FFCP PHASE1:Mm9::chr5:137974525..137974539,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14693|HGNC=|MCL_coexpression_id=3507|UniProt=D3YZX3|association_with_transcript=0bp_to_ENSMUST00000111020,ENSMUST00000111023_5end|description=CAGE_peak_3_at_Gnb2_5end|id=chr5:137974525..137974539,-|ontology_enrichment_celltype=CL:0002319!1.02e-15!43;CL:0000221!1.47e-15!44;CL:0000133!1.47e-15!44;CL:0000055!1.27e-14!50;CL:0000117!1.04e-11!23;CL:0000337!1.04e-11!23;CL:0002321!1.11e-11!70;CL:0000220!1.11e-11!70;CL:0000540!3.49e-11!33;CL:0000047!3.49e-11!33;CL:0000031!3.49e-11!33;CL:0000404!3.49e-11!33;CL:0000393!8.51e-11!39;CL:0000211!8.51e-11!39|ontology_enrichment_celltype_v019_2=CL:0002319,1.02e-15,43;CL:0000221,1.47e-15,44;CL:0000133,1.47e-15,44;CL:0000117,1.04e-11,23;CL:0000337,1.04e-11,23;CL:0002321,1.11e-11,70;CL:0000540,3.49e-11,33;CL:0000047,3.49e-11,33;CL:0000031,3.49e-11,33;CL:0000404,3.49e-11,33;CL:0000393,8.51e-11,39;CL:0000211,8.51e-11,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.72e-23!73;UBERON:0005743!1.72e-23!73;UBERON:0000073!2.02e-23!75;UBERON:0001016!2.02e-23!75;UBERON:0001049!4.31e-18!52;UBERON:0005068!4.31e-18!52;UBERON:0006241!4.31e-18!52;UBERON:0007135!4.31e-18!52;UBERON:0004121!7.69e-17!102;UBERON:0000924!7.69e-17!102;UBERON:0006601!7.69e-17!102;UBERON:0002020!8.09e-17!34;UBERON:0002780!1.27e-16!39;UBERON:0001890!1.27e-16!39;UBERON:0006240!1.27e-16!39;UBERON:0003080!1.59e-16!40;UBERON:0002616!1.65e-16!49;UBERON:0000955!1.85e-16!50;UBERON:0006238!1.85e-16!50;UBERON:0002346!1.13e-15!71;UBERON:0003075!1.13e-15!71;UBERON:0007284!1.13e-15!71;UBERON:0002791!4.38e-14!29;UBERON:0003528!4.38e-14!29;UBERON:0001893!4.38e-14!29;UBERON:0000033!2.88e-13!63;UBERON:0003056!3.34e-13!49;UBERON:0000956!2.45e-10!21;UBERON:0001869!2.45e-10!21;UBERON:0000203!2.45e-10!21;UBERON:0002619!9.35e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.72e-23,73;UBERON:0001016,2.02e-23,75;UBERON:0000073,2.72e-19,54;UBERON:0001049,4.31e-18,52;UBERON:0005068,4.31e-18,52;UBERON:0006241,4.31e-18,52;UBERON:0007135,4.31e-18,52;UBERON:0002020,8.09e-17,34;UBERON:0002780,1.27e-16,39;UBERON:0001890,1.27e-16,39;UBERON:0006240,1.27e-16,39;UBERON:0003080,1.59e-16,40;UBERON:0004121,4.40e-16,95;UBERON:0000924,4.40e-16,95;UBERON:0006601,4.40e-16,95;UBERON:0002616,8.28e-16,46;UBERON:0000955,9.38e-16,47;UBERON:0006238,9.38e-16,47;UBERON:0002346,3.46e-15,64;UBERON:0003075,3.46e-15,64;UBERON:0007284,3.46e-15,64;UBERON:0003528,4.38e-14,29;UBERON:0002791,4.38e-14,29;UBERON:0001893,4.38e-14,29;UBERON:0003056,3.34e-13,49;UBERON:0010314,1.34e-11,92;UBERON:0010371,5.56e-11,73;UBERON:0000956,2.45e-10,21;UBERON:0001869,2.45e-10,21;UBERON:0000203,2.45e-10,21;UBERON:0002619,9.35e-09,17|phase1_expression=7.52699581392532,15.3549179361319,16.3799726180233,13.9133537201142,14.5259761684441,7.55456723603504,5.37309073369709,4.26106967357202,2.956563165185,4.21316147379588,1.19852577757853,1.03703806693937,3.0816131387617,3.3219752919219,2.6648780945253,3.84703008040669,2.79824751251259,4.57420139769445,3.01651753932625,4.2438965179803,8.07911256435163,5.85816612085223,2.08959831311148,6.87967418011649,7.34109699414944,17.2269589234506,8.61523992318149,10.7735616342945,5.13063232532209,4.78857246543868,9.3126814475228,5.08024538767705,3.69038872550742,0,2.59966457776147,3.15845826181135,3.26670970019791,40.1790365507431,42.1921086042852,38.7407570540611,47.6467505305122,47.1301384621327,57.7757320107073,4.15459499319405,5.98123894195136,7.70896359079063,32.8604364626176,31.6136476751647,30.0970070346226,28.5811951639197,17.6382891247957,43.1257693094915,5.5368259999053,6.5282592781021,4.03312558970957,16.2073444702647,15.7593391966316,14.4388185837684,30.5497855897993,32.268449735594,27.8885817542719,25.0744953731158,26.6788438833342,40.495487277663,48.4544517657817,52.5755285060114,44.3408163567239,59.553837324841,18.9751990524514,23.7610451463776,20.6118462124354,30.2790043468032,30.7007271922743,22.5383070555515,26.2616590589968,22.9804696652505,9.91042928994498,13.0241084846891,12.7493422602682,29.938187314754,38.7907608874217,28.129322010065,16.4717969410815,12.380777420697,18.0301932376636,20.0347438122094,21.4981238006645,25.7231235238915,8.32988126665025,8.23730005163962,4.92769630792852,5.16254326188832,6.79971333707751,5.39703191637817,3.24888208723835,2.24013443548668,6.60088774619234,7.83979483859066,8.83272415649754,10.2468476607999,7.88723150749411,10.2661181931454,15.2883143823987,42.6640021891999,8.65964164044856,9.12095515710355,8.08839112023653,3.88225191044804,4.14300613835475,5.19547486726887,14.2257967948231,10.6562917409249,14.2981608298756,12.8114244469729,5.29149182110672,12.4409925416379,7.66304399976559,3.47038456607788,15.9229899350977,4.52947179852746,6.18356251689102,2.90925151881133,9.31958806090611,4.39171195517321,5.02672096352292,6.89734049063197,4.19352935770721,4.19931911695385,6.22644112658017,8.38827580667007,19.2150253183823,23.7486725493314,12.3415267336516,15.0872119824895,13.714010940931,13.6282660976916,5.70300437561771,3.73220911830279,4.80173241023982,6.10281382070775,7.80722657776222,11.7250073261071,6.84236093260327,8.59017461663576,4.69451844144162,5.38077625196369,8.80796210861451,2.06962696591213,6.46703978798527,6.24050064553804,7.2139960907219,9.42541649438572,5.56094498451196,5.57203466435466,6.58502836505419,8.55847347319521,4.91549231119264,7.97778512055617,10.2298859782413,12.0132948070591,5.39409937956521,9.00310307305074,6.62885259638589,6.88674811115913,9.41029388613007,4.65067889500816,7.24338183778972,3.61972561338225,5.59503489705834,4.92502392237286,3.32382119138008,4.5321996101853,5.26920276698522,2.81833479396781,13.0379768109759,15.2298826321341,8.59088835757875,6.08236303326152,4.90562976231038,9.28946687441754,6.05677068213839,7.66397393568702,12.2307924114679,11.9842144450912,7.11793592316767,4.94096864172033,6.03204501120647,5.37182474511107,6.04388670069272,8.08937467788799,4.75503709724327,6.57166201739412,11.7594098590911,7.08340778180319,5.63538678365402,5.29493452397817,7.5641469995374,4.69909993265134,4.3000845244495,4.13308414342886,3.767969468193,3.94870924549762,3.26097889795864,5.5058884886311,7.86235980452812,5.39669069723649,6.49152388443209,10.1294407096015,6.87489799809833,6.32931502391783,2.7562988551756,3.56929837144506,23.0029130443767,5.58211421502755,4.36852742360385,2.27320990152401,3.94674309748207,3.37710464954357,5.35784251483154,9.09558776498327,5.0519142697028,4.58311731593008,5.39787571063555,9.21284415929987,7.85544014923845,7.41507861859636,3.94087860265477,5.09368786192182,7.01600982092943,5.89907932976657,5.35323443784276,5.49666422609744,16.5870412333199,13.5976420954677,10.8188140064188,4.13905119457099,7.38532713943843,9.02529986759964,4.42624352517024,3.02965112645248,7.57219726599016,10.5418460960092,8.18608911384636,8.12493913038677,8.91194696329577,10.7569081699756,8.90583543684768,8.76767573733936,11.0680577825027,8.35435422696698,4.5420827266646,13.7110514823787,6.18970445543589,5.60898418106621,5.30980553359851,6.5550771761845,8.76738315197778,6.97838795096823,9.7449624650655,9.83792473420568,6.97756391554197,3.63533729477506,2.49548164869305,5.37262488490887,3.16255825724996,8.25084345985495,10.8940673841212,10.0834212657534,12.0303575917962,12.2172109968008,11.3497749531055,18.5503570306153,14.6448628335888,13.700922710157,22.0591405579888,22.8778636532926,10.1443063105282,4.78170133530292,2.42196640043858,3.43783672090488,3.58117032009409,1.14898629821543,5.24665505933731,6.11903496634682,6.4930934703184,9.28740905834501,5.55583582109135,4.33247451110789,3.55404992074665,4.34678529092393,4.58941760983409,5.45810664062266,5.11339903076368,4.77335309007557,7.59206384594725,6.30290348093231,3.56417624711944,5.22720740036172,6.76923947613151,5.66430254816247,4.54594006489348,8.63794608547298,6.61036363788144,13.6694648879124,4.50954350947352,8.82147621659475,9.76205093696876,9.33365704051429,11.3660644660403,11.1511042823914,5.75050469364194,6.77062801188541,3.77493639932559,3.38217769156408,4.89651010638371,5.05617793005085,8.31173382689673,7.08705604437308,6.23619950293416,4.29664069601955,5.16571522431289,5.64918612743854,4.13530676088816,4.34155734777035,2.74344503957999,3.2264379243789,4.0932309910696,4.32953287381483,2.68816875017609,4.98806843953465,17.314904363177,16.597063472753,23.3359616746069,2.51146472241848,8.44571139530319,5.67770035228522,6.21668299329291,6.01886524842436,23.1548255472997,24.8575627713876,18.3326564300607,20.9660882459299,28.0883833105963,13.5970901530146,20.925697507186,15.3109209096235,16.7662691324156,20.192652158321,10.0673727156651,9.17757208822371,10.0732827394939,10.2104821168684,11.319110781911,11.5821410323509,8.22312892865976,7.41726206060019,6.4183841918363,6.82282471762253,6.84394109703647,8.29955902098735,7.58496210506047,7.23484222175023,8.27070752960831,8.09699275181225,8.11190281613988,7.5234595980845,7.41754621445952,6.03515572551029,4.4573002810104,8.34136288948886,9.29901140794552,7.41266724824875,6.11710972699649,7.61531471025089,8.23175877927476,5.5244639401947,7.06181391998481,7.85599180320834,7.11810108745045,8.86540341380071,6.54769669071503,8.98633678878603,8.48789088317022,10.9916654292696,7.71974307869848,4.08255002691767,4.78220830172108,5.29419405886837,3.94175320554716|short_description=p3@Gnb2}} | ||
|EntrezGene=14693 | |||
|HGNC= | |||
|MCL_coexpression_id=3507 | |||
|UniProt=D3YZX3 | |||
|association_with_transcript=0bp_to_ENSMUST00000111020,ENSMUST00000111023_5end | |||
|description=CAGE_peak_3_at_Gnb2_5end | |||
|id=chr5:137974525..137974539,- | |||
|ontology_enrichment_celltype=CL:0002319!1.02e-15!43;CL:0000221!1.47e-15!44;CL:0000133!1.47e-15!44;CL:0000055!1.27e-14!50;CL:0000117!1.04e-11!23;CL:0000337!1.04e-11!23;CL:0002321!1.11e-11!70;CL:0000220!1.11e-11!70;CL:0000540!3.49e-11!33;CL:0000047!3.49e-11!33;CL:0000031!3.49e-11!33;CL:0000404!3.49e-11!33;CL:0000393!8.51e-11!39;CL:0000211!8.51e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.02e-15,43;CL:0000221,1.47e-15,44;CL:0000133,1.47e-15,44;CL:0000117,1.04e-11,23;CL:0000337,1.04e-11,23;CL:0002321,1.11e-11,70;CL:0000540,3.49e-11,33;CL:0000047,3.49e-11,33;CL:0000031,3.49e-11,33;CL:0000404,3.49e-11,33;CL:0000393,8.51e-11,39;CL:0000211,8.51e-11,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.72e-23!73;UBERON:0005743!1.72e-23!73;UBERON:0000073!2.02e-23!75;UBERON:0001016!2.02e-23!75;UBERON:0001049!4.31e-18!52;UBERON:0005068!4.31e-18!52;UBERON:0006241!4.31e-18!52;UBERON:0007135!4.31e-18!52;UBERON:0004121!7.69e-17!102;UBERON:0000924!7.69e-17!102;UBERON:0006601!7.69e-17!102;UBERON:0002020!8.09e-17!34;UBERON:0002780!1.27e-16!39;UBERON:0001890!1.27e-16!39;UBERON:0006240!1.27e-16!39;UBERON:0003080!1.59e-16!40;UBERON:0002616!1.65e-16!49;UBERON:0000955!1.85e-16!50;UBERON:0006238!1.85e-16!50;UBERON:0002346!1.13e-15!71;UBERON:0003075!1.13e-15!71;UBERON:0007284!1.13e-15!71;UBERON:0002791!4.38e-14!29;UBERON:0003528!4.38e-14!29;UBERON:0001893!4.38e-14!29;UBERON:0000033!2.88e-13!63;UBERON:0003056!3.34e-13!49;UBERON:0000956!2.45e-10!21;UBERON:0001869!2.45e-10!21;UBERON:0000203!2.45e-10!21;UBERON:0002619!9.35e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.72e-23,73;UBERON:0001016,2.02e-23,75;UBERON:0000073,2.72e-19,54;UBERON:0001049,4.31e-18,52;UBERON:0005068,4.31e-18,52;UBERON:0006241,4.31e-18,52;UBERON:0007135,4.31e-18,52;UBERON:0002020,8.09e-17,34;UBERON:0002780,1.27e-16,39;UBERON:0001890,1.27e-16,39;UBERON:0006240,1.27e-16,39;UBERON:0003080,1.59e-16,40;UBERON:0004121,4.40e-16,95;UBERON:0000924,4.40e-16,95;UBERON:0006601,4.40e-16,95;UBERON:0002616,8.28e-16,46;UBERON:0000955,9.38e-16,47;UBERON:0006238,9.38e-16,47;UBERON:0002346,3.46e-15,64;UBERON:0003075,3.46e-15,64;UBERON:0007284,3.46e-15,64;UBERON:0003528,4.38e-14,29;UBERON:0002791,4.38e-14,29;UBERON:0001893,4.38e-14,29;UBERON:0003056,3.34e-13,49;UBERON:0010314,1.34e-11,92;UBERON:0010371,5.56e-11,73;UBERON:0000956,2.45e-10,21;UBERON:0001869,2.45e-10,21;UBERON:0000203,2.45e-10,21;UBERON:0002619,9.35e-09,17 | |||
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| |||
|short_description=p3@Gnb2 | |||
}} |
Revision as of 06:46, 14 September 2013
Short description: | p3@Gnb2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gnb2_5end |
Coexpression cluster: | MCL_coexpression_mm9:3507 |
Association with transcript: | 0bp_to_ENSMUST00000111020, ENSMUST00000111023_5end |
EntrezGene: | Gnb2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.02e-15 | 43 |
ectodermal cell | 1.47e-15 | 44 |
neurectodermal cell | 1.47e-15 | 44 |
CNS neuron (sensu Vertebrata) | 1.04e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.04e-11 | 23 |
embryonic cell | 1.11e-11 | 70 |
neuron | 3.49e-11 | 33 |
neuronal stem cell | 3.49e-11 | 33 |
neuroblast | 3.49e-11 | 33 |
electrically signaling cell | 3.49e-11 | 33 |
electrically responsive cell | 8.51e-11 | 39 |
electrically active cell | 8.51e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.72e-23 | 73 |
nervous system | 2.02e-23 | 75 |
regional part of nervous system | 2.72e-19 | 54 |
neural tube | 4.31e-18 | 52 |
neural rod | 4.31e-18 | 52 |
future spinal cord | 4.31e-18 | 52 |
neural keel | 4.31e-18 | 52 |
gray matter | 8.09e-17 | 34 |
regional part of forebrain | 1.27e-16 | 39 |
forebrain | 1.27e-16 | 39 |
future forebrain | 1.27e-16 | 39 |
anterior neural tube | 1.59e-16 | 40 |
ectoderm-derived structure | 4.40e-16 | 95 |
ectoderm | 4.40e-16 | 95 |
presumptive ectoderm | 4.40e-16 | 95 |
regional part of brain | 8.28e-16 | 46 |
brain | 9.38e-16 | 47 |
future brain | 9.38e-16 | 47 |
neurectoderm | 3.46e-15 | 64 |
neural plate | 3.46e-15 | 64 |
presumptive neural plate | 3.46e-15 | 64 |
brain grey matter | 4.38e-14 | 29 |
regional part of telencephalon | 4.38e-14 | 29 |
telencephalon | 4.38e-14 | 29 |
pre-chordal neural plate | 3.34e-13 | 49 |
structure with developmental contribution from neural crest | 1.34e-11 | 92 |
ecto-epithelium | 5.56e-11 | 73 |
cerebral cortex | 2.45e-10 | 21 |
cerebral hemisphere | 2.45e-10 | 21 |
pallium | 2.45e-10 | 21 |
regional part of cerebral cortex | 9.35e-09 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.