8.76102820565891,0.407357455401265,2.73695335342205,3.53811861807145,0.841767423545896,0.910843100738926,7.35686734187113,9.90341713929421,3.31550599238573,4.28629944653366,4.61209393025459,4.49768277886698,9.05461797586555,0,0.378212160335639,0.175951124163949,0.43839146485515,0,0.348252166522167,0.61734640922383,0.796137067273973,0,0,0,0,0.234526059981096,0,0.946978942340841,0.196764231747404,0.308534225774757,0,1.07309360559848,0.233530684734339,1.31647879930784,3.2833492815819,2.10778904819225,3.21639972335731,4.83010253640311,3.08674763148855,0.630869845692382,1.02904612379284,0.330418782983798,3.96675849995316,11.7308537794379,9.28946687441754,10.3093969057675,12.5043785266472,12.8979265430025,14.2669219584419,6.64340686162316,13.5053142873689,14.0747716928151,17.3092130675801,15.5971269695296,7.19055526923377,3.6743468478698,2.38969527905241,7.96605184002943,9.82537208443668,7.88954149711563,5.7022371796688,4.07300223052014,4.83937157243198,0.316182685621286,0.295220295959204,0.31399745568275,0.123397163921801,0,0,0.196558995113203,0,0.202860121388503,0.241177159752417,0,0.287696137450811,0.162135226775035,0,0,0,0,0.252578877947112,0.358794827043824,0,0.923765950833023,2.08440552947533,2.44447464663039,1.35796068620151,0.234690248288502,0.670025029767263,1.90434912708811,2.34160377429359,0.472905432318573,1.10732344824387,1.11618338060241,1.63863314715738,0.863424909329478,0.723245292907558,0,0,12.7858710984949,1.10374698521893,18.7844190285717,16.8784828692773,0,2.52470927204373,89.2888260948006,94.0957373754899,79.0603869679372,45.6430404089374,59.7100446540816,63.1260663659096,157.066552249859,119.240390027815,121.748635607529,3.21321316421807,0.709700426041343,0.712262414669021,0.651547837414304,1.81467135269789,2.65490276679926,8.74010290157933,11.4882951646605,18.6719028958339,10.0402643579463,5.53383266299069,4.39328098385976,3.27180356529755,5.70395805415554,2.21225730555071,0,3.09406629744561,0.680879211507576,1.44048875225048,1.03486947026204,0.857348140126369,1.95074257006501,5.17269571046005,9.3792941743209,13.700922710157,0.23467170806371,0.847328283455281,6.17479514553893,4.28704257647848,0.807322133479528,3.19658502119226,3.70054266409723,4.43180429311665,8.74442509889552,23.5490133553347,0,2.47664241555867,0,0,0,0,0.169978429993855,0.139951452323658,0.138199973804424,0.954670618015114,14.5514557047322,9.96265388921559,9.28845931067491,4.80903080833278,5.24070152990826,3.9110660451598,5.86839535649885,1.30877970992015,3.49960427887841,26.7175904627378,0,0.448549638131936,1.32366792365678,0.777804753376191,0.904118764344118,0.675824501963113,0.704143431874524,8.72369378454466,6.71099804324549,2.17425708743405,2.01621004380506,0,1.01362607645082,0.410843828659309,0,0.716106782669926,0,0.240390899039938,0.147689527174577,0.302899349844443,0.0762068066549998,0.100826185136841,0.877120926657772,0.481059208201647,0.233753804363138,1.58711268530648,0.443971906748129,1.70456327558004,0.671538465456314,3.47741269257943,1.87682475451182,4.94509385521616,1.71494703263253,1.50471631210609,0,1.38097570952153,0,1.54667864109319,1.37016503954128,0.755393897389701,0,0,0.453142408984205,0,1.45302286617847,1.19707462020309,2.90247129782028,3.40349403895612,1.67690530102386,3.30918315210025,5.11167473943715,2.88449080134452,4.1719497246936,2.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| |||
|short_description=p2@Ret | |||
}} | |||
Revision as of 08:40, 14 September 2013
| Short description: | p2@Ret |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Ret_5end |
| Coexpression cluster: | MCL_coexpression_mm9:114 |
| Association with transcript: | -27bp_to_ENSMUST00000169872_5end |
| EntrezGene: | Ret |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neuron | 1.20e-08 | 33 |
| neuronal stem cell | 1.20e-08 | 33 |
| neuroblast | 1.20e-08 | 33 |
| electrically signaling cell | 1.20e-08 | 33 |
| autonomic neuron | 4.67e-08 | 9 |
| electrically responsive cell | 5.97e-07 | 39 |
| electrically active cell | 5.97e-07 | 39 |
| Ontology term | p-value | n |
|---|---|---|
| peripheral nervous system | 3.33e-08 | 11 |
| autonomic nervous system | 4.67e-08 | 9 |
| ectoderm-derived structure | 4.01e-07 | 95 |
| ectoderm | 4.01e-07 | 95 |
| presumptive ectoderm | 4.01e-07 | 95 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
