FFCP PHASE1:Mm9::chr5:116081911..116081942,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=77407|HGNC=|MCL_coexpression_id=22|UniProt=Q6PHN9|association_with_transcript=0bp_to_ENSMUST00000031492_5end|description=CAGE_peak_2_at_Rab35_5end|id=chr5:116081911..116081942,+|ontology_enrichment_celltype=CL:0000221!1.13e-16!44;CL:0000133!1.13e-16!44;CL:0002319!1.99e-16!43;CL:0000117!5.59e-15!23;CL:0000337!5.59e-15!23;CL:0000540!1.13e-13!33;CL:0000047!1.13e-13!33;CL:0000031!1.13e-13!33;CL:0000404!1.13e-13!33;CL:0000055!8.67e-11!50;CL:0000393!6.09e-09!39;CL:0000211!6.09e-09!39|ontology_enrichment_celltype_v019_2=CL:0000221,9.44e-17,44;CL:0000133,9.44e-17,44;CL:0002319,1.67e-16,43;CL:0000117,4.76e-15,23;CL:0000337,4.76e-15,23;CL:0000540,9.79e-14,33;CL:0000047,9.79e-14,33;CL:0000031,9.79e-14,33;CL:0000404,9.79e-14,33;CL:0000393,5.75e-09,39;CL:0000211,5.75e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.53e-22!75;UBERON:0001016!2.53e-22!75;UBERON:0001017!2.83e-21!73;UBERON:0005743!2.83e-21!73;UBERON:0004121!8.35e-20!102;UBERON:0000924!8.35e-20!102;UBERON:0006601!8.35e-20!102;UBERON:0001049!3.33e-17!52;UBERON:0005068!3.33e-17!52;UBERON:0006241!3.33e-17!52;UBERON:0007135!3.33e-17!52;UBERON:0002346!1.74e-16!71;UBERON:0003075!1.74e-16!71;UBERON:0007284!1.74e-16!71;UBERON:0002616!1.48e-15!49;UBERON:0000033!1.66e-15!63;UBERON:0000955!1.96e-15!50;UBERON:0006238!1.96e-15!50;UBERON:0002020!2.55e-13!34;UBERON:0003080!7.24e-12!40;UBERON:0003056!7.91e-12!49;UBERON:0002780!1.75e-11!39;UBERON:0001890!1.75e-11!39;UBERON:0006240!1.75e-11!39;UBERON:0002791!1.61e-10!29;UBERON:0003528!1.61e-10!29;UBERON:0001893!1.61e-10!29;UBERON:0000153!2.47e-10!94;UBERON:0007811!6.15e-10!86|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.97e-22,75;UBERON:0001017,2.23e-21,73;UBERON:0004121,1.67e-20,95;UBERON:0000924,1.67e-20,95;UBERON:0006601,1.67e-20,95;UBERON:0000073,1.39e-18,54;UBERON:0002346,1.35e-17,64;UBERON:0003075,1.35e-17,64;UBERON:0007284,1.35e-17,64;UBERON:0001049,2.76e-17,52;UBERON:0005068,2.76e-17,52;UBERON:0006241,2.76e-17,52;UBERON:0007135,2.76e-17,52;UBERON:0010371,2.50e-16,73;UBERON:0002616,7.92e-14,46;UBERON:0000955,1.03e-13,47;UBERON:0006238,1.03e-13,47;UBERON:0002020,2.22e-13,34;UBERON:0010314,2.01e-12,92;UBERON:0003080,6.40e-12,40;UBERON:0003056,7.30e-12,49;UBERON:0002780,1.56e-11,39;UBERON:0001890,1.56e-11,39;UBERON:0006240,1.56e-11,39;UBERON:0003528,1.45e-10,29;UBERON:0002791,1.45e-10,29;UBERON:0001893,1.45e-10,29|phase1_expression=3.84357233051505,2.44282785347553,0.909998478779072,0.90739263392049,0.500895729946347,1.34303417529512,0.700837921786577,1.03298658753261,0,0,2.73948749160808,1.43589886191606,0.342401459862411,1.04904482902797,5.66286595086627,3.84703008040669,5.59649502502517,1.57731082679119,2.19383093769182,2.54633791078818,2.04103896362567,1.29078236561151,1.82839852397255,1.27993938234725,0.68822784320151,1.14846392823004,0.430761996159075,0.215471232685889,0.570070258369122,0.504060259519861,0.886922042621219,1.27006134691926,4.30545351309199,0,1.1554064790051,0.498703936075477,0.408338712524738,3.34825304589526,0,2.09409497589519,1.17646297606203,2.73218193983378,1.45653105909346,0.503587271902309,0.608261587317087,1.46837401729345,4.69434806608824,5.66865406589161,5.05278220289285,3.69416808241138,2.51975558925653,1.43752564364972,4.02678254538567,1.45072428402269,1.34437519656986,1.02903774414379,0.286533439938757,1.54701627683233,10.5204559646991,7.93486468908049,8.23980824558033,3.72728985276045,1.77858959222228,3.1496490104849,3.9554654502679,5.6838409195688,2.99600110518405,5.76327457982332,8.08778976006126,7.2903206699113,6.73039876324422,7.42692559449889,9.49734726091938,7.7169203505421,9.68039257284187,5.51531271966013,5.50579404996943,7.53355294702608,9.5236050618871,9.75958529203434,12.8997577479398,10.4182674111352,7.53794097303729,2.8138130501584,5.34793867218835,4.12480019663135,6.12198227436143,7.26957838718672,4.54357159999104,4.6854367266207,0.289864488701678,0,2.719885334831,0.539703191637817,1.29955283489534,0,1.96622188184453,2.21559419351475,1.81850203222008,1.7666978725517,3.38024207464033,0,0,0,1.08245520505607,0.760079596425296,1.01104889002957,0.79928715803342,1.03575153458869,1.7813056687779,3.64319186208885,1.82679286987285,2.53677046981664,2.71300752994721,1.52865319276416,1.75933227861546,2.22475470960936,0.289198713839823,2.65383165584962,1.94120219936891,1.76673214768315,1.93950101254089,0,2.04946557908083,4.81727425670947,0.255457055208591,1.07833612055328,2.99951365496704,1.39777249780371,4.04434726393021,3.66000482254901,7.16229807043327,3.12883776346098,5.11430914660661,3.94797284663164,3.40706652442291,2.64782346010822,1.99051152976149,0.505445516867349,1.05220927943237,3.513251959993,4.59804208866946,3.78130472591233,2.10986744970001,3.33378845841506,2.94661556655154,3.46696380870997,0.517406741478031,4.095791865724,3.21480336285293,4.22282697993477,3.5071317188412,3.33656699070717,1.74126083261083,1.23469281844766,4.17971960318836,0,1.80143534980301,1.98914449576915,2.69263504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| ||
|EntrezGene=77407 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=Q6PHN9 | |||
|association_with_transcript=0bp_to_ENSMUST00000031492_5end | |||
|description=CAGE_peak_2_at_Rab35_5end | |||
|id=chr5:116081911..116081942,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.13e-16!44;CL:0000133!1.13e-16!44;CL:0002319!1.99e-16!43;CL:0000117!5.59e-15!23;CL:0000337!5.59e-15!23;CL:0000540!1.13e-13!33;CL:0000047!1.13e-13!33;CL:0000031!1.13e-13!33;CL:0000404!1.13e-13!33;CL:0000055!8.67e-11!50;CL:0000393!6.09e-09!39;CL:0000211!6.09e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,9.44e-17,44;CL:0000133,9.44e-17,44;CL:0002319,1.67e-16,43;CL:0000117,4.76e-15,23;CL:0000337,4.76e-15,23;CL:0000540,9.79e-14,33;CL:0000047,9.79e-14,33;CL:0000031,9.79e-14,33;CL:0000404,9.79e-14,33;CL:0000393,5.75e-09,39;CL:0000211,5.75e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.53e-22!75;UBERON:0001016!2.53e-22!75;UBERON:0001017!2.83e-21!73;UBERON:0005743!2.83e-21!73;UBERON:0004121!8.35e-20!102;UBERON:0000924!8.35e-20!102;UBERON:0006601!8.35e-20!102;UBERON:0001049!3.33e-17!52;UBERON:0005068!3.33e-17!52;UBERON:0006241!3.33e-17!52;UBERON:0007135!3.33e-17!52;UBERON:0002346!1.74e-16!71;UBERON:0003075!1.74e-16!71;UBERON:0007284!1.74e-16!71;UBERON:0002616!1.48e-15!49;UBERON:0000033!1.66e-15!63;UBERON:0000955!1.96e-15!50;UBERON:0006238!1.96e-15!50;UBERON:0002020!2.55e-13!34;UBERON:0003080!7.24e-12!40;UBERON:0003056!7.91e-12!49;UBERON:0002780!1.75e-11!39;UBERON:0001890!1.75e-11!39;UBERON:0006240!1.75e-11!39;UBERON:0002791!1.61e-10!29;UBERON:0003528!1.61e-10!29;UBERON:0001893!1.61e-10!29;UBERON:0000153!2.47e-10!94;UBERON:0007811!6.15e-10!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.97e-22,75;UBERON:0001017,2.23e-21,73;UBERON:0004121,1.67e-20,95;UBERON:0000924,1.67e-20,95;UBERON:0006601,1.67e-20,95;UBERON:0000073,1.39e-18,54;UBERON:0002346,1.35e-17,64;UBERON:0003075,1.35e-17,64;UBERON:0007284,1.35e-17,64;UBERON:0001049,2.76e-17,52;UBERON:0005068,2.76e-17,52;UBERON:0006241,2.76e-17,52;UBERON:0007135,2.76e-17,52;UBERON:0010371,2.50e-16,73;UBERON:0002616,7.92e-14,46;UBERON:0000955,1.03e-13,47;UBERON:0006238,1.03e-13,47;UBERON:0002020,2.22e-13,34;UBERON:0010314,2.01e-12,92;UBERON:0003080,6.40e-12,40;UBERON:0003056,7.30e-12,49;UBERON:0002780,1.56e-11,39;UBERON:0001890,1.56e-11,39;UBERON:0006240,1.56e-11,39;UBERON:0003528,1.45e-10,29;UBERON:0002791,1.45e-10,29;UBERON:0001893,1.45e-10,29 | |||
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| |||
|short_description=p2@Rab35 | |||
}} |
Revision as of 06:08, 14 September 2013
Short description: | p2@Rab35 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rab35_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000031492_5end |
EntrezGene: | Rab35 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 9.44e-17 | 44 |
neurectodermal cell | 9.44e-17 | 44 |
neural cell | 1.67e-16 | 43 |
CNS neuron (sensu Vertebrata) | 4.76e-15 | 23 |
neuroblast (sensu Vertebrata) | 4.76e-15 | 23 |
neuron | 9.79e-14 | 33 |
neuronal stem cell | 9.79e-14 | 33 |
neuroblast | 9.79e-14 | 33 |
electrically signaling cell | 9.79e-14 | 33 |
electrically responsive cell | 5.75e-09 | 39 |
electrically active cell | 5.75e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.97e-22 | 75 |
central nervous system | 2.23e-21 | 73 |
ectoderm-derived structure | 1.67e-20 | 95 |
ectoderm | 1.67e-20 | 95 |
presumptive ectoderm | 1.67e-20 | 95 |
regional part of nervous system | 1.39e-18 | 54 |
neurectoderm | 1.35e-17 | 64 |
neural plate | 1.35e-17 | 64 |
presumptive neural plate | 1.35e-17 | 64 |
neural tube | 2.76e-17 | 52 |
neural rod | 2.76e-17 | 52 |
future spinal cord | 2.76e-17 | 52 |
neural keel | 2.76e-17 | 52 |
ecto-epithelium | 2.50e-16 | 73 |
regional part of brain | 7.92e-14 | 46 |
brain | 1.03e-13 | 47 |
future brain | 1.03e-13 | 47 |
gray matter | 2.22e-13 | 34 |
structure with developmental contribution from neural crest | 2.01e-12 | 92 |
anterior neural tube | 6.40e-12 | 40 |
pre-chordal neural plate | 7.30e-12 | 49 |
regional part of forebrain | 1.56e-11 | 39 |
forebrain | 1.56e-11 | 39 |
future forebrain | 1.56e-11 | 39 |
brain grey matter | 1.45e-10 | 29 |
regional part of telencephalon | 1.45e-10 | 29 |
telencephalon | 1.45e-10 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.