FFCP PHASE1:Mm9::chr5:33361595..33361614,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22629|HGNC=|MCL_coexpression_id=1|UniProt=E9Q4V8|association_with_transcript=68bp_to_ENSMUST00000163405_5end|description=CAGE_peak_3_at_Ywhah_5end|id=chr5:33361595..33361614,+|ontology_enrichment_celltype=CL:0000117!2.16e-13!23;CL:0000337!2.16e-13!23;CL:0000540!3.93e-11!33;CL:0000047!3.93e-11!33;CL:0000031!3.93e-11!33;CL:0000404!3.93e-11!33;CL:0000393!1.48e-07!39;CL:0000211!1.48e-07!39;CL:0002319!3.87e-07!43;CL:0000221!8.95e-07!44;CL:0000133!8.95e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,2.16e-13,23;CL:0000337,2.16e-13,23;CL:0000540,3.93e-11,33;CL:0000047,3.93e-11,33;CL:0000031,3.93e-11,33;CL:0000404,3.93e-11,33;CL:0000393,1.48e-07,39;CL:0000211,1.48e-07,39;CL:0002319,3.87e-07,43;CL:0000221,8.95e-07,44;CL:0000133,8.95e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.14e-17!73;UBERON:0005743!2.14e-17!73;UBERON:0000073!2.37e-17!75;UBERON:0001016!2.37e-17!75;UBERON:0002020!2.87e-17!34;UBERON:0001049!1.17e-16!52;UBERON:0005068!1.17e-16!52;UBERON:0006241!1.17e-16!52;UBERON:0007135!1.17e-16!52;UBERON:0000955!1.24e-15!50;UBERON:0006238!1.24e-15!50;UBERON:0002616!3.48e-15!49;UBERON:0002346!6.52e-15!71;UBERON:0003075!6.52e-15!71;UBERON:0007284!6.52e-15!71;UBERON:0002791!1.99e-14!29;UBERON:0003528!1.99e-14!29;UBERON:0001893!1.99e-14!29;UBERON:0003080!1.42e-12!40;UBERON:0002780!5.84e-12!39;UBERON:0001890!5.84e-12!39;UBERON:0006240!5.84e-12!39;UBERON:0000033!9.37e-12!63;UBERON:0003056!1.60e-11!49;UBERON:0004121!2.40e-10!102;UBERON:0000924!2.40e-10!102;UBERON:0006601!2.40e-10!102;UBERON:0000956!6.28e-10!21;UBERON:0001869!6.28e-10!21;UBERON:0000203!6.28e-10!21;UBERON:0000153!2.84e-09!94;UBERON:0007811!8.12e-09!86;UBERON:0002619!4.39e-08!17;UBERON:0002021!1.90e-07!10;UBERON:0000411!1.90e-07!10;UBERON:0001950!1.90e-07!10;UBERON:0000025!4.39e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.45e-18,54;UBERON:0001017,2.14e-17,73;UBERON:0001016,2.37e-17,75;UBERON:0002020,2.87e-17,34;UBERON:0001049,1.17e-16,52;UBERON:0005068,1.17e-16,52;UBERON:0006241,1.17e-16,52;UBERON:0007135,1.17e-16,52;UBERON:0002346,5.98e-16,64;UBERON:0003075,5.98e-16,64;UBERON:0007284,5.98e-16,64;UBERON:0010314,1.07e-15,92;UBERON:0003528,1.99e-14,29;UBERON:0002791,1.99e-14,29;UBERON:0001893,1.99e-14,29;UBERON:0000955,9.90e-14,47;UBERON:0006238,9.90e-14,47;UBERON:0002616,2.70e-13,46;UBERON:0003080,1.42e-12,40;UBERON:0002780,5.84e-12,39;UBERON:0001890,5.84e-12,39;UBERON:0006240,5.84e-12,39;UBERON:0003056,1.60e-11,49;UBERON:0004121,1.05e-10,95;UBERON:0000924,1.05e-10,95;UBERON:0006601,1.05e-10,95;UBERON:0010371,1.50e-10,73;UBERON:0000956,6.28e-10,21;UBERON:0001869,6.28e-10,21;UBERON:0000203,6.28e-10,21;UBERON:0002619,4.39e-08,17;UBERON:0002021,1.90e-07,10;UBERON:0000411,1.90e-07,10;UBERON:0001950,1.90e-07,10;UBERON:0000025,4.39e-07,114|phase1_expression=8.80818659076367,8.02643437570531,12.739978702907,9.67885476181856,10.0179145989269,12.4230661214798,14.2503710763271,10.8463591690924,3.66050677594334,6.08567768437183,8.90333434772626,7.8974437405383,10.785645985666,11.9765951314026,17.9879271380458,19.0326751346436,21.6864182219725,9.46386496074713,7.95263714913285,13.580468857537,14.3723160355308,15.0922245825346,13.8435888243636,13.5993559374396,11.4704640533585,10.9104073181854,12.4920978886132,9.48073423817912,11.9714754257516,13.3575968772763,12.8603696180077,8.25539875497521,11.6862309641068,15.8481681015439,10.1098066912946,14.2961795008303,12.6585000882669,4.18531630736908,3.906676722619,4.71171369576418,5.88231488031014,5.46436387966757,7.2826552954673,5.03587271902309,6.2853697356099,8.81024410376071,5.47673941043627,13.5175596955877,13.8402295122717,10.6936444490856,12.8787507895334,10.062679505548,8.89247812106003,13.7818806982155,6.72187598284928,18.0081605225163,9.16907007804022,12.3761302146586,32.3706337375356,26.4495489636016,33.5930643858275,10.165335962074,2.66788438833342,22.0475430733943,13.8441290759376,14.209602298922,11.9840044207362,10.7581125490035,23.226473157099,26.3261579746797,31.5487442027073,43.1332986449743,39.3146002893872,29.8877550084488,29.3287141315803,21.1420320920305,47.3498288297371,54.7778680385455,52.6870409068915,36.4006154135335,35.1312551433253,37.5057626800867,57.2325147952831,42.7699583624077,44.6170883508286,32.7037729875771,36.4471502845704,36.3478919359336,14.4637029266382,16.3990285431725,8.11620568364698,6.88339101585109,7.47968467078526,5.93673510801599,6.49776417447669,8.06448396775204,9.55022056895913,12.4414135481982,7.53379413348319,11.3068663843309,11.4083170019111,7.69958864485907,5.09610479413291,7.11066703153331,11.9070072556168,15.9616715249312,12.1325866803548,11.418387971906,15.2773351351831,12.3206975423805,18.0424739836781,11.2652226975492,17.9880087859726,17.182381022999,11.4061045921634,14.9543243682314,9.39340877390621,7.66376591675532,25.6537060065464,12.7795811458453,14.3546986999256,17.9403843660032,13.0474232852686,25.1791485429931,30.5792191947644,8.43008282188352,13.89855444268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| ||
|EntrezGene=22629 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=E9Q4V8 | |||
|association_with_transcript=68bp_to_ENSMUST00000163405_5end | |||
|description=CAGE_peak_3_at_Ywhah_5end | |||
|id=chr5:33361595..33361614,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.16e-13!23;CL:0000337!2.16e-13!23;CL:0000540!3.93e-11!33;CL:0000047!3.93e-11!33;CL:0000031!3.93e-11!33;CL:0000404!3.93e-11!33;CL:0000393!1.48e-07!39;CL:0000211!1.48e-07!39;CL:0002319!3.87e-07!43;CL:0000221!8.95e-07!44;CL:0000133!8.95e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.16e-13,23;CL:0000337,2.16e-13,23;CL:0000540,3.93e-11,33;CL:0000047,3.93e-11,33;CL:0000031,3.93e-11,33;CL:0000404,3.93e-11,33;CL:0000393,1.48e-07,39;CL:0000211,1.48e-07,39;CL:0002319,3.87e-07,43;CL:0000221,8.95e-07,44;CL:0000133,8.95e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.14e-17!73;UBERON:0005743!2.14e-17!73;UBERON:0000073!2.37e-17!75;UBERON:0001016!2.37e-17!75;UBERON:0002020!2.87e-17!34;UBERON:0001049!1.17e-16!52;UBERON:0005068!1.17e-16!52;UBERON:0006241!1.17e-16!52;UBERON:0007135!1.17e-16!52;UBERON:0000955!1.24e-15!50;UBERON:0006238!1.24e-15!50;UBERON:0002616!3.48e-15!49;UBERON:0002346!6.52e-15!71;UBERON:0003075!6.52e-15!71;UBERON:0007284!6.52e-15!71;UBERON:0002791!1.99e-14!29;UBERON:0003528!1.99e-14!29;UBERON:0001893!1.99e-14!29;UBERON:0003080!1.42e-12!40;UBERON:0002780!5.84e-12!39;UBERON:0001890!5.84e-12!39;UBERON:0006240!5.84e-12!39;UBERON:0000033!9.37e-12!63;UBERON:0003056!1.60e-11!49;UBERON:0004121!2.40e-10!102;UBERON:0000924!2.40e-10!102;UBERON:0006601!2.40e-10!102;UBERON:0000956!6.28e-10!21;UBERON:0001869!6.28e-10!21;UBERON:0000203!6.28e-10!21;UBERON:0000153!2.84e-09!94;UBERON:0007811!8.12e-09!86;UBERON:0002619!4.39e-08!17;UBERON:0002021!1.90e-07!10;UBERON:0000411!1.90e-07!10;UBERON:0001950!1.90e-07!10;UBERON:0000025!4.39e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.45e-18,54;UBERON:0001017,2.14e-17,73;UBERON:0001016,2.37e-17,75;UBERON:0002020,2.87e-17,34;UBERON:0001049,1.17e-16,52;UBERON:0005068,1.17e-16,52;UBERON:0006241,1.17e-16,52;UBERON:0007135,1.17e-16,52;UBERON:0002346,5.98e-16,64;UBERON:0003075,5.98e-16,64;UBERON:0007284,5.98e-16,64;UBERON:0010314,1.07e-15,92;UBERON:0003528,1.99e-14,29;UBERON:0002791,1.99e-14,29;UBERON:0001893,1.99e-14,29;UBERON:0000955,9.90e-14,47;UBERON:0006238,9.90e-14,47;UBERON:0002616,2.70e-13,46;UBERON:0003080,1.42e-12,40;UBERON:0002780,5.84e-12,39;UBERON:0001890,5.84e-12,39;UBERON:0006240,5.84e-12,39;UBERON:0003056,1.60e-11,49;UBERON:0004121,1.05e-10,95;UBERON:0000924,1.05e-10,95;UBERON:0006601,1.05e-10,95;UBERON:0010371,1.50e-10,73;UBERON:0000956,6.28e-10,21;UBERON:0001869,6.28e-10,21;UBERON:0000203,6.28e-10,21;UBERON:0002619,4.39e-08,17;UBERON:0002021,1.90e-07,10;UBERON:0000411,1.90e-07,10;UBERON:0001950,1.90e-07,10;UBERON:0000025,4.39e-07,114 | |||
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| |||
|short_description=p3@Ywhah | |||
}} |
Revision as of 07:28, 14 September 2013
Short description: | p3@Ywhah |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ywhah_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 68bp_to_ENSMUST00000163405_5end |
EntrezGene: | Ywhah |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.16e-13 | 23 |
neuroblast (sensu Vertebrata) | 2.16e-13 | 23 |
neuron | 3.93e-11 | 33 |
neuronal stem cell | 3.93e-11 | 33 |
neuroblast | 3.93e-11 | 33 |
electrically signaling cell | 3.93e-11 | 33 |
electrically responsive cell | 1.48e-07 | 39 |
electrically active cell | 1.48e-07 | 39 |
neural cell | 3.87e-07 | 43 |
ectodermal cell | 8.95e-07 | 44 |
neurectodermal cell | 8.95e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 5.45e-18 | 54 |
central nervous system | 2.14e-17 | 73 |
nervous system | 2.37e-17 | 75 |
gray matter | 2.87e-17 | 34 |
neural tube | 1.17e-16 | 52 |
neural rod | 1.17e-16 | 52 |
future spinal cord | 1.17e-16 | 52 |
neural keel | 1.17e-16 | 52 |
neurectoderm | 5.98e-16 | 64 |
neural plate | 5.98e-16 | 64 |
presumptive neural plate | 5.98e-16 | 64 |
structure with developmental contribution from neural crest | 1.07e-15 | 92 |
brain grey matter | 1.99e-14 | 29 |
regional part of telencephalon | 1.99e-14 | 29 |
telencephalon | 1.99e-14 | 29 |
brain | 9.90e-14 | 47 |
future brain | 9.90e-14 | 47 |
regional part of brain | 2.70e-13 | 46 |
anterior neural tube | 1.42e-12 | 40 |
regional part of forebrain | 5.84e-12 | 39 |
forebrain | 5.84e-12 | 39 |
future forebrain | 5.84e-12 | 39 |
pre-chordal neural plate | 1.60e-11 | 49 |
ectoderm-derived structure | 1.05e-10 | 95 |
ectoderm | 1.05e-10 | 95 |
presumptive ectoderm | 1.05e-10 | 95 |
ecto-epithelium | 1.50e-10 | 73 |
cerebral cortex | 6.28e-10 | 21 |
cerebral hemisphere | 6.28e-10 | 21 |
pallium | 6.28e-10 | 21 |
regional part of cerebral cortex | 4.39e-08 | 17 |
occipital lobe | 1.90e-07 | 10 |
visual cortex | 1.90e-07 | 10 |
neocortex | 1.90e-07 | 10 |
tube | 4.39e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.