FFCP PHASE1:Mm9::chr5:117807283..117807364,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=59043|HGNC=|UniProt=O54929|association_with_transcript=0bp_to_ENSMUST00000031309,ENSMUST00000125522,NM_021539,uc008zfq.1_5end|description=CAGE_peak_1_at_Wsb2_5end|id=chr5:117807283..117807364,+|ontology_enrichment_celltype=CL:0000055!5.56e-12!50;CL:0000117!6.15e-12!23;CL:0000337!6.15e-12!23;CL:0002321!1.45e-11!70;CL:0000220!1.45e-11!70;CL:0000221!6.37e-11!44;CL:0000133!6.37e-11!44;CL:0002319!9.63e-11!43;CL:0000393!1.58e-08!39;CL:0000211!1.58e-08!39;CL:0000540!1.09e-07!33;CL:0000047!1.09e-07!33;CL:0000031!1.09e-07!33;CL:0000404!1.09e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,6.15e-12,23;CL:0000337,6.15e-12,23;CL:0002321,1.45e-11,70;CL:0000221,6.37e-11,44;CL:0000133,6.37e-11,44;CL:0002319,9.63e-11,43;CL:0000393,1.58e-08,39;CL:0000211,1.58e-08,39;CL:0000540,1.09e-07,33;CL:0000047,1.09e-07,33;CL:0000031,1.09e-07,33;CL:0000404,1.09e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.85e-20!75;UBERON:0001016!4.85e-20!75;UBERON:0001017!7.59e-19!73;UBERON:0005743!7.59e-19!73;UBERON:0001049!2.15e-18!52;UBERON:0005068!2.15e-18!52;UBERON:0006241!2.15e-18!52;UBERON:0007135!2.15e-18!52;UBERON:0002020!5.04e-18!34;UBERON:0000955!2.16e-16!50;UBERON:0006238!2.16e-16!50;UBERON:0002616!3.20e-16!49;UBERON:0004121!1.80e-15!102;UBERON:0000924!1.80e-15!102;UBERON:0006601!1.80e-15!102;UBERON:0002791!1.03e-14!29;UBERON:0003528!1.03e-14!29;UBERON:0001893!1.03e-14!29;UBERON:0002346!1.27e-13!71;UBERON:0003075!1.27e-13!71;UBERON:0007284!1.27e-13!71;UBERON:0003080!1.60e-13!40;UBERON:0002780!3.05e-13!39;UBERON:0001890!3.05e-13!39;UBERON:0006240!3.05e-13!39;UBERON:0000033!5.51e-12!63;UBERON:0000956!1.71e-10!21;UBERON:0001869!1.71e-10!21;UBERON:0000203!1.71e-10!21;UBERON:0002619!1.85e-09!17;UBERON:0003056!4.93e-09!49;UBERON:0000025!1.40e-07!114;UBERON:0004111!1.46e-07!122;UBERON:0002021!4.10e-07!10;UBERON:0000411!4.10e-07!10;UBERON:0001950!4.10e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.85e-20,75;UBERON:0000073,1.80e-19,54;UBERON:0001017,7.59e-19,73;UBERON:0001049,2.15e-18,52;UBERON:0005068,2.15e-18,52;UBERON:0006241,2.15e-18,52;UBERON:0007135,2.15e-18,52;UBERON:0002020,5.04e-18,34;UBERON:0010314,3.31e-15,92;UBERON:0000955,4.30e-15,47;UBERON:0006238,4.30e-15,47;UBERON:0002616,6.33e-15,46;UBERON:0003528,1.03e-14,29;UBERON:0002791,1.03e-14,29;UBERON:0001893,1.03e-14,29;UBERON:0004121,4.36e-14,95;UBERON:0000924,4.36e-14,95;UBERON:0006601,4.36e-14,95;UBERON:0003080,1.60e-13,40;UBERON:0002780,3.05e-13,39;UBERON:0001890,3.05e-13,39;UBERON:0006240,3.05e-13,39;UBERON:0002346,2.07e-12,64;UBERON:0003075,2.07e-12,64;UBERON:0007284,2.07e-12,64;UBERON:0000956,1.71e-10,21;UBERON:0001869,1.71e-10,21;UBERON:0000203,1.71e-10,21;UBERON:0010371,3.83e-10,73;UBERON:0002619,1.85e-09,17;UBERON:0003056,4.93e-09,49;UBERON:0000025,1.40e-07,114;UBERON:0004111,1.46e-07,122;UBERON:0002021,4.10e-07,10;UBERON:0000411,4.10e-07,10;UBERON:0001950,4.10e-07,10|phase1_expression=35.8733417514738,146.569671208532,178.359701840698,144.880357215972,160.787529312777,82.5966017806498,75.6904955529503,22.3383349553927,48.7128978644767,41.1953566326709,15.2383991720699,17.2307863429927,18.6608795625014,19.1450681297604,17.6548173762301,15.9955461237963,12.5921138063066,21.9246204923975,19.6073640056206,22.4926515452956,42.9468615262902,7.4468213400664,7.83599367416806,62.7170297350154,73.6403792225616,132.073351746455,106.828975047451,94.5918711491053,61.3775644844088,57.4628695852642,77.8274092400119,48.262331182932,35.6737576799051,63.3926724061755,18.4865036640816,20.94556531517,21.029443695024,48.1311375347444,35.160090503571,30.3643771504803,47.0585190424811,61.4740936462601,47.5800145970531,36.8877676668441,37.6108414824399,49.557623083654,64.9384815808872,75.6547292640149,65.6861686376071,60.4676986121021,67.0534959585487,71.8762821824858,28.8586082419307,18.859415692295,12.4354705682712,88.7545054324017,79.6562963029744,75.2881254725066,97.9211670560453,108.443150750767,120.427966666174,94.1987799152187,64.9185201161132,74.6916765343561,73.1761108299561,80.9947331038554,62.916023208865,38.0376122268339,56.4071490958118,59.2676069276122,54.8948149127107,139.68333137346,135.392415603339,69.0848107572341,62.5870925749083,75.3759405020217,72.6764814595965,76.867777527283,74.4991686292781,104.322053594583,101.459796755072,94.2853200707736,72.8667627393604,97.9206941455123,88.4701854627731,130.225834779361,118.168495063255,100.842100191488,120.707552173095,90.6858721281426,48.4073696131802,67.1130624045481,49.6379073606658,38.318926606285,37.0372557945171,35.8421509677868,42.5546592999208,36.6425193542824,36.6298266490045,43.8141072392822,52.3937521569251,42.3477375467249,45.8649431471962,85.3280043783997,29.0097994955027,26.3494260094103,32.8590889259609,39.8501740219519,8.54495016035667,49.8765587257811,40.5955664632758,54.1948551395611,64.1111082371843,58.9325524560754,45.2716522472464,54.9163004110682,42.0231445148436,19.8101118980279,23.8844849026466,40.2799456369049,29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| ||
|EntrezGene=59043 | |||
|HGNC= | |||
|UniProt=O54929 | |||
|association_with_transcript=0bp_to_ENSMUST00000031309,ENSMUST00000125522,NM_021539,uc008zfq.1_5end | |||
|description=CAGE_peak_1_at_Wsb2_5end | |||
|id=chr5:117807283..117807364,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.56e-12!50;CL:0000117!6.15e-12!23;CL:0000337!6.15e-12!23;CL:0002321!1.45e-11!70;CL:0000220!1.45e-11!70;CL:0000221!6.37e-11!44;CL:0000133!6.37e-11!44;CL:0002319!9.63e-11!43;CL:0000393!1.58e-08!39;CL:0000211!1.58e-08!39;CL:0000540!1.09e-07!33;CL:0000047!1.09e-07!33;CL:0000031!1.09e-07!33;CL:0000404!1.09e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.15e-12,23;CL:0000337,6.15e-12,23;CL:0002321,1.45e-11,70;CL:0000221,6.37e-11,44;CL:0000133,6.37e-11,44;CL:0002319,9.63e-11,43;CL:0000393,1.58e-08,39;CL:0000211,1.58e-08,39;CL:0000540,1.09e-07,33;CL:0000047,1.09e-07,33;CL:0000031,1.09e-07,33;CL:0000404,1.09e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.85e-20!75;UBERON:0001016!4.85e-20!75;UBERON:0001017!7.59e-19!73;UBERON:0005743!7.59e-19!73;UBERON:0001049!2.15e-18!52;UBERON:0005068!2.15e-18!52;UBERON:0006241!2.15e-18!52;UBERON:0007135!2.15e-18!52;UBERON:0002020!5.04e-18!34;UBERON:0000955!2.16e-16!50;UBERON:0006238!2.16e-16!50;UBERON:0002616!3.20e-16!49;UBERON:0004121!1.80e-15!102;UBERON:0000924!1.80e-15!102;UBERON:0006601!1.80e-15!102;UBERON:0002791!1.03e-14!29;UBERON:0003528!1.03e-14!29;UBERON:0001893!1.03e-14!29;UBERON:0002346!1.27e-13!71;UBERON:0003075!1.27e-13!71;UBERON:0007284!1.27e-13!71;UBERON:0003080!1.60e-13!40;UBERON:0002780!3.05e-13!39;UBERON:0001890!3.05e-13!39;UBERON:0006240!3.05e-13!39;UBERON:0000033!5.51e-12!63;UBERON:0000956!1.71e-10!21;UBERON:0001869!1.71e-10!21;UBERON:0000203!1.71e-10!21;UBERON:0002619!1.85e-09!17;UBERON:0003056!4.93e-09!49;UBERON:0000025!1.40e-07!114;UBERON:0004111!1.46e-07!122;UBERON:0002021!4.10e-07!10;UBERON:0000411!4.10e-07!10;UBERON:0001950!4.10e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.85e-20,75;UBERON:0000073,1.80e-19,54;UBERON:0001017,7.59e-19,73;UBERON:0001049,2.15e-18,52;UBERON:0005068,2.15e-18,52;UBERON:0006241,2.15e-18,52;UBERON:0007135,2.15e-18,52;UBERON:0002020,5.04e-18,34;UBERON:0010314,3.31e-15,92;UBERON:0000955,4.30e-15,47;UBERON:0006238,4.30e-15,47;UBERON:0002616,6.33e-15,46;UBERON:0003528,1.03e-14,29;UBERON:0002791,1.03e-14,29;UBERON:0001893,1.03e-14,29;UBERON:0004121,4.36e-14,95;UBERON:0000924,4.36e-14,95;UBERON:0006601,4.36e-14,95;UBERON:0003080,1.60e-13,40;UBERON:0002780,3.05e-13,39;UBERON:0001890,3.05e-13,39;UBERON:0006240,3.05e-13,39;UBERON:0002346,2.07e-12,64;UBERON:0003075,2.07e-12,64;UBERON:0007284,2.07e-12,64;UBERON:0000956,1.71e-10,21;UBERON:0001869,1.71e-10,21;UBERON:0000203,1.71e-10,21;UBERON:0010371,3.83e-10,73;UBERON:0002619,1.85e-09,17;UBERON:0003056,4.93e-09,49;UBERON:0000025,1.40e-07,114;UBERON:0004111,1.46e-07,122;UBERON:0002021,4.10e-07,10;UBERON:0000411,4.10e-07,10;UBERON:0001950,4.10e-07,10 | |||
|phase1_expression=35.8733417514738,146.569671208532,178.359701840698,144.880357215972,160.787529312777,82.5966017806498,75.6904955529503,22.3383349553927,48.7128978644767,41.1953566326709,15.2383991720699,17.2307863429927,18.6608795625014,19.1450681297604,17.6548173762301,15.9955461237963,12.5921138063066,21.9246204923975,19.6073640056206,22.4926515452956,42.9468615262902,7.4468213400664,7.83599367416806,62.7170297350154,73.6403792225616,132.073351746455,106.828975047451,94.5918711491053,61.3775644844088,57.4628695852642,77.8274092400119,48.262331182932,35.6737576799051,63.3926724061755,18.4865036640816,20.94556531517,21.029443695024,48.1311375347444,35.160090503571,30.3643771504803,47.0585190424811,61.4740936462601,47.5800145970531,36.8877676668441,37.6108414824399,49.557623083654,64.9384815808872,75.6547292640149,65.6861686376071,60.4676986121021,67.0534959585487,71.8762821824858,28.8586082419307,18.859415692295,12.4354705682712,88.7545054324017,79.6562963029744,75.2881254725066,97.9211670560453,108.443150750767,120.427966666174,94.1987799152187,64.9185201161132,74.6916765343561,73.1761108299561,80.9947331038554,62.916023208865,38.0376122268339,56.4071490958118,59.2676069276122,54.8948149127107,139.68333137346,135.392415603339,69.0848107572341,62.5870925749083,75.3759405020217,72.6764814595965,76.867777527283,74.4991686292781,104.322053594583,101.459796755072,94.2853200707736,72.8667627393604,97.9206941455123,88.4701854627731,130.225834779361,118.168495063255,100.842100191488,120.707552173095,90.6858721281426,48.4073696131802,67.1130624045481,49.6379073606658,38.318926606285,37.0372557945171,35.8421509677868,42.5546592999208,36.6425193542824,36.6298266490045,43.8141072392822,52.3937521569251,42.3477375467249,45.8649431471962,85.3280043783997,29.0097994955027,26.3494260094103,32.8590889259609,39.8501740219519,8.54495016035667,49.8765587257811,40.5955664632758,54.1948551395611,64.1111082371843,58.9325524560754,45.2716522472464,54.9163004110682,42.0231445148436,19.8101118980279,23.8844849026466,40.2799456369049,29.3719219552323,23.2740121504907,24.2309289583559,41.2820923786281,59.4828647350212,45.2158987719207,8.50687383992034,9.59844369589452,7.62421362438388,60.6652089589532,85.5526127270832,104.167457901565,96.4724977067134,132.972037811772,70.0245710165718,78.2002887986592,27.2929495118848,30.1064868876425,40.1829185909543,30.9349528153117,19.3879460014429,34.4853156650209,28.9900028986612,33.9085840130359,33.4739575824533,29.7223831060852,38.8862156922875,29.7508876349868,12.287375597172,15.3175924935934,16.3634545472472,24.1115305670332,15.8486932058591,27.5119211552512,24.8996385053612,28.660934421863,7.72434506044558,6.69104558498259,11.0823764764281,33.7615009232868,33.5372265772968,35.832350230742,32.9075182463442,39.5496105812282,38.7210453347319,42.3211779445742,51.2402196673273,53.0114654346949,53.3173913719677,50.5635789363613,51.5597628711642,66.8133942533769,47.642375018158,50.8642327101809,80.7513402486249,82.9411175777033,45.2673732687803,44.1632446328119,18.3427895460301,21.5980104830208,21.6497335021117,33.2777815628515,40.2504259359215,58.0188159643305,55.9944292622524,59.4563226553679,53.2830642656571,51.1318133145758,45.2316682116359,43.1433316154026,36.9596065285727,41.222243563654,20.2944654019797,21.9357144210679,32.6852433451933,26.8819752755815,29.4807780494791,37.0317129020882,34.3374396584717,46.6448067615543,44.2736412512677,56.269106748341,38.8352941484165,10.5112416601139,13.7591296579242,14.1663130802458,19.4745716532963,22.9118301764796,30.8097280655518,26.4680446454746,39.8852657866587,38.7131592595195,35.9420516318386,42.7962089818779,43.3732365629239,39.1497260818023,33.5473163285976,35.7008205808892,37.874403984154,21.2230381182943,18.4150423379489,23.9340570943015,18.5405296147917,28.8110762799923,32.3739351604979,34.5386556708304,32.3152045417692,34.5484915852089,31.2531346568675,40.9658286789345,39.8902308110219,41.6589288714753,60.3165135757089,75.6028900508006,35.8987919303896,23.4546234359023,61.4908759653243,54.3862225787823,27.8689407140348,67.4097375635676,34.0748876969557,38.6534356853672,30.8055458757902,27.4814117645435,34.7565931568535,32.2707245099269,39.2666380624648,53.1905661398588,38.7382022387593,52.0540532603327,29.3815976381116,28.8466277940953,29.4825396429973,24.0856379539902,53.0980553359851,23.7925023431882,39.9067095193471,35.4577549941088,49.3154161110891,47.9598830792527,63.3149318262142,34.8992380298405,33.5107535681638,36.6602639205547,49.5467460302494,64.9753922463577,49.704182440053,31.330630361448,32.2103122619059,40.2953625859394,35.8227271957393,37.814189331639,45.9091767479918,63.9376393140658,45.0569679482324,49.9923687238616,32.8587313101893,34.9558856235938,24.7040572844735,27.0201903678138,37.602288360988,42.1842112344807,52.1750697567433,59.3360966433631,18.7957968877638,24.7664241555867,19.6306199011894,15.25784501738,16.6766957819651,19.2173665493479,16.487907709404,12.4556792568056,22.2501957825122,35.3228128665592,18.505655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| |||
|short_description=p1@Wsb2 | |||
}} |
Revision as of 06:10, 14 September 2013
Short description: | p1@Wsb2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Wsb2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000031309, ENSMUST00000125522, NM_021539, uc008zfq.1_5end |
EntrezGene: | Wsb2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.15e-12 | 23 |
neuroblast (sensu Vertebrata) | 6.15e-12 | 23 |
embryonic cell | 1.45e-11 | 70 |
ectodermal cell | 6.37e-11 | 44 |
neurectodermal cell | 6.37e-11 | 44 |
neural cell | 9.63e-11 | 43 |
electrically responsive cell | 1.58e-08 | 39 |
electrically active cell | 1.58e-08 | 39 |
neuron | 1.09e-07 | 33 |
neuronal stem cell | 1.09e-07 | 33 |
neuroblast | 1.09e-07 | 33 |
electrically signaling cell | 1.09e-07 | 33 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.