FFCP PHASE1:Hg19::chr9:123165748..123165770,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55755|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18672|TSSclassifier=S|UniProt=|association_with_transcript=2bp_to_ENST00000480467_5end|coexpression_cluster_id=C125|description=CAGE_peak_5_at_CDK5RAP2_5end|id=chr9:123165748..123165770,-|ontology_enrichment_celltype=CL:0002194!3.68e-26!63;CL:0000576!3.68e-26!63;CL:0000040!3.68e-26!63;CL:0000559!3.68e-26!63;CL:0002009!5.82e-25!65;CL:0000766!2.15e-22!76;CL:0000839!2.84e-22!70;CL:0000557!8.80e-22!71;CL:0000860!1.03e-21!45;CL:0002057!5.58e-21!42;CL:0000763!1.01e-12!112;CL:0000049!1.01e-12!112;CL:0002087!3.54e-11!119;CL:0002031!1.17e-09!124;CL:0000738!4.04e-09!140|ontology_enrichment_celltype_v019=CL:0000860;2.12e-37;33!CL:0002057;2.12e-37;33!CL:0000473;7.29e-32;39!CL:0000234;7.29e-32;39!CL:0000576;1.12e-24;48!CL:0000766;5.22e-16;69!CL:0000763;3.41e-08;100!CL:0002619;4.88e-08;3!CL:0000319;4.09e-07;1!CL:0002087;7.27e-07;104|ontology_enrichment_celltype_v019_2=CL:0000860,3.34e-33,42;CL:0002057,3.34e-33,42;CL:0000473,4.05e-32,48;CL:0000234,4.05e-32,48;CL:0002194,3.98e-31,59;CL:0000576,3.98e-31,59;CL:0000040,3.98e-31,59;CL:0000559,3.98e-31,59;CL:0002009,5.60e-30,61;CL:0000766,1.21e-27,72;CL:0000839,2.08e-27,66;CL:0000557,6.13e-27,67;CL:0000763,5.68e-17,108;CL:0000049,5.68e-17,108;CL:0002087,1.09e-15,115;CL:0002031,7.55e-15,120;CL:0000738,4.42e-14,136;CL:0002032,3.61e-11,161;CL:0000837,3.61e-11,161;CL:0000988,7.33e-11,177;CL:0000037,1.65e-10,168;CL:0002619,6.26e-08,3;CL:0000319,4.09e-07,1|ontology_enrichment_development_v019=CL:0002057;3.70e-28;42!CL:0000049;9.04e-07;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3030;4.09e-07;1|ontology_enrichment_disease_v019_2=DOID:3030,4.09e-07,1|ontology_enrichment_uberon=UBERON:0002390!6.85e-24!102;UBERON:0003061!6.85e-24!102;UBERON:0002371!2.21e-20!80;UBERON:0002193!2.49e-20!112;UBERON:0001474!3.37e-19!86;UBERON:0004765!1.98e-16!101;UBERON:0001434!1.98e-16!101;UBERON:0002405!2.69e-15!115;UBERON:0002204!1.95e-11!167;UBERON:0003081!2.85e-07!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.69e-26,76;UBERON:0001474,1.38e-23,82;UBERON:0004765,2.15e-23,90;UBERON:0002390,2.55e-23,98;UBERON:0003061,2.55e-23,98;UBERON:0002193,1.02e-20,108;UBERON:0001434,1.35e-20,100;UBERON:0002405,2.79e-20,93;UBERON:0002204,1.23e-11,167;UBERON:0003081,9.38e-09,203|phase1_expression=0,0,0,0,0.893922188854576,0,0,0.631719873426831,0,0,0,0,0,0,0.994192127183747,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0,0,0,0.30120591877825,0,0,0,0,0,0,0,1.11957737119962,0.971680998056939,2.31818010870768,0.581592955118259,0.755751887377619,0,1.39457422143411,2.87817521615278,0.309706370895104,3.16461631554365,1.7931249457037,0.709446689665756,1.03423704220986,1.29096936716765,1.35426486594342,0.376484679085209,1.63743690034707,0.449446968890169,0.918251677112708,0.320929027076094,0,3.62836430205388,1.39624560335142,0,1.7412554317715,3.40431134814684,2.4912889959823,2.26123798731069,0.521482918420201,0.65156653411535,3.63239701580021,2.94622108790052,3.16462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0.50133791063589,0.289693037921647,0,0,0,0,0,0.130979075497713,0,0,0.649094787309367,0.696518949197069,0.26591592103773,0,0,0,0.198762407366705,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05965950579781,0,0.103052529238439,0,0,0,0,0,0.184099797284599,0.323292113637624,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0.246217006087397,1.17002132569619,0.594524649154913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02882949704857,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,1.02738161275192,0,0,0,0,0,0,0,0,0,0,0,0,3.31532410748828,1.59498939234882,0.500170521059677,0.271265023699736,0.207970861530807,0,0.157702415033935,0,0,0,0,0,0.184369168541703,0,1.37060810223918,0,0,0,0.106727557803444,0,0,0,0,0,0.561320188866147,0,0,0,0,0,0,0.0821271560138091,0,0.232420756919918,0.120859449591622,0,0,0,0,0.655622074797121,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0.107420244868274,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0.190630193923825,0,0,0,0,0,0,0.117812402345686,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0.282431402330337,0,0,0,0,1.52234282769651,0.764637207142375,0,0.714695326373367,0.411362273086194,0.648473311192717,1.62009431171434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0.307240764308458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27372397525631,0,0,0,0,0,0,0,0,1.6111905720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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55755 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18672 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=2bp_to_ENST00000480467_5end | |||
|coexpression_cluster_id=C125 | |||
|description=CAGE_peak_5_at_CDK5RAP2_5end | |||
|id=chr9:123165748..123165770,- | |||
|ontology_enrichment_celltype=CL:0002194!3.68e-26!63;CL:0000576!3.68e-26!63;CL:0000040!3.68e-26!63;CL:0000559!3.68e-26!63;CL:0002009!5.82e-25!65;CL:0000766!2.15e-22!76;CL:0000839!2.84e-22!70;CL:0000557!8.80e-22!71;CL:0000860!1.03e-21!45;CL:0002057!5.58e-21!42;CL:0000763!1.01e-12!112;CL:0000049!1.01e-12!112;CL:0002087!3.54e-11!119;CL:0002031!1.17e-09!124;CL:0000738!4.04e-09!140 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.12e-37;33!CL:0002057;2.12e-37;33!CL:0000473;7.29e-32;39!CL:0000234;7.29e-32;39!CL:0000576;1.12e-24;48!CL:0000766;5.22e-16;69!CL:0000763;3.41e-08;100!CL:0002619;4.88e-08;3!CL:0000319;4.09e-07;1!CL:0002087;7.27e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.34e-33,42;CL:0002057,3.34e-33,42;CL:0000473,4.05e-32,48;CL:0000234,4.05e-32,48;CL:0002194,3.98e-31,59;CL:0000576,3.98e-31,59;CL:0000040,3.98e-31,59;CL:0000559,3.98e-31,59;CL:0002009,5.60e-30,61;CL:0000766,1.21e-27,72;CL:0000839,2.08e-27,66;CL:0000557,6.13e-27,67;CL:0000763,5.68e-17,108;CL:0000049,5.68e-17,108;CL:0002087,1.09e-15,115;CL:0002031,7.55e-15,120;CL:0000738,4.42e-14,136;CL:0002032,3.61e-11,161;CL:0000837,3.61e-11,161;CL:0000988,7.33e-11,177;CL:0000037,1.65e-10,168;CL:0002619,6.26e-08,3;CL:0000319,4.09e-07,1 | |||
|ontology_enrichment_development_v019=CL:0002057;3.70e-28;42!CL:0000049;9.04e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3030;4.09e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,4.09e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!6.85e-24!102;UBERON:0003061!6.85e-24!102;UBERON:0002371!2.21e-20!80;UBERON:0002193!2.49e-20!112;UBERON:0001474!3.37e-19!86;UBERON:0004765!1.98e-16!101;UBERON:0001434!1.98e-16!101;UBERON:0002405!2.69e-15!115;UBERON:0002204!1.95e-11!167;UBERON:0003081!2.85e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.69e-26,76;UBERON:0001474,1.38e-23,82;UBERON:0004765,2.15e-23,90;UBERON:0002390,2.55e-23,98;UBERON:0003061,2.55e-23,98;UBERON:0002193,1.02e-20,108;UBERON:0001434,1.35e-20,100;UBERON:0002405,2.79e-20,93;UBERON:0002204,1.23e-11,167;UBERON:0003081,9.38e-09,203 | |||
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|short_description=p5@CDK5RAP2 | |||
}} |
Revision as of 07:14, 14 September 2013
Short description: | p5@CDK5RAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_CDK5RAP2_5end |
Coexpression cluster: | C125_mucinous_alveolar_mesothelioma_Smooth_lung_CD14_Nucleus |
Association with transcript: | 2bp_to_ENST00000480467_5end |
EntrezGene: | CDK5RAP2 |
HGNC: | 18672 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.34e-33 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.34e-33 | 42 |
defensive cell | 4.05e-32 | 48 |
phagocyte | 4.05e-32 | 48 |
monopoietic cell | 3.98e-31 | 59 |
monocyte | 3.98e-31 | 59 |
monoblast | 3.98e-31 | 59 |
promonocyte | 3.98e-31 | 59 |
macrophage dendritic cell progenitor | 5.60e-30 | 61 |
myeloid leukocyte | 1.21e-27 | 72 |
myeloid lineage restricted progenitor cell | 2.08e-27 | 66 |
granulocyte monocyte progenitor cell | 6.13e-27 | 67 |
myeloid cell | 5.68e-17 | 108 |
common myeloid progenitor | 5.68e-17 | 108 |
nongranular leukocyte | 1.09e-15 | 115 |
hematopoietic lineage restricted progenitor cell | 7.55e-15 | 120 |
leukocyte | 4.42e-14 | 136 |
hematopoietic oligopotent progenitor cell | 3.61e-11 | 161 |
hematopoietic multipotent progenitor cell | 3.61e-11 | 161 |
hematopoietic cell | 7.33e-11 | 177 |
hematopoietic stem cell | 1.65e-10 | 168 |
adult endothelial progenitor cell | 6.26e-08 | 3 |
mucus secreting cell | 4.09e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.69e-26 | 76 |
bone element | 1.38e-23 | 82 |
skeletal element | 2.15e-23 | 90 |
hematopoietic system | 2.55e-23 | 98 |
blood island | 2.55e-23 | 98 |
hemolymphoid system | 1.02e-20 | 108 |
skeletal system | 1.35e-20 | 100 |
immune system | 2.79e-20 | 93 |
musculoskeletal system | 1.23e-11 | 167 |
lateral plate mesoderm | 9.38e-09 | 203 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 4.09e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.