FFCP PHASE1:Hg19::chr9:129376456..129376465,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4010|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6654|TSSclassifier=S|UniProt=F8W7W6,O60663,F8VYP0,B7ZLH2,Q6ISE0|association_with_transcript=-256bp_to_ENST00000355497,ENST00000373474,ENST00000425646,ENST00000526117,NM_001174146,NM_001174147,NM_002316_5end|coexpression_cluster_id=C136|description=CAGE_peak_5_at_LMX1B_5end|id=chr9:129376456..129376465,+|ontology_enrichment_celltype=CL:0002367!6.69e-14!2;CL:0000214!1.09e-09!3|ontology_enrichment_celltype_v019=CL:0000214;9.45e-18;3!CL:0000153;8.37e-07;9!CL:0000447;8.37e-07;9|ontology_enrichment_celltype_v019_2=CL:0000214,9.46e-18,3;CL:0000153,8.37e-07,9;CL:0000447,8.37e-07,9|ontology_enrichment_development_v019=UBERON:0008801;3.99e-50;1|ontology_enrichment_disease=DOID:5093!1.94e-15!4;DOID:1612!1.94e-15!4;DOID:3119!2.99e-07!14|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005969!6.69e-14!2;UBERON:0003956!6.69e-14!2;UBERON:0006915!1.09e-09!3;UBERON:0002018!1.09e-09!3;UBERON:0002217!1.09e-09!3;UBERON:0007616!1.09e-09!3;UBERON:0001831!5.22e-08!1;UBERON:0001567!5.22e-08!1;UBERON:0008801!5.22e-08!1;UBERON:0002135!1.15e-07!1;UBERON:0001456!1.96e-07!21|ontology_enrichment_uberon_v019=UBERON:0001831;3.99e-50;1!UBERON:0001567;3.99e-50;1!UBERON:0001044;9.87e-34;6!UBERON:0003293;9.87e-34;6!UBERON:0003294;9.87e-34;6!UBERON:0010047;9.87e-34;6!UBERON:0003408;9.87e-34;6!UBERON:0000167;9.87e-34;6!UBERON:0001829;7.14e-26;2!UBERON:0004089;7.14e-26;2!UBERON:0006915;9.45e-18;3!UBERON:0007616;9.45e-18;3!UBERON:0002217;9.45e-18;3!UBERON:0002018;9.45e-18;3!UBERON:0001041;3.66e-15;14!UBERON:0000161;1.81e-11;19!UBERON:0000166;1.81e-11;19!UBERON:0000165;4.06e-08;28!UBERON:0004905;1.69e-07;8!UBERON:0000982;1.69e-07;8!UBERON:0004770;1.69e-07;8!UBERON:0002365;3.69e-07;31!UBERON:0002330;3.69e-07;31!UBERON:0004457;8.37e-07;9!UBERON:0000042;8.37e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0001831,6.58e-50,1;UBERON:0001567,6.58e-50,1;UBERON:0008801,6.58e-50,1;UBERON:0001044,9.87e-34,6;UBERON:0003293,9.87e-34,6;UBERON:0003294,9.87e-34,6;UBERON:0010047,9.87e-34,6;UBERON:0000167,9.87e-34,6;UBERON:0001829,9.18e-26,2;UBERON:0004089,9.18e-26,2;UBERON:0003408,9.44e-21,10;UBERON:0006915,9.46e-18,3;UBERON:0007616,9.46e-18,3;UBERON:0002217,9.46e-18,3;UBERON:0002018,9.46e-18,3;UBERON:0000166,4.74e-10,22;UBERON:0000165,7.15e-08,29;UBERON:0000930,7.15e-08,29;UBERON:0004905,1.69e-07,8;UBERON:0000982,1.69e-07,8;UBERON:0004770,1.69e-07,8;UBERON:0002365,1.99e-07,31;UBERON:0002330,1.99e-07,31|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0.379473173765715,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.76849984088355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09651553371436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500335809236594,0,0,0,0,0,0,0,1.72090943528111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,1.26217249754548,0,0,0,0,0,0,0,0,0.253397002022874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p5@LMX1B}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=4010 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6654 | |||
|TSSclassifier=S | |||
|UniProt=F8W7W6,O60663,F8VYP0,B7ZLH2,Q6ISE0 | |||
|association_with_transcript=-256bp_to_ENST00000355497,ENST00000373474,ENST00000425646,ENST00000526117,NM_001174146,NM_001174147,NM_002316_5end | |||
|coexpression_cluster_id=C136 | |||
|description=CAGE_peak_5_at_LMX1B_5end | |||
|id=chr9:129376456..129376465,+ | |||
|ontology_enrichment_celltype=CL:0002367!6.69e-14!2;CL:0000214!1.09e-09!3 | |||
|ontology_enrichment_celltype_v019=CL:0000214;9.45e-18;3!CL:0000153;8.37e-07;9!CL:0000447;8.37e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000214,9.46e-18,3;CL:0000153,8.37e-07,9;CL:0000447,8.37e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0008801;3.99e-50;1 | |||
|ontology_enrichment_disease=DOID:5093!1.94e-15!4;DOID:1612!1.94e-15!4;DOID:3119!2.99e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005969!6.69e-14!2;UBERON:0003956!6.69e-14!2;UBERON:0006915!1.09e-09!3;UBERON:0002018!1.09e-09!3;UBERON:0002217!1.09e-09!3;UBERON:0007616!1.09e-09!3;UBERON:0001831!5.22e-08!1;UBERON:0001567!5.22e-08!1;UBERON:0008801!5.22e-08!1;UBERON:0002135!1.15e-07!1;UBERON:0001456!1.96e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0001831;3.99e-50;1!UBERON:0001567;3.99e-50;1!UBERON:0001044;9.87e-34;6!UBERON:0003293;9.87e-34;6!UBERON:0003294;9.87e-34;6!UBERON:0010047;9.87e-34;6!UBERON:0003408;9.87e-34;6!UBERON:0000167;9.87e-34;6!UBERON:0001829;7.14e-26;2!UBERON:0004089;7.14e-26;2!UBERON:0006915;9.45e-18;3!UBERON:0007616;9.45e-18;3!UBERON:0002217;9.45e-18;3!UBERON:0002018;9.45e-18;3!UBERON:0001041;3.66e-15;14!UBERON:0000161;1.81e-11;19!UBERON:0000166;1.81e-11;19!UBERON:0000165;4.06e-08;28!UBERON:0004905;1.69e-07;8!UBERON:0000982;1.69e-07;8!UBERON:0004770;1.69e-07;8!UBERON:0002365;3.69e-07;31!UBERON:0002330;3.69e-07;31!UBERON:0004457;8.37e-07;9!UBERON:0000042;8.37e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001831,6.58e-50,1;UBERON:0001567,6.58e-50,1;UBERON:0008801,6.58e-50,1;UBERON:0001044,9.87e-34,6;UBERON:0003293,9.87e-34,6;UBERON:0003294,9.87e-34,6;UBERON:0010047,9.87e-34,6;UBERON:0000167,9.87e-34,6;UBERON:0001829,9.18e-26,2;UBERON:0004089,9.18e-26,2;UBERON:0003408,9.44e-21,10;UBERON:0006915,9.46e-18,3;UBERON:0007616,9.46e-18,3;UBERON:0002217,9.46e-18,3;UBERON:0002018,9.46e-18,3;UBERON:0000166,4.74e-10,22;UBERON:0000165,7.15e-08,29;UBERON:0000930,7.15e-08,29;UBERON:0004905,1.69e-07,8;UBERON:0000982,1.69e-07,8;UBERON:0004770,1.69e-07,8;UBERON:0002365,1.99e-07,31;UBERON:0002330,1.99e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0.790204397959275,0.858486162094873,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0.379473173765715,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.76849984088355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09651553371436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500335809236594,0,0,0,0,0,0,0,1.72090943528111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,1.26217249754548,0,0,0,0,0,0,0,0,0.253397002022874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p5@LMX1B | |||
}} |
Revision as of 07:28, 14 September 2013
Short description: | p5@LMX1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_LMX1B_5end |
Coexpression cluster: | C136_Wilms_extraskeletal_anaplastic_rhabdomyosarcoma_cholangiocellular_nonsmall_neuroectodermal |
Association with transcript: | -256bp_to_ENST00000355497, ENST00000373474, ENST00000425646, ENST00000526117, NM_001174146, NM_001174147, NM_002316_5end |
EntrezGene: | LMX1B |
HGNC: | 6654 |
UniProt: | F8W7W6O60663F8VYP0B7ZLH2Q6ISE0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
synovial cell | 9.46e-18 | 3 |
GAG secreting cell | 8.37e-07 | 9 |
carbohydrate secreting cell | 8.37e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
parotid gland | 6.58e-50 | 1 |
cheek | 6.58e-50 | 1 |
parotid gland primordium | 6.58e-50 | 1 |
saliva-secreting gland | 9.87e-34 | 6 |
gland of oral region | 9.87e-34 | 6 |
gland of foregut | 9.87e-34 | 6 |
oral gland | 9.87e-34 | 6 |
oral cavity | 9.87e-34 | 6 |
major salivary gland | 9.18e-26 | 2 |
midface | 9.18e-26 | 2 |
gland of gut | 9.44e-21 | 10 |
stratified squamous epithelium | 9.46e-18 | 3 |
layer of synovial tissue | 9.46e-18 | 3 |
synovial joint | 9.46e-18 | 3 |
synovial membrane of synovial joint | 9.46e-18 | 3 |
oral opening | 4.74e-10 | 22 |
mouth | 7.15e-08 | 29 |
stomodeum | 7.15e-08 | 29 |
articulation | 1.69e-07 | 8 |
skeletal joint | 1.69e-07 | 8 |
articular system | 1.69e-07 | 8 |
exocrine gland | 1.99e-07 | 31 |
exocrine system | 1.99e-07 | 31 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.